Prupe.1G225000_v2.0.a1

ranBP2-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004516
Physical Location & Seq
Reverse (-)
23869926 .. 23874490
4565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G225000.7

Sequence Viewer

Length: 969 bp
ATGTCTCAGGTTGACAACAGAAATTCTTCAGCAGCCAAGCGTGCTAGAACCGATGGTAGTAGAAGGGAAGATGATTGGACCTGCCCTAGCTGTGGAAATGTTAATTTTTCCTTTAGAACGACTTGCAATATGCGTAATTGCACTCAGCCAAGGCCAGCGGATCATAATTCAATATCAAGATCAAGTTTTGTACTTTTTCAGAAATCTGCTGCTAAGCCTTTCCAAGCCCCACAAGGTTACTCATCTGCTGCTCCCTATGTGGGTTCTGCTGCACCCTCTTCAATGTATCTTGGTGTTCCACCATATGGTTCCTCTCTCTTCAATGGATCATCTATTCCACCCTATGATGTTCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGCCTATCTACAGGCAGCCCCTACAGACCTCTGCATTTGTCTGGACCAACACCTTATTCTAGCGGATCCATGATTGGAAATGGTGGAATGTATGGTATGCCCCCTATGATGGAACGGTATGGCCTGGGTCTGCCCATGGGCCCTGGTCCTATGGGGCCAAGGCCAGGATTCTATCCAGATGATAAATCTCAAAAGAAGGGCGCAGATGCTACACGTGATAATGATTGGACATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGCAACATGAGGAAGTGCAATACCCCAAAGCCTGGATCTCAGCAGGCTGCAAAGAATGACAAAAATTCTAAGCAAAAAATGCCAGAAGGTAGCTGGAAGTGTGAGAAATGTAATAACATAAACTATCCATTCAGAACAAAGTGTAACAGACAGAACTGTGGAGCAGATAAACCAGCCGAGTCAAAGAAGTCCCCTTCACCTGCCCCGGATGAAAATGATCAGGAGTTGGAGTTGGTTGTTGGAAGACGAAGTTGCAGACTTGACAGGTGGTGTGGGCAGGCGCTGGTGGGTGCCTTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

323

Amino Acids

35.09

Weight (kDa)

