Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

25426234 .. 25427461

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAACACTTCATCGTCCTTCAAGGCCCTTGCTTCTCCTCCTTTGATTTCTACCTCTAGACCAACAACAAAATCTTTCCCAAACCCAAGATTCACTTCAAGATTCTCTCCTAAACCCATTACATGCATGCGCGATTCTCTTAATCTTGGCTCGAATCCAAAAGCTCCAAGCCCTTTTTCTTTGGCAACGGTTTCGGTTGATGCTCCTTTGGGAACAAAAACCTCCGACAAGCTTCGCATCCTCGTATCCGAGTTCCGGTCCTTAACCGAACCTATCGACCGTGTAAAACGTCTCTTAAACTACGCAGCAACTCTAGCCCCGCTCGATGAGTCGGCTCGCATCTCCGAGAACCGAGTCACGGGATGTACGACTCAAGTGTGGTTAGAGATAAAGATGGATGAGTTTGGGAGGATGAGGTTTAAAGCAGACAGTGATTCGGAGATCTCGAAAGGGTTTTGTTCTTGTCTTATCTGGATCCTAGACGGTGCTAAGCCAGAGGAAGTGATGGGCGTGAGAAGCGAGGACTTGTCGGAGATGAACGTTGGGGTTCACGGCAAGGAACAGTCAAGGGTTAACACGTGGCACAACGTGTTGATGAGTATGCAGAAACGGACCATGACTCTAGTTGCTACTGACGTGGCGCATCAAAGAGGACAAAGACCACCGCACCAACATGATCTCTTATTTAAATACGTTAATGGAAGTTACATGGAATCTTCTAAGGTTCATGATTATTCCATTTCGTTGCTTCCTTTGTATTATGATTTTATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

258

Amino Acids

28.97

Weight (kDa)

