pycom16g10270

ranBP2-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0004516
Physical Location & Seq
Forward (+)
7000349 .. 7003353
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10270.2

Sequence Viewer

Length: 1023 bp
ATGTCTCAGGTTGATAACAGAAATTCTTCAGCAGCCAAGCGTGCTAGAACCGATGGTAGTCGAAGGGAAGATGATTGGACGTGCCCTAGCTGTGGGAATGATAATTTTTCATTTAGAACGACTTGCAATATGCGTAATTGCACTCAGCCAAGGCCTGCGGATCATAACTCAAAACCCGCTGCTAAGCCTTTCCCTGCCCCACAAGGTTACACGTCTGCTGCTCCTTATCTGGGCTCTGCTGCACCCTCCTCAATGTATCTTGGTGTGCCACCCTATGGTTCTTCTATCTTCAATGGATCATCCGTTCCTCCCTATGATGTTCCATTTTCAGGGGGTTCAGCATATCATTACAACTACGGCAGCCGCCTATCTACAGGCAGCCCCTACAGACCTCTGCATTTGTCTGGACCAACACCATATTCTAGTGGATCCATGATTGGAAATGGTGGAATGTATGGTATGCCCCCTCCTATGATGGATCGGTTTGGCCTGGGTCTGTCCATGGGCCCTGGCCCTATGGGACCAAGGCCAGGATTCCTTCCAGATGATAAAGCTCAAAAGAAGGGCACAGATGCTACACGTGACAATGACTGGGCATGCCCAAAATGTGGAAATGTCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACGCCAAAGCCTGGATCTCAGCAGCCTGCAAAGAGTGACAAAACTTCTAAACAAAAAATGCCGGAAGGTAGCTGGAAGTGTGAGAAATGTAATAATATAAACTATCCATTTAGAACCAAGTGTAACAGACAGAACTGTGGAGCGGACAAACCAGCCGAGTCAAAGAAGTCCCCTTCACCTGCTCCGAATGAAAATAATCAGGTTTGTTGCATTAGATATTTTCTCTGGATTTCTATTGGTTGCTTGGAATCCTTGTTTTTGGTGATGTGTATACACATTTCAAACATAATATACATCTTATGCTGTGAACTATTAATGGATCAATTTAAAAGCTTTTCTTCTGCACTTGATTTTTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

341

Amino Acids

37.23

Weight (kDa)