9.36

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 874
Acc36I ACCTGC 2 cut(s) 89, 874
AccB1I GGYRCC 1 cut(s) 956
AccB7I CCANNNNNTGG 4 cut(s) 305, 359, 635, 698
AciI CCGC 3 cut(s) 158, 394, 456
AclWI GGATC 6 cut(s) 168, 334, 373, 453, 466, 709
AcsI RAATTY 2 cut(s) 22, 730
AcuI CTGAAG 1 cut(s) 12
AcvI CACGTG 1 cut(s) 608
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 8 cut(s) 92, 260, 305, 359, 502, 557, 635, 698
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 3 cut(s) 171, 282, 322
AjnI CCWGG 4 cut(s) 516, 535, 556, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 2 cut(s) 90, 759
AluI AGCT 2 cut(s) 90, 759
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 6 cut(s) 168, 334, 373, 453, 466, 709
AlwNI CAGNNNCTG 1 cut(s) 949
AoxI GGCC 5 cut(s) 152, 514, 532, 548, 554
ApaI GGGCCC 1 cut(s) 536
ApeKI GCWGC 7 cut(s) 32, 209, 248, 269, 390, 408, 713
ApoI RAATTY 2 cut(s) 22, 730
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 2 cut(s) 596, 949
AspS9I GGNCC 6 cut(s) 78, 437, 532, 533, 539, 548
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 1 cut(s) 855
AvaII GGWCC 3 cut(s) 78, 437, 539
BaeGI GKGCMC 1 cut(s) 536
BamHI GGATCC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 536
BbrPI CACGTG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 916
BbvI GCAGC 7 cut(s) 44, 196, 235, 256, 402, 420, 700
BccI CCATC 2 cut(s) 47, 496
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 4 cut(s) 518, 537, 558, 699
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 45, 87, 453
BfmI CTRYAG 2 cut(s) 402, 415
BfoI RGCGCY 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 89, 874
BisI GCNGC 8 cut(s) 33, 210, 249, 270, 391, 394, 409, 714
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 8 cut(s) 34, 211, 250, 271, 392, 395, 410, 715
Bme1390I CCNGG 5 cut(s) 518, 537, 558, 699, 872
Bme18I GGWCC 3 cut(s) 78, 437, 539
BmgT120I GGNCC 6 cut(s) 78, 437, 532, 533, 539, 548
BmiI GGNNCC 5 cut(s) 310, 460, 534, 549, 958
BmrFI CCNGG 5 cut(s) 518, 537, 558, 699, 872
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 916
Bpu10I CCTNAGC 1 cut(s) 961
Bpu1102I GCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 608
BsaJI CCNNGG 6 cut(s) 149, 517, 528, 535, 551, 870
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 8 cut(s) 92, 260, 305, 359, 502, 557, 635, 698
BseBI CCWGG 4 cut(s) 518, 537, 558, 699
BseDI CCNNGG 6 cut(s) 149, 517, 528, 535, 551, 870
BseGI GGATG 1 cut(s) 880
BseLI CCNNNNNNNGG 8 cut(s) 92, 260, 305, 359, 502, 557, 635, 698
BseMII CTCAG 3 cut(s) 20, 158, 719
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 7 cut(s) 44, 196, 235, 256, 402, 420, 700
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 5 cut(s) 154, 516, 534, 550, 556
BshNI GGYRCC 1 cut(s) 956
BsiSI CCGG 1 cut(s) 872
BslFI GGGAC 1 cut(s) 841
BslI CCNNNNNNNGG 8 cut(s) 92, 260, 305, 359, 502, 557, 635, 698
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 841
BsnI GGCC 5 cut(s) 154, 516, 534, 550, 556
Bsp120I GGGCCC 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 3 cut(s) 158, 394, 456
BspANI GGCC 5 cut(s) 154, 516, 534, 550, 556
BspCNI CTCAG 3 cut(s) 19, 157, 718
BspLI GGNNCC 5 cut(s) 310, 460, 534, 549, 958
BspMI ACCTGC 2 cut(s) 89, 874
BspPI GGATC 6 cut(s) 168, 334, 373, 453, 466, 709
BspT107I GGYRCC 1 cut(s) 956
BssECI CCNNGG 6 cut(s) 149, 517, 528, 535, 551, 870
BssMI GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
BssT1I CCWWGG 3 cut(s) 149, 528, 551
Bst2UI CCWGG 4 cut(s) 518, 537, 558, 699
Bst4CI ACNGT 3 cut(s) 510, 664, 824
Bst6I CTCTTC 2 cut(s) 283, 323
BstAPI GCANNNNNTGC 1 cut(s) 745
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 4 cut(s) 42, 156, 711, 945
BstDEI CTNAG 6 cut(s) 6, 144, 213, 705, 735, 961
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 880
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 2 cut(s) 596, 949
BstKTI GATC 7 cut(s) 163, 182, 329, 368, 461, 704, 886
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
BstMWI GCNNNNNNNGC 2 cut(s) 41, 745
BstNI CCWGG 4 cut(s) 518, 537, 558, 699
BstNSI RCATGY 1 cut(s) 627
BstSCI CCNGG 5 cut(s) 516, 535, 556, 697, 870
BstSFI CTRYAG 2 cut(s) 402, 415
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 7 cut(s) 44, 196, 235, 256, 402, 420, 700
BstV2I GAAGAC 1 cut(s) 916
BstX2I RGATCY 2 cut(s) 458, 701
BstYI RGATCY 2 cut(s) 458, 701
BsuRI GGCC 5 cut(s) 154, 516, 534, 550, 556
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 1 cut(s) 880
BveI ACCTGC 2 cut(s) 89, 874
Cac8I GCNNGC 4 cut(s) 42, 156, 711, 945
CaiI CAGNNNCTG 1 cut(s) 949
CfoI GCGC 2 cut(s) 596, 949
Cfr13I GGNCC 6 cut(s) 78, 437, 532, 533, 539, 548
Csp6I GTAC 1 cut(s) 191
CviAII CATG 5 cut(s) 463, 529, 624, 673, 966
