Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

27555474 .. 27558036

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAACTCCACCACCCCATTAACACCAACACCACTCCCTACTTTCCCTCCCTTCTTCTTCCCCACTCACTCCTTAAACCCTAAACGCAAACCAAACGACAGAAAAAATCTCTGCTCGACATCAATCAAATGCGTCAGCAACACCGGCGCTGCCTTCAGTTCCCGTCATGCTATCAAACCAAATATTATTCACAACCCTTGCGCGCTGGCGTCTTGCTTGGCGGAGCCTCCAGCCTCTTCACCGCTCGTTGCGGACAAGGTGAAGATACTCGTCTTGGAATTCAAGGCCTTATCGGAGCCGATAGACAGGGTGAAGAGGCTGCTACACTACGCGGCGAACCTGCCGCCGTGTAGAGAGTTGACTAGGGAGCCGGAGAGCCGGGTGCCGGGCTGCACGACGCAGGTGTGGATGGAGGCCGAGCTTGACGAGCTGGGAAGGATGAGGTTTAGAGCAGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATATGGATGCTCGACGGCGCCGAGCCGAGGGAGGTGTTGGAAATAAGGGGGAAGGATTTGGAAGATGTGAATGTGGGACTGTATGGTAAGGCTAATTCGAGAGTGAACACATGGCACAACGTGTTGTTGGCGATGCAGAGGAAGACTCGGGATTTGGTTACGGCGGCGGAGAGATCGTCGGAGCAGCGGCCGTCTGCCTTTTCTGTTTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

237

Amino Acids

26.29

Weight (kDa)