9.02

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 847
Acc36I ACCTGC 1 cut(s) 847
AccB7I CCANNNNNTGG 3 cut(s) 275, 608, 671
AccBSI CCGCTC 1 cut(s) 803
AccI GTMKAC 1 cut(s) 931
AciI CCGC 4 cut(s) 158, 177, 364, 803
AclWI GGATC 7 cut(s) 168, 304, 423, 436, 486, 682, 987
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 12
AcvI CACGTG 1 cut(s) 581
AfiI CCNNNNNNNGG 7 cut(s) 92, 230, 275, 329, 530, 608, 671
AflIII ACRYGT 2 cut(s) 210, 578
AgsI TTSAA 2 cut(s) 292, 942
AjiI CACGTC 2 cut(s) 81, 213
AjnI CCWGG 4 cut(s) 489, 508, 529, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 90, 554, 732, 993
AluI AGCT 4 cut(s) 90, 554, 732, 993
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 7 cut(s) 168, 304, 423, 436, 486, 682, 987
AoxI GGCC 5 cut(s) 152, 487, 505, 511, 527
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 7 cut(s) 32, 179, 218, 239, 360, 378, 682
ApoI RAATTY 1 cut(s) 22
AseI ATTAAT 1 cut(s) 974
Asp700I GAANNNNTTC 1 cut(s) 25
AspS9I GGNCC 5 cut(s) 407, 505, 506, 512, 521
AsuHPI GGTGA 2 cut(s) 828, 934
AvaII GGWCC 2 cut(s) 407, 521
BaeGI GKGCMC 3 cut(s) 86, 509, 569
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 2 cut(s) 236, 509
BbrPI CACGTG 1 cut(s) 581
BbvI GCAGC 7 cut(s) 44, 166, 205, 226, 372, 390, 694
BccI CCATC 2 cut(s) 47, 469
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 4 cut(s) 491, 510, 531, 672
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 45, 87, 423
BfmI CTRYAG 2 cut(s) 372, 385
BfuAI ACCTGC 1 cut(s) 847
BisI GCNGC 8 cut(s) 33, 180, 219, 240, 361, 364, 379, 683
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 8 cut(s) 34, 181, 220, 241, 362, 365, 380, 684
Bme1390I CCNGG 4 cut(s) 491, 510, 531, 672
Bme18I GGWCC 2 cut(s) 407, 521
BmgBI CACGTC 2 cut(s) 81, 213
BmgT120I GGNCC 5 cut(s) 407, 505, 506, 512, 521
BmiI GGNNCC 3 cut(s) 430, 507, 522
BmrFI CCNGG 4 cut(s) 491, 510, 531, 672
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 1 cut(s) 562
BmuI ACTGGG 1 cut(s) 601
Bpu1102I GCTNAGC 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 581
BsaJI CCNNGG 5 cut(s) 149, 490, 501, 508, 524
Bsc4I CCNNNNNNNGG 7 cut(s) 92, 230, 275, 329, 530, 608, 671
Bse1I ACTGG 1 cut(s) 596
BseBI CCWGG 4 cut(s) 491, 510, 531, 672
BseDI CCNNGG 5 cut(s) 149, 490, 501, 508, 524
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 7 cut(s) 92, 230, 275, 329, 530, 608, 671
BseMII CTCAG 3 cut(s) 20, 158, 692
BseNI ACTGG 1 cut(s) 596
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 3 cut(s) 86, 509, 569
BseXI GCAGC 7 cut(s) 44, 166, 205, 226, 372, 390, 694
BsgI GTGCAG 2 cut(s) 225, 987
BshFI GGCC 5 cut(s) 154, 489, 507, 513, 529
BsiSI CCGG 1 cut(s) 722
BslFI GGGAC 2 cut(s) 534, 814
BslI CCNNNNNNNGG 7 cut(s) 92, 230, 275, 329, 530, 608, 671
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 534, 814
BsnI GGCC 5 cut(s) 154, 489, 507, 513, 529
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 4 cut(s) 86, 236, 509, 569
Bsp143I GATC 6 cut(s) 160, 296, 428, 478, 674, 979
Bsp1720I GCTNAGC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 4 cut(s) 158, 177, 364, 803
BspANI GGCC 5 cut(s) 154, 489, 507, 513, 529
