Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Reverse (-)

58158755 .. 58163025

Gene Structure 4271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTCAGGTTGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACCGACGGGAGTAGAAGGGAGGATGATTGGACCTGCCCTGCGTGTGGGAATGTGAATTTCTCGTTTAGAACAACTTGCAATATGCGTAATTGCACTCAGCCGAGGCCGGCTGATCATAACTCTAAATCGGCTGCGAAGCCTTTCCAAGCCCCACAACCTTACTCTTCTGCTCCTCCGTATGTGGGTTCTGCTGCACCCTCCTCAATGTATCTTAGTGTGCCTCCATATGGTTCTTCTCTGTTCAATGGATCATCCATTCCTCCCTATGATGTTCCGTTTTCTGGGGGATCAGCATATCATTACAACTACGGCAATCGCCTGTCTACAGGCAGCCCCTACAGACCCCTGCATTTGCCTGCACCTACGCCTTATTCTAGTGGATCCCTGATAGGAAATGGTGGATTATACGGTATTCCTCCTATGATGGATCGGTATGGCCTTGGACTTCCCCTGGGCCCTGGTCCTATGGGGCCAAGGCCAGGATTCTATCCCGACGATAAATCTCAAAAGAAGAGTGCAGATGCCACACGCGATAATGACTGGACGTGCCCAAAATGTGGAAATATCAACTTTTCATTTAGAACCGTTTGTAACATGAGGAAGTGCAATACGCCAAAACCTGGATCTCAGGCTGCAAAGAATGACAAAAGTGCAAGTAAGTTGATCCTGTGCCTTATTGTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

244

Amino Acids

26.28

Weight (kDa)

