RLG00000006755

SufE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015092
Physical Location & Seq
Reverse (-)
10212400 .. 10213817
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006755

Sequence Viewer

Length: 678 bp
ATGAACTCATCCACCCCATTAAGACCAACACTCCCTAGTTTCTCTCCCTCTCTTCCCCCCTGCTCCTTCTTCTCCACTCACTCCTCAAACCCTAAATCGCAACGAAATGAGAGAAATCTCGAGTCGAAATCAATCAAATGCGTCCATAGTGGTTTTGGTTCGTATGCTCCTTGCAAATCAAGCATTCGAAACCCTTCCGCGCTGTCATCTTGCTTGACGGAGGCTCCAGCTCTGGTTCGGACCTCTGACACGGTTGCGGATAAGATGCAACGGCTGGTTTTGGAATTCAAGTCCCTGTCGGAGCCGATAGACCGCGTGAAGAGGCTTTTACACTACGCGGAGAACCTGCCGCCGTGCAGTGAGTCGGCTCGGCAGCCGGAGAGCCGGGTCCCGGGCTGCACGACTCAGGTGTGGCTGGAGGCCGAGCTGGACGAGCTGAGGCGAATGAGGTTCCGAGCCGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATCTGGATGCTCGACGGCGCCGAGCCGAGGGAGGTCTTGGAAATAAGGGCCAAAGATTTGGAGGATGTGAATGTGGGACTGTACGGAAAGGCCAATTCCAGAGTGAACACGTGGCAAAACGTGTTGTTGGCGATGCAGAGGAAGACTCAGGCTTTGGTTACGGCGTCGGAGAGATAG

Protein Analysis

226

Amino Acids

25.15

Weight (kDa)