BspCNI CTCAG 3 cut(s) 19, 157, 691
BspLI GGNNCC 3 cut(s) 430, 507, 522
BspMI ACCTGC 1 cut(s) 847
BspPI GGATC 7 cut(s) 168, 304, 423, 436, 486, 682, 987
BsrBI CCGCTC 1 cut(s) 803
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 5 cut(s) 149, 490, 501, 508, 524
BssMI GATC 6 cut(s) 160, 296, 428, 478, 674, 979
BssNAI GTATAC 1 cut(s) 932
BssT1I CCWWGG 3 cut(s) 149, 501, 524
Bst1107I GTATAC 1 cut(s) 932
Bst2UI CCWGG 4 cut(s) 491, 510, 531, 672
Bst4CI ACNGT 2 cut(s) 637, 797
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 42, 156, 598, 687
BstDEI CTNAG 4 cut(s) 6, 144, 183, 678
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 6 cut(s) 163, 299, 431, 481, 677, 982
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 160, 296, 428, 478, 674, 979
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 4 cut(s) 491, 510, 531, 672
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 4 cut(s) 489, 508, 529, 670
BstSFI CTRYAG 2 cut(s) 372, 385
BstSLI GKGCMC 3 cut(s) 86, 509, 569
BstV1I GCAGC 7 cut(s) 44, 166, 205, 226, 372, 390, 694
BstX2I RGATCY 2 cut(s) 428, 674
BstYI RGATCY 2 cut(s) 428, 674
BstZ17I GTATAC 1 cut(s) 932
BsuRI GGCC 5 cut(s) 154, 489, 507, 513, 529
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 2 cut(s) 81, 213
BtsCI GGATG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 4 cut(s) 42, 156, 598, 687
Cfr13I GGNCC 5 cut(s) 407, 505, 506, 512, 521
CviAII CATG 4 cut(s) 433, 502, 597, 646
DdeI CTNAG 4 cut(s) 6, 144, 183, 678
DpnI GATC 6 cut(s) 162, 298, 430, 480, 676, 981
DpnII GATC 6 cut(s) 160, 296, 428, 478, 674, 979
DraI TTTAAA 1 cut(s) 988
Eco130I CCWWGG 3 cut(s) 149, 501, 524
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 236, 509
Eco47I GGWCC 2 cut(s) 407, 521
Eco57I CTGAAG 1 cut(s) 12
Eco72I CACGTG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 4 cut(s) 489, 508, 529, 670
EcoT14I CCWWGG 3 cut(s) 149, 501, 524
EcoT38I GRGCYC 2 cut(s) 236, 509
ErhI CCWWGG 3 cut(s) 149, 501, 524
FaeI CATG 4 cut(s) 436, 505, 600, 649
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FaqI GGGAC 2 cut(s) 534, 814
FatI CATG 4 cut(s) 432, 501, 596, 645
FauI CCCGC 1 cut(s) 184
FblI GTMKAC 1 cut(s) 931
Fnu4HI GCNGC 8 cut(s) 33, 180, 219, 240, 361, 364, 379, 683
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 2 cut(s) 236, 509
Fsp4HI GCNGC 8 cut(s) 33, 180, 219, 240, 361, 364, 379, 683
FspBI CTAG 3 cut(s) 45, 87, 423
GluI GCNGC 8 cut(s) 33, 180, 219, 240, 361, 364, 379, 683
HaeIII GGCC 5 cut(s) 154, 489, 507, 513, 529
HapII CCGG 1 cut(s) 722
Hin1II CATG 4 cut(s) 436, 505, 600, 649
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 991
HinfI GANTC 3 cut(s) 534, 818, 908
HpaII CCGG 1 cut(s) 722
HphI GGTGA 2 cut(s) 828, 934
Hpy166II GTNNAC 3 cut(s) 619, 932, 968
Hpy188I TCNGA 1 cut(s) 846
Hpy188III TCNNGA 3 cut(s) 405, 542, 886
Hpy8I GTNNAC 3 cut(s) 619, 932, 968
HpyAV CCTTC 5 cut(s) 57, 548, 556, 719, 843
HpyCH4III ACNGT 2 cut(s) 637, 797
HpyCH4IV ACGT 3 cut(s) 80, 212, 580
HpyCH4V TGCA 8 cut(s) 126, 141, 242, 397, 657, 689, 870, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 4 cut(s) 6, 144, 183, 678
HpySE526I ACGT 3 cut(s) 80, 212, 580