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 6 cut(s) 6, 144, 213, 705, 735, 961
DpnI GATC 7 cut(s) 162, 181, 328, 367, 460, 703, 885
DpnII GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
Eam1104I CTCTTC 2 cut(s) 283, 323
EarI CTCTTC 2 cut(s) 283, 323
Eco130I CCWWGG 3 cut(s) 149, 528, 551
Eco24I GRGCYC 1 cut(s) 536
Eco47I GGWCC 3 cut(s) 78, 437, 539
Eco57I CTGAAG 1 cut(s) 12
Eco72I CACGTG 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 533
EcoRII CCWGG 4 cut(s) 516, 535, 556, 697
EcoT14I CCWWGG 3 cut(s) 149, 528, 551
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 3 cut(s) 149, 528, 551
FaeI CATG 5 cut(s) 466, 532, 627, 676, 969
FaqI GGGAC 1 cut(s) 841
FatI CATG 5 cut(s) 462, 528, 623, 672, 965
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 883
Fnu4HI GCNGC 8 cut(s) 33, 210, 249, 270, 391, 394, 409, 714
FokI GGATG 1 cut(s) 887
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 8 cut(s) 33, 210, 249, 270, 391, 394, 409, 714
FspBI CTAG 3 cut(s) 45, 87, 453
GlaI GCGC 2 cut(s) 595, 948
GluI GCNGC 8 cut(s) 33, 210, 249, 270, 391, 394, 409, 714
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 5 cut(s) 154, 516, 534, 550, 556
HapII CCGG 1 cut(s) 872
HhaI GCGC 2 cut(s) 596, 949
Hin1II CATG 5 cut(s) 466, 532, 627, 676, 969
Hin6I GCGC 2 cut(s) 594, 947
HinP1I GCGC 2 cut(s) 594, 947
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 561, 845
HpaII CCGG 1 cut(s) 872
HphI GGTGA 1 cut(s) 855
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 201, 800
Hpy188III TCNNGA 4 cut(s) 177, 435, 569, 887
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 57, 583, 746, 870
HpyCH4III ACNGT 3 cut(s) 510, 664, 824
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 8 cut(s) 126, 141, 272, 427, 669, 684, 716, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 745
HpyF3I CTNAG 6 cut(s) 6, 144, 213, 705, 735, 961
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 5 cut(s) 466, 532, 627, 676, 969
HspAI GCGC 2 cut(s) 594, 947
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
LmnI GCTCC 2 cut(s) 256, 827
Lsp1109I GCAGC 7 cut(s) 44, 196, 235, 256, 402, 420, 700
LweI GCATC 1 cut(s) 589
MaeI CTAG 3 cut(s) 45, 87, 453
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 2 cut(s) 236, 809
MalI GATC 7 cut(s) 162, 181, 328, 367, 460, 703, 885
MboI GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
MboII GAAGA 5 cut(s) 18, 80, 270, 310, 921
MflI RGATCY 2 cut(s) 458, 701
MhlI GDGCHC 1 cut(s) 536
MluCI AATT 5 cut(s) 22, 103, 136, 166, 730
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 2 cut(s) 873, 886
MnlI CCTC 4 cut(s) 286, 322, 432, 669
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 5 cut(s) 518, 537, 558, 699, 872
MvaI CCWGG 4 cut(s) 518, 537, 558, 699
MwoI GCNNNNNNNGC 2 cut(s) 41, 745
NciI CCSGG 1 cut(s) 872
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 304
NdeII GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
NlaIII CATG 5 cut(s) 466, 532, 627, 676, 969
NlaIV GGNNCC 5 cut(s) 310, 460, 534, 549, 958
NmeAIII GCCGAG 1 cut(s) 868
NspI RCATGY 1 cut(s) 627
PaqCI CACCTGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 561
PflMI CCANNNNNTGG 4 cut(s) 305, 359, 635, 698
PkrI GCNGC 8 cut(s) 34, 211, 250, 271, 392, 395, 410, 715
PleI GAGTC 1 cut(s) 853
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 608
Psp6I CCWGG 4 cut(s) 516, 535, 556, 697
PspCI CACGTG 1 cut(s) 608
PspGI CCWGG 4 cut(s) 516, 535, 556, 697
PspN4I GGNNCC 5 cut(s) 310, 460, 534, 549, 958
PspOMI GGGCCC 1 cut(s) 532
PspPI GGNCC 6 cut(s) 78, 437, 532, 533, 539, 548
PstNI CAGNNNCTG 1 cut(s) 949
PsuI RGATCY 2 cut(s) 458, 701
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 8 cut(s) 33, 210, 249, 270, 391, 394, 409, 714
Sau3AI GATC 7 cut(s) 160, 179, 326, 365, 458, 701, 883
Sau96I GGNCC 6 cut(s) 78, 437, 532, 533, 539, 548
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 5 cut(s) 518, 537, 558, 699, 872
SduI GDGCHC 1 cut(s) 536
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 402, 415
SinI GGWCC 3 cut(s) 78, 437, 539
Sse9I AATT 5 cut(s) 22, 103, 136, 166, 730
SsiI CCGC 3 cut(s) 158, 394, 456
SspMI CTAG 3 cut(s) 45, 87, 453
StyD4I CCNGG 5 cut(s) 516, 535, 556, 697, 870
StyI CCWWGG 3 cut(s) 149, 528, 551
TaaI ACNGT 3 cut(s) 510, 664, 824
TaiI ACGT 1 cut(s) 610
TasI AATT 5 cut(s) 22, 103, 136, 166, 730
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 561
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 7 cut(s) 32, 209, 248, 269, 390, 408, 713
TspDTI ATGAA 1 cut(s) 891
Van91I CCANNNNNTGG 4 cut(s) 305, 359, 635, 698
VpaK11BI GGWCC 3 cut(s) 78, 437, 539
XapI RAATTY 2 cut(s) 22, 730
XceI RCATGY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 45, 87, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.