Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Forward (+)

6996339 .. 6999053

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCTCAGGTTGACAACAGAAATTCTTCAGCAGCCAAGCGTGCTAGAACCGATGGTAGTCGAAGGGAAGATGATTGGACCTGCCCTAGCTGTGGGAATGATAATTTTTCATTTAGAACGACTTGCAATATGCGTAATTGCACTCAGCCGAGGCCTGCAGATCATAACTCAAAACCCGCTGCTAAGCCTTTCCCAGCCCCACAGGGTTACCCGTCTGCTCCTCCTTATCTGGGCTCTGCTGCACCCTCTTCAATGTATCTTGGTGTGCCACCCTATGGTTCTTCTATCTTCAATGGATCATCCATTCCTCCCTATGATGTTCCATTTTCAGGTCGATCAGCATATCATTACAACTACGGCAGCCGCCTATCTACAGGCAGCCCCTACAGACCTCTGCATTTGTCTGGACCAACACCATATTCTAGTGGTTCCATGATTGGAAATGGTGGAATGTATGGTATCCCCCCGCCTATGATGGATCGGTTTGGCCTGGGTCTGCCCATGGGCCCTGGCCCTATGGGACCAAGGCCAGGATTCTTTCCAGATGATAAAGCTCAAAAGAAGGGCACAGATGCTACACGTGACAATGACTGGACATGCCCAAAATGTGGAAACGTCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAGCCTGGATCTCAGCAGCCTGCAAAGATGGACAAAAGTTCCAAACAAAAGATGCCAGAAGGTAGCTGGAAGTGTGAGAAATGTAATAATATAAACTATCCATTTAGAACCAAGTGTAACAGACAGAACTGTGGAGCAGACAAACCAGCCGAGTCAAAGAAGTCCCCTTCACCTGCTCCGAATGAAAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

288

Amino Acids

31.26

Weight (kDa)