Hsp92II CATG 4 cut(s) 436, 505, 600, 649
Kzo9I GATC 6 cut(s) 160, 296, 428, 478, 674, 979
LmnI GCTCC 3 cut(s) 226, 800, 847
Lsp1109I GCAGC 7 cut(s) 44, 166, 205, 226, 372, 390, 694
LweI GCATC 1 cut(s) 562
MaeI CTAG 3 cut(s) 45, 87, 423
MaeII ACGT 3 cut(s) 80, 212, 580
MaeIII GTNAC 5 cut(s) 206, 581, 641, 695, 782
MalI GATC 6 cut(s) 162, 298, 430, 480, 676, 981
MbiI CCGCTC 1 cut(s) 803
MboI GATC 6 cut(s) 160, 296, 428, 478, 674, 979
MboII GAAGA 5 cut(s) 18, 80, 273, 280, 990
MflI RGATCY 2 cut(s) 428, 674
MhlI GDGCHC 4 cut(s) 86, 236, 509, 569
MluCI AATT 4 cut(s) 22, 103, 136, 983
MlyI GAGTC 1 cut(s) 827
MnlI CCTC 6 cut(s) 256, 259, 318, 402, 477, 642
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 2 cut(s) 974, 987
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 722
MspR9I CCNGG 4 cut(s) 491, 510, 531, 672
MvaI CCWGG 4 cut(s) 491, 510, 531, 672
MwoI GCNNNNNNNGC 1 cut(s) 41
NcoI CCATGG 1 cut(s) 501
NdeII GATC 6 cut(s) 160, 296, 428, 478, 674, 979
NlaIII CATG 4 cut(s) 436, 505, 600, 649
NlaIV GGNNCC 3 cut(s) 430, 507, 522
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 2 cut(s) 581, 695
NspI RCATGY 1 cut(s) 600
PaeI GCATGC 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 847
PceI AGGCCT 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 534, 908
PflMI CCANNNNNTGG 3 cut(s) 275, 608, 671
PkrI GCNGC 8 cut(s) 34, 181, 220, 241, 362, 365, 380, 684
PleI GAGTC 1 cut(s) 826
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 1 cut(s) 826
Ppu21I YACGTR 1 cut(s) 581
PshBI ATTAAT 1 cut(s) 974
Psp6I CCWGG 4 cut(s) 489, 508, 529, 670
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 4 cut(s) 489, 508, 529, 670
PspN4I GGNNCC 3 cut(s) 430, 507, 522
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 5 cut(s) 407, 505, 506, 512, 521
PsuI RGATCY 2 cut(s) 428, 674
SaqAI TTAA 2 cut(s) 974, 987
SatI GCNGC 8 cut(s) 33, 180, 219, 240, 361, 364, 379, 683
Sau3AI GATC 6 cut(s) 160, 296, 428, 478, 674, 979
Sau96I GGNCC 5 cut(s) 407, 505, 506, 512, 521
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 4 cut(s) 491, 510, 531, 672
SduI GDGCHC 4 cut(s) 86, 236, 509, 569
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 2 cut(s) 372, 385
SinI GGWCC 2 cut(s) 407, 521
SphI GCATGC 1 cut(s) 600
Sse9I AATT 4 cut(s) 22, 103, 136, 983
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 4 cut(s) 158, 177, 364, 803
SspMI CTAG 3 cut(s) 45, 87, 423
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 4 cut(s) 489, 508, 529, 670
StyI CCWWGG 3 cut(s) 149, 501, 524
TaaI ACNGT 2 cut(s) 637, 797
TaiI ACGT 3 cut(s) 83, 215, 583
TaqI TCGA 1 cut(s) 61
TasI AATT 4 cut(s) 22, 103, 136, 983
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 534, 908
Tru1I TTAA 2 cut(s) 974, 987
Tru9I TTAA 2 cut(s) 974, 987
TseFI GTSAC 2 cut(s) 581, 695
TseI GCWGC 7 cut(s) 32, 179, 218, 239, 360, 378, 682
Tsp45I GTSAC 2 cut(s) 581, 695
TspDTI ATGAA 2 cut(s) 99, 864
TspGWI ACGGA 1 cut(s) 292
Van91I CCANNNNNTGG 3 cut(s) 275, 608, 671
VpaK11BI GGWCC 2 cut(s) 407, 521
VspI ATTAAT 1 cut(s) 974
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 45, 87, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.