8.64

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufE PF02657 95 - 214 2.4e-29 Fe-S metabolism associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67810
fragaria_vesca FvH4_4g25940 FvH4_4g25940
malus_domestica MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica Prupe.1G246900_v2.0.a1
pyrus_communis pycom13g08620
rosa_chinensis RchiOBHm_Chr4g0433411
rosa_laevigata RLG00000006755
rosa_multiflora Rmu_sc0000759.1_g000005
rosa_roxburghii Rroxscaffold_5G00374960
rosa_rugosa Rorug04G0268600
rosa_samantha Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana Rw4G028010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 518
AccII CGCG 3 cut(s) 200, 315, 338
AciI CCGC 5 cut(s) 198, 257, 313, 338, 350
AcsI RAATTY 1 cut(s) 284
AcvI CACGTG 1 cut(s) 612
AcyI GRCGYC 2 cut(s) 519, 665
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 2 cut(s) 391, 528
AflIII ACRYGT 2 cut(s) 609, 621
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 3 cut(s) 230, 427, 436
AluI AGCT 3 cut(s) 230, 427, 436
Ama87I CYCGRG 2 cut(s) 119, 391
AoxI GGCC 3 cut(s) 420, 549, 591
ApeKI GCWGC 2 cut(s) 373, 396
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
Asp700I GAANNNNTTC 2 cut(s) 193, 485
AspLEI GCGC 2 cut(s) 202, 521
AspS9I GGNCC 3 cut(s) 240, 388, 549
AsuC2I CCSGG 3 cut(s) 386, 392, 393
AsuII TTCGAA 1 cut(s) 187
AvaI CYCGRG 2 cut(s) 119, 391
AvaII GGWCC 2 cut(s) 240, 388
BanI GGYRCC 1 cut(s) 518
BauI CACGAG 1 cut(s) 493
BbrPI CACGTG 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 383, 385
BceAI ACGGC 3 cut(s) 287, 337, 532
BcnI CCSGG 3 cut(s) 386, 392, 393
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 474
BisI GCNGC 3 cut(s) 350, 374, 397
BlsI GCNGC 3 cut(s) 351, 375, 398
Bme1390I CCNGG 3 cut(s) 386, 392, 393
Bme18I GGWCC 2 cut(s) 240, 388
BmeT110I CYCGRG 2 cut(s) 119, 391
BmgT120I GGNCC 3 cut(s) 240, 388, 549
BmiI GGNNCC 6 cut(s) 225, 303, 389, 390, 452, 520
BmrFI CCNGG 3 cut(s) 386, 392, 393
BmsI GCATC 3 cut(s) 255, 498, 624
BpiI GAAGAC 1 cut(s) 650
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 2 cut(s) 210, 437
Bpu10I CCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 3 cut(s) 386, 392, 393
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 2 cut(s) 519, 665
BsaJI CCNNGG 2 cut(s) 391, 527
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 208, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 528
BseDI CCNNGG 2 cut(s) 391, 527
BseGI GGATG 3 cut(s) 8, 513, 571
BseLI CCNNNNNNNGG 2 cut(s) 391, 528
BseMII CTCAG 3 cut(s) 419, 428, 662
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 383, 385
BsgI GTGCAG 2 cut(s) 376, 382
Bsh1236I CGCG 3 cut(s) 200, 315, 338
BshFI GGCC 3 cut(s) 422, 551, 593
BshNI GGYRCC 1 cut(s) 518
BsiHKCI CYCGRG 2 cut(s) 119, 391
BsiSI CCGG 3 cut(s) 377, 385, 392
BslFI GGGAC 3 cut(s) 277, 374, 591
BslI CCNNNNNNNGG 2 cut(s) 391, 528
BsmFI GGGAC 3 cut(s) 277, 374, 591
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 3 cut(s) 422, 551, 593
BsoBI CYCGRG 2 cut(s) 119, 391
Bsp119I TTCGAA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 474, 501
BspACI CCGC 5 cut(s) 198, 257, 313, 338, 350
BspANI GGCC 3 cut(s) 422, 551, 593
BspCNI CTCAG 3 cut(s) 418, 429, 661
BspFNI CGCG 3 cut(s) 200, 315, 338
BspLI GGNNCC 6 cut(s) 225, 303, 389, 390, 452, 520
BspMI ACCTGC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 391, 527
BssMI GATC 2 cut(s) 474, 501
BssNI GRCGYC 2 cut(s) 519, 665
BssSI CACGAG 1 cut(s) 493
Bst2BI CACGAG 1 cut(s) 493
Bst4CI ACNGT 2 cut(s) 253, 582
Bst6I CTCTTC 2 cut(s) 57, 314
BstACI GRCGYC 2 cut(s) 519, 665
BstBAI YACGTR 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 405, 437, 648
BstF5I GGATG 3 cut(s) 8, 513, 571
BstFNI CGCG 3 cut(s) 200, 315, 338
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 2 cut(s) 202, 521
BstKTI GATC 2 cut(s) 477, 504
BstMBI GATC 2 cut(s) 474, 501
BstMWI GCNNNNNNNGC 2 cut(s) 180, 433
BstSCI CCNGG 3 cut(s) 384, 390, 391
BstUI CGCG 3 cut(s) 200, 315, 338
BstV1I GCAGC 2 cut(s) 383, 385
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 1 cut(s) 474
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 3 cut(s) 422, 551, 593
BtgZI GCGATG 1 cut(s) 647
BtsCI GGATG 3 cut(s) 8, 513, 571
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 354
CfoI GCGC 2 cut(s) 202, 521
Cfr13I GGNCC 3 cut(s) 240, 388, 549
Cfr9I CCCGGG 1 cut(s) 391