9.41

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc36I	ACCTGC	2 cut(s)	89, 847
AccB7I	CCANNNNNTGG	3 cut(s)	275, 608, 671
AciI	CCGC	3 cut(s)	177, 364, 467
AclWI	GGATC	3 cut(s)	304, 486, 682
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	581
AfiI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 530, 608, 671
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	252, 292
AjnI	CCWGG	4 cut(s)	489, 508, 529, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	3 cut(s)	90, 554, 732
AluI	AGCT	3 cut(s)	90, 554, 732
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	304, 486, 682
AoxI	GGCC	5 cut(s)	152, 487, 505, 511, 527
ApaI	GGGCCC	1 cut(s)	509
ApeKI	GCWGC	6 cut(s)	32, 179, 239, 360, 378, 682
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	6 cut(s)	78, 407, 505, 506, 512, 521
AsuHPI	GGTGA	1 cut(s)	828
AvaII	GGWCC	3 cut(s)	78, 407, 521
BaeGI	GKGCMC	2 cut(s)	509, 569
BanII	GRGCYC	2 cut(s)	236, 509
BbrPI	CACGTG	1 cut(s)	581
BbvI	GCAGC	6 cut(s)	44, 166, 226, 372, 390, 694
BccI	CCATC	3 cut(s)	47, 469, 688
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	4 cut(s)	491, 510, 531, 672
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	45, 87, 423
BfmI	CTRYAG	3 cut(s)	156, 372, 385
BfuAI	ACCTGC	2 cut(s)	89, 847
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	7 cut(s)	33, 180, 240, 361, 364, 379, 683
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	7 cut(s)	34, 181, 241, 362, 365, 380, 684
Bme1390I	CCNGG	4 cut(s)	491, 510, 531, 672
Bme18I	GGWCC	3 cut(s)	78, 407, 521
BmgT120I	GGNCC	6 cut(s)	78, 407, 505, 506, 512, 521
BmiI	GGNNCC	3 cut(s)	430, 507, 522
BmrFI	CCNGG	4 cut(s)	491, 510, 531, 672
BmsI	GCATC	2 cut(s)	562, 708
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	149, 490, 501, 508, 524
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 530, 608, 671
Bse1I	ACTGG	1 cut(s)	596
BseBI	CCWGG	4 cut(s)	491, 510, 531, 672
BseDI	CCNNGG	5 cut(s)	149, 490, 501, 508, 524
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 530, 608, 671
BseMII	CTCAG	3 cut(s)	20, 158, 692
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	2 cut(s)	509, 569
BseXI	GCAGC	6 cut(s)	44, 166, 226, 372, 390, 694
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	154, 489, 507, 513, 529
BslFI	GGGAC	2 cut(s)	534, 814
BslI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 530, 608, 671
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	534, 814
BsnI	GGCC	5 cut(s)	154, 489, 507, 513, 529
Bsp120I	GGGCCC	1 cut(s)	505
Bsp1286I	GDGCHC	3 cut(s)	236, 509, 569
Bsp143I	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
Bsp1720I	GCTNAGC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	3 cut(s)	177, 364, 467
BspANI	GGCC	5 cut(s)	154, 489, 507, 513, 529
BspCNI	CTCAG	3 cut(s)	19, 157, 691
BspLI	GGNNCC	3 cut(s)	430, 507, 522
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	2 cut(s)	89, 847
BspPI	GGATC	3 cut(s)	304, 486, 682
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	5 cut(s)	149, 490, 501, 508, 524
BssMI	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
BssT1I	CCWWGG	2 cut(s)	501, 524
Bst2UI	CCWGG	4 cut(s)	491, 510, 531, 672
Bst4CI	ACNGT	2 cut(s)	637, 797
Bst6I	CTCTTC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	42, 156, 687
BstDEI	CTNAG	4 cut(s)	6, 144, 183, 678
BstDSI	CCRYGG	1 cut(s)	501
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	6 cut(s)	163, 299, 338, 481, 677, 859
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	4 cut(s)	491, 510, 531, 672
BstNSI	RCATGY	1 cut(s)	600
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	4 cut(s)	489, 508, 529, 670
BstSFI	CTRYAG	3 cut(s)	156, 372, 385
BstSLI	GKGCMC	2 cut(s)	509, 569
BstV1I	GCAGC	6 cut(s)	44, 166, 226, 372, 390, 694
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	5 cut(s)	154, 489, 507, 513, 529
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	299
BveI	ACCTGC	2 cut(s)	89, 847
Cac8I	GCNNGC	3 cut(s)	42, 156, 687
Cfr13I	GGNCC	6 cut(s)	78, 407, 505, 506, 512, 521
CviAII	CATG	4 cut(s)	433, 502, 597, 646
DdeI	CTNAG	4 cut(s)	6, 144, 183, 678
DpnI	GATC	6 cut(s)	162, 298, 337, 480, 676, 858