8.58

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	93 - 212	2.9e-27	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	2 cut(s)	348, 391
AccB1I	GGYRCC	2 cut(s)	382, 512
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	2 cut(s)	203, 332
AciI	CCGC	8 cut(s)	221, 242, 251, 332, 344, 659, 662, 682
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	2 cut(s)	209, 513
AdeI	CACNNNGTG	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	385, 522
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	2 cut(s)	421, 430
AluI	AGCT	2 cut(s)	421, 430
Ama87I	CYCGRG	1 cut(s)	642
AoxI	GGCC	3 cut(s)	285, 414, 683
ApeKI	GCWGC	4 cut(s)	149, 319, 390, 679
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	4 cut(s)	149, 203, 205, 515
AsuC2I	CCSGG	2 cut(s)	380, 387
AsuHPI	GGTGA	3 cut(s)	231, 271, 322
AvaI	CYCGRG	1 cut(s)	642
BanI	GGYRCC	2 cut(s)	382, 512
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	4 cut(s)	136, 306, 377, 691
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	4 cut(s)	331, 526, 670, 672
BcnI	CCSGG	2 cut(s)	380, 387
BfaI	CTAG	1 cut(s)	363
BfoI	RGCGCY	2 cut(s)	150, 516
BfuAI	ACCTGC	2 cut(s)	348, 391
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	8 cut(s)	150, 320, 333, 344, 391, 660, 680, 683
BlsI	GCNGC	8 cut(s)	151, 321, 334, 345, 392, 661, 681, 684
Bme1390I	CCNGG	2 cut(s)	380, 387
BmeT110I	CYCGRG	1 cut(s)	642
BmiI	GGNNCC	5 cut(s)	225, 297, 369, 384, 514
BmrFI	CCNGG	2 cut(s)	380, 387
BmsI	GCATC	2 cut(s)	492, 618
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	2 cut(s)	380, 387
BsaHI	GRCGYC	2 cut(s)	209, 513
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 522
Bse118I	RCCGGY	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	3 cut(s)	414, 444, 507
BseLI	CCNNNNNNNGG	2 cut(s)	385, 522
BsePI	GCGCGC	1 cut(s)	201
BseX3I	CGGCCG	1 cut(s)	683
BseXI	GCAGC	4 cut(s)	136, 306, 377, 691
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	203, 332
Bsh1285I	CGRYCG	1 cut(s)	686
BshFI	GGCC	3 cut(s)	287, 416, 685
BshNI	GGYRCC	2 cut(s)	382, 512
BsiEI	CGRYCG	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	4 cut(s)	144, 371, 379, 386
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	385, 522
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	287, 416, 685
BsoBI	CYCGRG	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	468, 668
BspACI	CCGC	8 cut(s)	221, 242, 251, 332, 344, 659, 662, 682
BspANI	GGCC	3 cut(s)	287, 416, 685
BspFNI	CGCG	2 cut(s)	203, 332
BspLI	GGNNCC	5 cut(s)	225, 297, 369, 384, 514
BspMI	ACCTGC	2 cut(s)	348, 391
BspT107I	GGYRCC	2 cut(s)	382, 512
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	521
BssHII	GCGCGC	1 cut(s)	201
BssMI	GATC	2 cut(s)	468, 668
BssNI	GRCGYC	2 cut(s)	209, 513
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	241, 308
BstACI	GRCGYC	2 cut(s)	209, 513
BstC8I	GCNNGC	2 cut(s)	203, 207
BstF5I	GGATG	3 cut(s)	414, 444, 507
BstFNI	CGCG	2 cut(s)	203, 332
BstH2I	RGCGCY	2 cut(s)	150, 516
BstHHI	GCGC	4 cut(s)	149, 203, 205, 515
BstKTI	GATC	2 cut(s)	471, 671
BstMBI	GATC	2 cut(s)	468, 668
BstMCI	CGRYCG	1 cut(s)	686
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 427
BstSCI	CCNGG	2 cut(s)	378, 385
BstUI	CGCG	2 cut(s)	203, 332
BstV1I	GCAGC	4 cut(s)	136, 306, 377, 691
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BstZI	CGGCCG	1 cut(s)	683
BsuRI	GGCC	3 cut(s)	287, 416, 685
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	3 cut(s)	414, 444, 507
BveI	ACCTGC	2 cut(s)	348, 391
Cac8I	GCNNGC	2 cut(s)	203, 207
CfoI	GCGC	4 cut(s)	149, 203, 205, 515
Cfr10I	RCCGGY	1 cut(s)	143
CseI	GACGC	3 cut(s)	121, 198, 406
CviAII	CATG	2 cut(s)	167, 606
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	2 cut(s)	470, 670
DpnII	GATC	2 cut(s)	468, 668
DraIII	CACNNNGTG	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	683
EagI	CGGCCG	1 cut(s)	683
Eam1104I	CTCTTC	2 cut(s)	241, 308
EarI	CTCTTC	2 cut(s)	241, 308
EciI	GGCGGA	2 cut(s)	236, 677