9.01

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	83 - 203	5.4e-29	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	322
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	320, 665
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	2 cut(s)	469, 482
AcvI	CACGTG	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	255, 358
AflIII	ACRYGT	2 cut(s)	576, 588
AgsI	TTSAA	2 cut(s)	22, 99
AjiI	CACGTC	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	4 cut(s)	79, 111, 160, 192
AluBI	AGCT	2 cut(s)	164, 232
AluI	AGCT	2 cut(s)	164, 232
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	469, 482
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	132, 643
AspS9I	GGNCC	3 cut(s)	25, 258, 612
AvaII	GGWCC	2 cut(s)	258, 612
BamHI	GGATCC	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	388, 499
BceAI	ACGGC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	4 cut(s)	57, 314, 479, 623
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	306
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	307
Bme18I	GGWCC	2 cut(s)	258, 612
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	25, 258, 612
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	4 cut(s)	190, 246, 348, 652
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 358
BseGI	GGATG	4 cut(s)	237, 368, 403, 417
BseLI	CCNNNNNNNGG	2 cut(s)	255, 358
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	255, 358
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	441, 474, 676
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	2 cut(s)	320, 665
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	469, 482
BsrBI	CCGCTC	1 cut(s)	322
BssMI	GATC	3 cut(s)	441, 474, 676
Bst4CI	ACNGT	5 cut(s)	190, 281, 431, 485, 564
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	128, 337
BstDEI	CTNAG	2 cut(s)	489, 720
BstF5I	GGATG	4 cut(s)	237, 368, 403, 417
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	132, 643
BstKTI	GATC	3 cut(s)	444, 477, 679
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	441, 474, 676
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 516
BstNSI	RCATGY	2 cut(s)	126, 130
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	441, 474
BstYI	RGATCY	2 cut(s)	441, 474
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	4 cut(s)	237, 368, 403, 417
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	128, 337
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	2 cut(s)	132, 643
Cfr13I	GGNCC	3 cut(s)	25, 258, 612
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	6 cut(s)	123, 127, 616, 674, 709, 728
CviJI	RGCY	8 cut(s)	26, 150, 164, 171, 232, 317, 335, 493
CviKI_1	RGCY	8 cut(s)	26, 150, 164, 171, 232, 317, 335, 493
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	489, 720
DpnI	GATC	3 cut(s)	443, 476, 678
DpnII	GATC	3 cut(s)	441, 474, 676
DraI	TTTAAA	2 cut(s)	421, 688
DraIII	CACNNNGTG	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	258, 612
Eco72I	CACGTG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	6 cut(s)	126, 130, 619, 677, 712, 731
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	6 cut(s)	122, 126, 615, 673, 708, 727
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	4 cut(s)	224, 375, 410, 424
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	4 cut(s)	57, 314, 479, 623
GlaI	GCGC	2 cut(s)	131, 642
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	256
HhaI	GCGC	2 cut(s)	132, 643
Hin1II	CATG	6 cut(s)	126, 130, 619, 677, 712, 731
Hin6I	GCGC	2 cut(s)	130, 641
HinP1I	GCGC	2 cut(s)	130, 641
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	230
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	550, 574
Hpy188I	TCNGA	5 cut(s)	226, 250, 346, 439, 532
Hpy188III	TCNNGA	5 cut(s)	57, 99, 445, 472, 728
Hpy8I	GTNNAC	2 cut(s)	550, 574
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	5 cut(s)	190, 281, 431, 485, 564
HpyCH4IV	ACGT	6 cut(s)	289, 540, 578, 588, 636, 693
HpyCH4V	TGCA	2 cut(s)	126, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 516
HpyF3I	CTNAG	2 cut(s)	489, 720
HpySE526I	ACGT	6 cut(s)	289, 540, 578, 588, 636, 693
Hsp92II	CATG	6 cut(s)	126, 130, 619, 677, 712, 731
HspAI	GCGC	2 cut(s)	130, 641
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	441, 474, 676
LmnI	GCTCC	2 cut(s)	169, 208
LpnPI	CCDG	3 cut(s)	269, 457, 507
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	4 cut(s)	190, 246, 348, 652
MaeI	CTAG	4 cut(s)	57, 314, 479, 623
MaeII	ACGT	6 cut(s)	289, 540, 578, 588, 636, 693
MaeIII	GTNAC	2 cut(s)	355, 704
MalI	GATC	3 cut(s)	443, 476, 678
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	3 cut(s)	441, 474, 676
MboII	GAAGA	1 cut(s)	708
MflI	RGATCY	2 cut(s)	441, 474
MlyI	GAGTC	4 cut(s)	338, 363, 364, 613
MmeI	TCCRAC	2 cut(s)	249, 510
MnlI	CCTC	9 cut(s)	48, 64, 232, 251, 402, 408, 490, 514, 644
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	7 cut(s)	141, 263, 296, 420, 573, 687, 696
MslI	CAYNNNNRTG	1 cut(s)	672
MspI	CCGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	314, 516
NdeII	GATC	3 cut(s)	441, 474, 676
NlaIII	CATG	6 cut(s)	126, 130, 619, 677, 712, 731
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	126, 130
PaeI	GCATGC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	2 cut(s)	365, 443
PfeI	GAWTC	6 cut(s)	90, 102, 134, 154, 434, 713
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	4 cut(s)	337, 362, 364, 613
PmaCI	CACGTG	1 cut(s)	579
PmlI	CACGTG	1 cut(s)	579
PpsI	GAGTC	4 cut(s)	337, 362, 364, 613
Ppu21I	YACGTR	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	540
PspCI	CACGTG	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	3 cut(s)	25, 258, 612
PsuI	RGATCY	2 cut(s)	441, 474
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	672
SaqAI	TTAA	7 cut(s)	141, 263, 296, 420, 573, 687, 696
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	441, 474, 676
Sau96I	GGNCC	3 cut(s)	25, 258, 612
SchI	GAGTC	4 cut(s)	338, 363, 364, 613
SfaNI	GCATC	4 cut(s)	190, 246, 348, 652
SinI	GGWCC	2 cut(s)	258, 612
SmiI	ATTTAAAT	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	130
SsiI	CCGC	2 cut(s)	320, 665
SspMI	CTAG	4 cut(s)	57, 314, 479, 623
SwaI	ATTTAAAT	1 cut(s)	688
TaaI	ACNGT	5 cut(s)	190, 281, 431, 485, 564
TaiI	ACGT	6 cut(s)	292, 543, 581, 591, 639, 696
TaqI	TCGA	4 cut(s)	152, 276, 324, 446
TfiI	GAWTC	6 cut(s)	90, 102, 134, 154, 434, 713
Tru1I	TTAA	7 cut(s)	141, 263, 296, 420, 573, 687, 696
Tru9I	TTAA	7 cut(s)	141, 263, 296, 420, 573, 687, 696
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	17, 551, 716
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	258, 612
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	2 cut(s)	126, 130
XspI	CTAG	4 cut(s)	57, 314, 479, 623
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.