DpnII	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	501, 524
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	236, 509
Eco47I	GGWCC	3 cut(s)	78, 407, 521
Eco57I	CTGAAG	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	4 cut(s)	489, 508, 529, 670
EcoT14I	CCWWGG	2 cut(s)	501, 524
EcoT38I	GRGCYC	2 cut(s)	236, 509
ErhI	CCWWGG	2 cut(s)	501, 524
FaeI	CATG	4 cut(s)	436, 505, 600, 649
FaqI	GGGAC	2 cut(s)	534, 814
FatI	CATG	4 cut(s)	432, 501, 596, 645
FauI	CCCGC	2 cut(s)	184, 474
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	7 cut(s)	33, 180, 240, 361, 364, 379, 683
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	2 cut(s)	236, 509
Fsp4HI	GCNGC	7 cut(s)	33, 180, 240, 361, 364, 379, 683
FspBI	CTAG	3 cut(s)	45, 87, 423
GluI	GCNGC	7 cut(s)	33, 180, 240, 361, 364, 379, 683
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	5 cut(s)	154, 489, 507, 513, 529
Hin1II	CATG	4 cut(s)	436, 505, 600, 649
HincII	GTYRAC	2 cut(s)	13, 619
HindII	GTYRAC	2 cut(s)	13, 619
HinfI	GANTC	2 cut(s)	534, 818
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	2 cut(s)	13, 619
Hpy188I	TCNGA	1 cut(s)	846
Hpy188III	TCNNGA	2 cut(s)	405, 542
Hpy8I	GTNNAC	2 cut(s)	13, 619
HpyAV	CCTTC	4 cut(s)	57, 556, 719, 843
HpyCH4III	ACNGT	2 cut(s)	637, 797
HpyCH4IV	ACGT	2 cut(s)	580, 615
HpyCH4V	TGCA	7 cut(s)	126, 141, 158, 242, 397, 657, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	6, 144, 183, 678
HpySE526I	ACGT	2 cut(s)	580, 615
Hsp92II	CATG	4 cut(s)	436, 505, 600, 649
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
LmnI	GCTCC	3 cut(s)	223, 800, 847
Lsp1109I	GCAGC	6 cut(s)	44, 166, 226, 372, 390, 694
LweI	GCATC	2 cut(s)	562, 708
MaeI	CTAG	3 cut(s)	45, 87, 423
MaeII	ACGT	2 cut(s)	580, 615
MaeIII	GTNAC	4 cut(s)	206, 581, 641, 782
MalI	GATC	6 cut(s)	162, 298, 337, 480, 676, 858
MboI	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
MboII	GAAGA	5 cut(s)	18, 80, 240, 273, 280
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	3 cut(s)	236, 509, 569
MluCI	AATT	3 cut(s)	22, 103, 136
MlyI	GAGTC	1 cut(s)	827
MnlI	CCTC	6 cut(s)	144, 231, 256, 318, 402, 642
MroXI	GAANNNNTTC	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	179
MspR9I	CCNGG	4 cut(s)	491, 510, 531, 672
MvaI	CCWGG	4 cut(s)	491, 510, 531, 672
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
NlaIII	CATG	4 cut(s)	436, 505, 600, 649
NlaIV	GGNNCC	3 cut(s)	430, 507, 522
NmeAIII	GCCGAG	2 cut(s)	174, 841
NmuCI	GTSAC	1 cut(s)	581
NspI	RCATGY	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	534
PflMI	CCANNNNNTGG	3 cut(s)	275, 608, 671
PkrI	GCNGC	7 cut(s)	34, 181, 241, 362, 365, 380, 684
PleI	GAGTC	1 cut(s)	826
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	826
Ppu21I	YACGTR	1 cut(s)	581
Psp6I	CCWGG	4 cut(s)	489, 508, 529, 670
PspCI	CACGTG	1 cut(s)	581
PspEI	GGTNACC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	4 cut(s)	489, 508, 529, 670
PspN4I	GGNNCC	3 cut(s)	430, 507, 522
PspOMI	GGGCCC	1 cut(s)	505
PspPI	GGNCC	6 cut(s)	78, 407, 505, 506, 512, 521
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	674
SatI	GCNGC	7 cut(s)	33, 180, 240, 361, 364, 379, 683
Sau3AI	GATC	6 cut(s)	160, 296, 335, 478, 674, 856
Sau96I	GGNCC	6 cut(s)	78, 407, 505, 506, 512, 521
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	4 cut(s)	491, 510, 531, 672
SduI	GDGCHC	3 cut(s)	236, 509, 569
SfaNI	GCATC	2 cut(s)	562, 708
SfcI	CTRYAG	3 cut(s)	156, 372, 385
SinI	GGWCC	3 cut(s)	78, 407, 521
Sse9I	AATT	3 cut(s)	22, 103, 136
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	177, 364, 467
SspMI	CTAG	3 cut(s)	45, 87, 423
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	489, 508, 529, 670
StyI	CCWWGG	2 cut(s)	501, 524
TaaI	ACNGT	2 cut(s)	637, 797
TaiI	ACGT	2 cut(s)	583, 618
TaqI	TCGA	2 cut(s)	61, 334
TasI	AATT	3 cut(s)	22, 103, 136
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	6 cut(s)	32, 179, 239, 360, 378, 682
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	99, 864
Van91I	CCANNNNNTGG	3 cut(s)	275, 608, 671
VpaK11BI	GGWCC	3 cut(s)	78, 407, 521
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	3 cut(s)	45, 87, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.