Rorug04G0240700

ranBP2-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004516
Physical Location & Seq
Reverse (-)
40922432 .. 40922953
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0240700.1

Sequence Viewer

Length: 522 bp
ATGAGTGTTGTAGTCCCAAGTAACACTACCATCCCCACCACGAAAGAGAGTGTCTTCACAACAGTCAAAAGTGGGCAACAATGTGTAGAGTTTCCTGTGTATGAGGGTGAATCAATAATAGCCAAAGAGAACAGATTGTTAGGTGTATTTGAGCTCAAAGGCATCCAATGTGCTCCAAAGGGAGTGCCTGAGCTTAACGTTTGCTTTAACATTGATGCCAACGGCATCATTATGGTTGTCCCTGCCGAGGACAAATCAACGAAGAAGAAAAGCAAGATCACAATCGTCAATAACAACAAAGGCAGGCTATCTAAGATGGAAATTGCGAGGATGATCAAGGAGGCAAAAAAGTACAGGTTTGAAGATGAGGAGAATAAGAAGAAATTGGAGGCTAAGGCTGCATTGATGGACTATACACATGACATGGAGGAAAAAATTCCTAGTCTCAGAAAGCTCAACCGAGCGGACAAGAAGAAATATGAGGATGAGGTTGCAAAGACCTGCCGGTGGCCGACTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

173

Amino Acids

19.6

Weight (kDa)

9.1

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 4 - 165 5.6e-37 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 1 cut(s) 464
AclI AACGTT 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 1 cut(s) 435
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 247, 507
AgsI TTSAA 1 cut(s) 362
AluBI AGCT 3 cut(s) 154, 193, 454
AluI AGCT 3 cut(s) 154, 193, 454
Alw21I GWGCWC 2 cut(s) 156, 175
Alw26I GTCTC 1 cut(s) 449
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 156, 175
BbvI GCAGC 1 cut(s) 385
BccI CCATC 3 cut(s) 38, 310, 400
BceAI ACGGC 1 cut(s) 238
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmsI GCATC 3 cut(s) 171, 205, 234
BpiI GAAGAC 1 cut(s) 46
Bpu10I CCTNAGC 2 cut(s) 189, 393
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 507
Bse118I RCCGGY 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 4 cut(s) 30, 162, 336, 490
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 247, 507
BseMII CTCAG 2 cut(s) 180, 460
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 1 cut(s) 511
BsiHKAI GWGCWC 2 cut(s) 156, 175
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 247, 507
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 156, 175
Bsp143I GATC 2 cut(s) 276, 333
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 2 cut(s) 181, 459
BspMI ACCTGC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 504
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 276, 333
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 189, 312, 393, 446
BstF5I GGATG 4 cut(s) 30, 162, 336, 490
BstKTI GATC 2 cut(s) 279, 336
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 2 cut(s) 276, 333
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 4 cut(s) 30, 162, 336, 490
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 504
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 419, 424
CviJI RGCY 8 cut(s) 122, 154, 193, 307, 392, 398, 454, 511
CviKI_1 RGCY 8 cut(s) 122, 154, 193, 307, 392, 398, 454, 511
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 4 cut(s) 189, 312, 393, 446
DpnI GATC 2 cut(s) 278, 335
DpnII GATC 2 cut(s) 276, 333
EaeI YGGCCR 1 cut(s) 509
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 2 cut(s) 422, 427
FaiI YATR 6 cut(s) 102, 233, 414, 420, 425, 480
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 418, 423
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 4 cut(s) 17, 149, 343, 497
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 441
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 511
HapII CCGG 1 cut(s) 505
Hin1II CATG 2 cut(s) 422, 427
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 449
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 401, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 4 cut(s) 189, 312, 393, 446
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 422, 427
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 2 cut(s) 276, 333
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 7 cut(s) 108, 201, 255, 289, 340, 514, 518
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 3 cut(s) 171, 205, 234
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 278, 335
MbiI CCGCTC 1 cut(s) 464
MboI GATC 2 cut(s) 276, 333
MboII GAAGA 6 cut(s) 46, 274, 277, 374, 391, 484
MhlI GDGCHC 2 cut(s) 156, 175
MluCI AATT 3 cut(s) 321, 383, 435
MnlI CCTC 9 cut(s) 97, 241, 321, 334, 361, 382, 421, 475, 481
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 2 cut(s) 195, 207
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 505
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 276, 333
NlaIII CATG 2 cut(s) 422, 427
NmeAIII GCCGAG 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 198
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 195, 207
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 276, 333
SduI GDGCHC 2 cut(s) 156, 175
SetI ASST 8 cut(s) 145, 156, 195, 201, 359, 456, 492, 503
SfaNI GCATC 3 cut(s) 171, 205, 234
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 3 cut(s) 321, 383, 435
SsiI CCGC 1 cut(s) 464
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 156
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 201
TasI AATT 3 cut(s) 321, 383, 435
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 195, 207
Tru9I TTAA 2 cut(s) 195, 207
TseI GCWGC 1 cut(s) 398
XapI RAATTY 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.