9.44

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	22 - 44	6.9e-06	Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP	PF00641	194 - 224	7.9e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	605, 668
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	579
AclWI	GGATC	7 cut(s)	304, 343, 423, 436, 483, 679, 706
AcsI	RAATTY	2 cut(s)	22, 103
AfiI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
AgsI	TTSAA	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	4 cut(s)	498, 505, 526, 667
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	7 cut(s)	304, 343, 423, 436, 483, 679, 706
AoxI	GGCC	5 cut(s)	152, 484, 502, 518, 524
ApaI	GGGCCC	1 cut(s)	506
ApeKI	GCWGC	5 cut(s)	32, 179, 239, 378, 680
ApoI	RAATTY	2 cut(s)	22, 103
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	2 cut(s)	78, 509
BaeGI	GKGCMC	2 cut(s)	506, 599
BamHI	GGATCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	4 cut(s)	500, 507, 528, 669
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	45, 423
BfmI	CTRYAG	2 cut(s)	372, 385
BfuAI	ACCTGC	1 cut(s)	89
BisI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
BlsI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
Bme1390I	CCNGG	4 cut(s)	500, 507, 528, 669
Bme18I	GGWCC	2 cut(s)	78, 509
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
BmiI	GGNNCC	3 cut(s)	430, 504, 519
BmrFI	CCNGG	4 cut(s)	500, 507, 528, 669
BmsI	GCATC	1 cut(s)	559
BsaJI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	4 cut(s)	500, 507, 528, 669
BseDI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
BseGI	GGATG	2 cut(s)	76, 299
BseLI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BseMII	CTCAG	3 cut(s)	20, 158, 689
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	2 cut(s)	210, 238
BseSI	GKGCMC	2 cut(s)	506, 599
BseXI	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BsgI	GTGCAG	3 cut(s)	225, 390, 585
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	5 cut(s)	154, 486, 504, 520, 526
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	506, 599
Bsp143I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
BspANI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BspCNI	CTCAG	3 cut(s)	19, 157, 688
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	430, 504, 519
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	7 cut(s)	304, 343, 423, 436, 483, 679, 706
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
BssMI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
BssT1I	CCWWGG	2 cut(s)	487, 521
Bst2UI	CCWGG	4 cut(s)	500, 507, 528, 669
Bst4CI	ACNGT	2 cut(s)	458, 634
Bst6I	CTCTTC	2 cut(s)	217, 554
BstC8I	GCNNGC	3 cut(s)	42, 156, 405
BstDEI	CTNAG	4 cut(s)	6, 144, 260, 675
BstF5I	GGATG	2 cut(s)	76, 299
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	7 cut(s)	163, 299, 338, 431, 478, 674, 714
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	4 cut(s)	500, 507, 528, 669
BstSCI	CCNGG	4 cut(s)	498, 505, 526, 667
BstSFI	CTRYAG	2 cut(s)	372, 385
BstSLI	GKGCMC	2 cut(s)	506, 599
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BstX2I	RGATCY	2 cut(s)	428, 671
BstYI	RGATCY	2 cut(s)	428, 671
BsuRI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	76, 299
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	42, 156, 405
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
CviAII	CATG	1 cut(s)	643
DdeI	CTNAG	4 cut(s)	6, 144, 260, 675
DpnI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 713
DpnII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
Eam1104I	CTCTTC	2 cut(s)	217, 554
EarI	CTCTTC	2 cut(s)	217, 554
Eco130I	CCWWGG	2 cut(s)	487, 521
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	78, 509
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	4 cut(s)	498, 505, 526, 667
EcoT14I	CCWWGG	2 cut(s)	487, 521
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	487, 521
FaeI	CATG	1 cut(s)	646
FatI	CATG	1 cut(s)	642
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FokI	GGATG	2 cut(s)	83, 286
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FspBI	CTAG	2 cut(s)	45, 423
GluI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
HaeIII	GGCC	5 cut(s)	154, 486, 504, 520, 526
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	531
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	13, 372
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	2 cut(s)	13, 372
Hpy99I	CGWCG	2 cut(s)	56, 545
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	458, 634
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	9 cut(s)	126, 141, 242, 397, 407, 566, 654, 683, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	6, 144, 260, 675
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	5 cut(s)	44, 166, 226, 390, 667
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	45, 423
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	638, 727
MalI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 713
MboI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
MboII	GAAGA	3 cut(s)	204, 273, 571
MflI	RGATCY	2 cut(s)	428, 671
MhlI	GDGCHC	2 cut(s)	506, 599
MluCI	AATT	3 cut(s)	22, 103, 136
MnlI	CCTC	9 cut(s)	61, 144, 231, 256, 259, 279, 318, 474, 639
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	4 cut(s)	500, 507, 528, 669
MvaI	CCWGG	4 cut(s)	500, 507, 528, 669
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	3 cut(s)	430, 504, 519
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	531
PflMI	CCANNNNNTGG	2 cut(s)	605, 668
PkrI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
Psp6I	CCWGG	4 cut(s)	498, 505, 526, 667
PspGI	CCWGG	4 cut(s)	498, 505, 526, 667
PspN4I	GGNNCC	3 cut(s)	430, 504, 519
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	5 cut(s)	78, 502, 503, 509, 518
PsuI	RGATCY	2 cut(s)	428, 671
SatI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
Sau3AI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 711
Sau96I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
ScrFI	CCNGG	4 cut(s)	500, 507, 528, 669
SduI	GDGCHC	2 cut(s)	506, 599
SetI	ASST	7 cut(s)	12, 83, 208, 412, 596, 670, 734
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	372, 385
SinI	GGWCC	2 cut(s)	78, 509
Sse9I	AATT	3 cut(s)	22, 103, 136
SspMI	CTAG	2 cut(s)	45, 423
StyD4I	CCNGG	4 cut(s)	498, 505, 526, 667
StyI	CCWWGG	2 cut(s)	487, 521
TaaI	ACNGT	2 cut(s)	458, 634
TaiI	ACGT	1 cut(s)	596
TasI	AATT	3 cut(s)	22, 103, 136
TfiI	GAWTC	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	5 cut(s)	32, 179, 239, 378, 680
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	2 cut(s)	15, 612
TspGWI	ACGGA	2 cut(s)	213, 312
Van91I	CCANNNNNTGG	2 cut(s)	605, 668
VpaK11BI	GGWCC	2 cut(s)	78, 509
XapI	RAATTY	2 cut(s)	22, 103
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	45, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.