Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

44135878 .. 44136415

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0268600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGGAATGCTCAAGTTTCTGTTCCTCCTCCTACACGGCCTCCTCCAAGAACTGGTCCTAATTACACTCGTGGGGGACATGATACTGATCGACATGCATATGCCAACATGAAGAAGGATAATCGTGACCAAATTCCAGGAGTAGGAGTGCAGAAGCAAACGCCCGTCATCACCTCTGATGAGGCTGCGCGACGCTACGGTGGGGTAGTCATTACTGAAATATACGGTACTGCTACGAATAAAACTGCGATCAATCGTAATTGGCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

90

Amino Acids

9.95

Weight (kDa)

10.08

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccII	CGCG	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	53, 143
AjnI	CCWGG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	87
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 143
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	53, 143
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	2 cut(s)	18, 33
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	53, 143
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	88, 249
BspANI	GGCC	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	88, 249
BssSI	CACGAG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	200, 227
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	91, 252
BstMBI	GATC	2 cut(s)	88, 249
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	136
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	3 cut(s)	80, 95, 109
CviJI	RGCY	2 cut(s)	40, 185
CviKI_1	RGCY	2 cut(s)	40, 185
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	90, 251
DpnII	GATC	2 cut(s)	88, 249
Eco47I	GGWCC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	3 cut(s)	83, 98, 112
FaiI	YATR	6 cut(s)	81, 96, 100, 102, 110, 223
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	3 cut(s)	79, 94, 108
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	83, 98, 112
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	200, 227
HpyCH4V	TGCA	2 cut(s)	98, 151
Hsp92II	CATG	3 cut(s)	83, 98, 112
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	88, 249
LpnPI	CCDG	3 cut(s)	39, 123, 150
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	90, 251
MboI	GATC	2 cut(s)	88, 249
MboII	GAAGA	1 cut(s)	124
MluCI	AATT	3 cut(s)	61, 132, 259
MnlI	CCTC	6 cut(s)	36, 39, 51, 54, 175, 184
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	2 cut(s)	88, 249
NlaIII	CATG	3 cut(s)	83, 98, 112
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	271
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	88, 249
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	1 cut(s)	176
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	61, 132, 259
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	200, 227
TaqI	TCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	61, 132, 259
Tru1I	TTAA	1 cut(s)	271
Tru9I	TTAA	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.