EclXI	CGGCCG	1 cut(s)	683
Eco147I	AGGCCT	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	642
EcoRI	GAATTC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
FaeI	CATG	2 cut(s)	170, 609
FaiI	YATR	4 cut(s)	168, 499, 579, 607
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	2 cut(s)	166, 605
Fnu4HI	GCNGC	8 cut(s)	150, 320, 333, 344, 391, 660, 680, 683
FokI	GGATG	3 cut(s)	421, 451, 514
Fsp4HI	GCNGC	8 cut(s)	150, 320, 333, 344, 391, 660, 680, 683
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	4 cut(s)	148, 202, 204, 514
GluI	GCNGC	8 cut(s)	150, 320, 333, 344, 391, 660, 680, 683
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	2 cut(s)	150, 516
HaeIII	GGCC	3 cut(s)	287, 416, 685
HapII	CCGG	4 cut(s)	144, 371, 379, 386
HgaI	GACGC	3 cut(s)	121, 198, 406
HhaI	GCGC	4 cut(s)	149, 203, 205, 515
Hin1I	GRCGYC	2 cut(s)	209, 513
Hin1II	CATG	2 cut(s)	170, 609
Hin6I	GCGC	4 cut(s)	147, 201, 203, 513
HinP1I	GCGC	4 cut(s)	147, 201, 203, 513
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	461, 640
HpaII	CCGG	4 cut(s)	144, 371, 379, 386
HphI	GGTGA	3 cut(s)	231, 271, 322
Hpy166II	GTNNAC	2 cut(s)	360, 601
Hpy188I	TCNGA	3 cut(s)	295, 466, 676
Hpy188III	TCNNGA	3 cut(s)	472, 594, 644
Hpy8I	GTNNAC	2 cut(s)	360, 601
Hpy99I	CGWCG	3 cut(s)	400, 512, 676
HpyAV	CCTTC	4 cut(s)	61, 163, 429, 541
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	2 cut(s)	393, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 427
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	2 cut(s)	209, 513
Hsp92II	CATG	2 cut(s)	170, 609
HspAI	GCGC	4 cut(s)	147, 201, 203, 513
KasI	GGCGCC	1 cut(s)	512
Kzo9I	GATC	2 cut(s)	468, 668
LmnI	GCTCC	4 cut(s)	223, 295, 367, 676
Lsp1109I	GCAGC	4 cut(s)	136, 306, 377, 691
LweI	GCATC	2 cut(s)	492, 618
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	2 cut(s)	470, 670
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	468, 668
MboII	GAAGA	7 cut(s)	46, 49, 228, 274, 325, 569, 649
MflI	RGATCY	1 cut(s)	468
MluCI	AATT	2 cut(s)	278, 589
Mly113I	GGCGCC	1 cut(s)	513
MlyI	GAGTC	2 cut(s)	455, 634
MmeI	TCCRAC	2 cut(s)	513, 654
MnlI	CCTC	9 cut(s)	57, 237, 244, 309, 406, 435, 516, 520, 627
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	2 cut(s)	20, 74
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	4 cut(s)	144, 371, 379, 386
MspR9I	CCNGG	2 cut(s)	380, 387
MvnI	CGCG	2 cut(s)	203, 332
MwoI	GCNNNNNNNGC	2 cut(s)	144, 427
NarI	GGCGCC	1 cut(s)	513
NciI	CCSGG	2 cut(s)	380, 387
NdeII	GATC	2 cut(s)	468, 668
NlaIII	CATG	2 cut(s)	170, 609
NlaIV	GGNNCC	5 cut(s)	225, 297, 369, 384, 514
NmeAIII	GCCGAG	3 cut(s)	442, 541, 546
PaqCI	CACCTGC	1 cut(s)	391
PauI	GCGCGC	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	470, 513
PdmI	GAANNNNTTC	1 cut(s)	479
PkrI	GCNGC	8 cut(s)	151, 321, 334, 345, 392, 661, 681, 684
PleI	GAGTC	2 cut(s)	455, 634
PluTI	GGCGCC	1 cut(s)	516
PpsI	GAGTC	2 cut(s)	455, 634
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	5 cut(s)	225, 297, 369, 384, 514
PsuI	RGATCY	1 cut(s)	468
PteI	GCGCGC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	20, 74
SatI	GCNGC	8 cut(s)	150, 320, 333, 344, 391, 660, 680, 683
Sau3AI	GATC	2 cut(s)	468, 668
SchI	GAGTC	2 cut(s)	455, 634
ScrFI	CCNGG	2 cut(s)	380, 387
SetI	ASST	8 cut(s)	261, 342, 405, 423, 432, 446, 531, 618
SfaNI	GCATC	2 cut(s)	492, 618
SfoI	GGCGCC	1 cut(s)	514
SgrAI	CRCCGGYG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	278, 589
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	8 cut(s)	221, 242, 251, 332, 344, 659, 662, 682
SspDI	GGCGCC	1 cut(s)	512
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	378, 385
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	116, 473, 507, 593
TasI	AATT	2 cut(s)	278, 589
TauI	GCSGC	4 cut(s)	335, 346, 662, 685
Tru1I	TTAA	2 cut(s)	20, 74
Tru9I	TTAA	2 cut(s)	20, 74
TseI	GCWGC	4 cut(s)	149, 319, 390, 679
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.