CseI GACGC 2 cut(s) 130, 654
Csp6I GTAC 1 cut(s) 583
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 3 cut(s) 405, 437, 648
DinI GGCGCC 1 cut(s) 520
DpnI GATC 2 cut(s) 476, 503
DpnII GATC 2 cut(s) 474, 501
Eam1104I CTCTTC 2 cut(s) 57, 314
EarI CTCTTC 2 cut(s) 57, 314
Eco47I GGWCC 2 cut(s) 240, 388
Eco72I CACGTG 1 cut(s) 612
Eco88I CYCGRG 2 cut(s) 119, 391
EcoO109I RGGNCCY 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 520
EheI GGCGCC 1 cut(s) 520
FaiI YATR 2 cut(s) 147, 165
FaqI GGGAC 3 cut(s) 277, 374, 591
Fnu4HI GCNGC 3 cut(s) 350, 374, 397
FokI GGATG 2 cut(s) 520, 578
Fsp4HI GCNGC 3 cut(s) 350, 374, 397
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 201, 520
GluI GCNGC 3 cut(s) 350, 374, 397
GsuI CTGGAG 2 cut(s) 210, 437
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 3 cut(s) 422, 551, 593
HapII CCGG 3 cut(s) 377, 385, 392
HgaI GACGC 2 cut(s) 130, 654
HhaI GCGC 2 cut(s) 202, 521
Hin1I GRCGYC 2 cut(s) 519, 665
Hin6I GCGC 2 cut(s) 200, 519
HinP1I GCGC 2 cut(s) 200, 519
HinfI GANTC 5 cut(s) 122, 362, 403, 467, 646
HpaII CCGG 3 cut(s) 377, 385, 392
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 6 cut(s) 240, 247, 301, 455, 472, 670
Hpy188III TCNNGA 4 cut(s) 119, 478, 505, 600
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 2 cut(s) 518, 670
HpyAV CCTTC 2 cut(s) 76, 204
HpyCH4III ACNGT 2 cut(s) 253, 582
HpyCH4IV ACGT 2 cut(s) 611, 621
HpyCH4V TGCA 5 cut(s) 174, 268, 357, 399, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 433
HpyF3I CTNAG 3 cut(s) 405, 437, 648
HpySE526I ACGT 2 cut(s) 611, 621
Hsp92I GRCGYC 2 cut(s) 519, 665
HspAI GCGC 2 cut(s) 200, 519
KasI GGCGCC 1 cut(s) 518
KflI GGGWCCC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 474, 501
LmnI GCTCC 4 cut(s) 68, 172, 229, 301
Lsp1109I GCAGC 2 cut(s) 383, 385
LweI GCATC 3 cut(s) 255, 498, 624
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 611, 621
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 476, 503
MboI GATC 2 cut(s) 474, 501
MboII GAAGA 4 cut(s) 44, 61, 331, 655
MflI RGATCY 1 cut(s) 474
MluCI AATT 2 cut(s) 284, 595
Mly113I GGCGCC 1 cut(s) 519
MlyI GAGTC 5 cut(s) 131, 371, 397, 461, 640
MmeI TCCRAC 2 cut(s) 279, 648
MroXI GAANNNNTTC 2 cut(s) 193, 485
MseI TTAA 1 cut(s) 20
MspI CCGG 3 cut(s) 377, 385, 392
MspR9I CCNGG 3 cut(s) 386, 392, 393
Mva1269I GAATGC 1 cut(s) 183
MvnI CGCG 3 cut(s) 200, 315, 338
MwoI GCNNNNNNNGC 2 cut(s) 180, 433
NarI GGCGCC 1 cut(s) 519
NciI CCSGG 3 cut(s) 386, 392, 393
NdeII GATC 2 cut(s) 474, 501
NlaIV GGNNCC 6 cut(s) 225, 303, 389, 390, 452, 520
NmeAIII GCCGAG 4 cut(s) 349, 448, 547, 552
NspV TTCGAA 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 2 cut(s) 476, 519
PctI GAATGC 1 cut(s) 183
PdmI GAANNNNTTC 2 cut(s) 193, 485
PkrI GCNGC 3 cut(s) 351, 375, 398
PleI GAGTC 5 cut(s) 130, 370, 397, 461, 640
PluTI GGCGCC 1 cut(s) 522
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
PpsI GAGTC 5 cut(s) 130, 370, 397, 461, 640
Ppu21I YACGTR 1 cut(s) 612
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
PspCI CACGTG 1 cut(s) 612
PspN4I GGNNCC 6 cut(s) 225, 303, 389, 390, 452, 520
PspPI GGNCC 3 cut(s) 240, 388, 549
PspPPI RGGWCCY 1 cut(s) 388
PsuI RGATCY 1 cut(s) 474
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 350, 374, 397
Sau3AI GATC 2 cut(s) 474, 501
Sau96I GGNCC 3 cut(s) 240, 388, 549
SchI GAGTC 5 cut(s) 131, 371, 397, 461, 640
ScrFI CCNGG 3 cut(s) 386, 392, 393
SfaNI GCATC 3 cut(s) 255, 498, 624
SfoI GGCGCC 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 187
SinI GGWCC 2 cut(s) 240, 388
SlaI CTCGAG 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 284, 595
SsiI CCGC 5 cut(s) 198, 257, 313, 338, 350
SspDI GGCGCC 1 cut(s) 518
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 384, 390, 391
TaaI ACNGT 2 cut(s) 253, 582
TaiI ACGT 2 cut(s) 614, 624
TaqI TCGA 5 cut(s) 120, 125, 187, 479, 513
TasI AATT 2 cut(s) 284, 595
TauI GCSGC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 364
TseI GCWGC 2 cut(s) 373, 396
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 233, 600
TspMI CCCGGG 1 cut(s) 391
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 240, 388
XapI RAATTY 1 cut(s) 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XhoI CTCGAG 1 cut(s) 119
XmaI CCCGGG 1 cut(s) 391
XmnI GAANNNNTTC 2 cut(s) 193, 485
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.