Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

60508555 .. 60508968

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG346500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAACGGCTGGTTTTGGAATTCAAGTCTCTGACGGAGCCGATAGACCGCGTGAAGAGGCTTTTACACTACGCGGCGAACCTGCCGCCGTGCAGCGAGTCGGCTCGGCAGCCGGAGAGCCGGGTCCCGGGCTGCACGACTCAGGTGTGGCTGGAGGCCGAGCTGGACGAGCTGGGGCGAATGAGGTTCTGGGCCGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATTTGGATGCTTGACGGCGCCGAGCCGAGGGAGGTCTTGGAAATAAAGGCCAAAGATTTGGAGGATGTGAATGTGGGACTGTACGGAAAGGCCAATTCCAGAGTGAACACATGGCACAACGTGTTGTTGGCGATGCAGAGGAAGACTCAGGCTTTGGTTACGGTGGCGGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

5.74

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	7 - 126	9.6e-30	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	254
AccII	CGCG	2 cut(s)	51, 74
AciI	CCGC	4 cut(s)	49, 74, 86, 404
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	127, 264
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	163, 172
AluI	AGCT	2 cut(s)	163, 172
Alw26I	GTCTC	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	4 cut(s)	156, 192, 285, 327
ApeKI	GCWGC	3 cut(s)	93, 109, 132
ApoI	RAATTY	1 cut(s)	20
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	124, 192
AsuC2I	CCSGG	3 cut(s)	122, 128, 129
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	105, 119, 121
BceAI	ACGGC	3 cut(s)	23, 73, 268
BcnI	CCSGG	3 cut(s)	122, 128, 129
BcoDI	GTCTC	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	5 cut(s)	75, 86, 94, 110, 133
BlsI	GCNGC	5 cut(s)	76, 87, 95, 111, 134
Bme1390I	CCNGG	3 cut(s)	122, 128, 129
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	124, 192
BmiI	GGNNCC	4 cut(s)	39, 125, 126, 256
BmrFI	CCNGG	3 cut(s)	122, 128, 129
BmsI	GCATC	2 cut(s)	234, 360
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	173
BpuMI	CCSGG	3 cut(s)	122, 128, 129
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	127, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 264
BseDI	CCNNGG	2 cut(s)	127, 263
BseGI	GGATG	2 cut(s)	249, 307
BseLI	CCNNNNNNNGG	2 cut(s)	127, 264
BseMII	CTCAG	2 cut(s)	155, 398
BseXI	GCAGC	3 cut(s)	105, 119, 121
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	2 cut(s)	112, 118
Bsh1236I	CGCG	2 cut(s)	51, 74
BshFI	GGCC	4 cut(s)	158, 194, 287, 329
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	113, 121, 128
BslFI	GGGAC	2 cut(s)	110, 327
BslI	CCNNNNNNNGG	2 cut(s)	127, 264
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	110, 327
BsnI	GGCC	4 cut(s)	158, 194, 287, 329
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	4 cut(s)	49, 74, 86, 404
BspANI	GGCC	4 cut(s)	158, 194, 287, 329
BspCNI	CTCAG	2 cut(s)	154, 397
BspFNI	CGCG	2 cut(s)	51, 74
BspLI	GGNNCC	4 cut(s)	39, 125, 126, 256
BspMI	ACCTGC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	127, 263
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	318, 400
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	141, 384
BstF5I	GGATG	2 cut(s)	249, 307
BstFNI	CGCG	2 cut(s)	51, 74
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	120, 126, 127
BstUI	CGCG	2 cut(s)	51, 74
BstV1I	GCAGC	3 cut(s)	105, 119, 121
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	158, 194, 287, 329
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	249, 307
BveI	ACCTGC	1 cut(s)	90
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	124, 192
Cfr9I	CCCGGG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	348
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	141, 384
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
FaeI	CATG	1 cut(s)	351
FaiI	YATR	1 cut(s)	349
FaqI	GGGAC	2 cut(s)	110, 327
FatI	CATG	1 cut(s)	347
Fnu4HI	GCNGC	5 cut(s)	75, 86, 94, 110, 133
FokI	GGATG	2 cut(s)	256, 314
Fsp4HI	GCNGC	5 cut(s)	75, 86, 94, 110, 133
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	5 cut(s)	75, 86, 94, 110, 133
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	158, 194, 287, 329
HapII	CCGG	3 cut(s)	113, 121, 128
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	4 cut(s)	98, 139, 203, 382
HpaII	CCGG	3 cut(s)	113, 121, 128
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	33, 208
Hpy188III	TCNNGA	2 cut(s)	214, 336
Hpy8I	GTNNAC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	318, 400
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	4, 93, 135, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	141, 384
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	1 cut(s)	255
KasI	GGCGCC	1 cut(s)	254
KflI	GGGWCCC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	3 cut(s)	105, 119, 121
LweI	GCATC	2 cut(s)	234, 360
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	67, 391
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	2 cut(s)	20, 331
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	4 cut(s)	107, 133, 197, 376
MnlI	CCTC	7 cut(s)	51, 148, 177, 258, 262, 292, 369
MroXI	GAANNNNTTC	1 cut(s)	221
MspI	CCGG	3 cut(s)	113, 121, 128
MspR9I	CCNGG	3 cut(s)	122, 128, 129
MvnI	CGCG	2 cut(s)	51, 74
MwoI	GCNNNNNNNGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	122, 128, 129
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	4 cut(s)	39, 125, 126, 256
NmeAIII	GCCGAG	4 cut(s)	85, 184, 283, 288
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	76, 87, 95, 111, 134
PleI	GAGTC	4 cut(s)	106, 133, 197, 376
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	4 cut(s)	106, 133, 197, 376
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	39, 125, 126, 256
PspPI	GGNCC	2 cut(s)	124, 192
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SatI	GCNGC	5 cut(s)	75, 86, 94, 110, 133
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	124, 192
SchI	GAGTC	4 cut(s)	107, 133, 197, 376
ScrFI	CCNGG	3 cut(s)	122, 128, 129
SetI	ASST	7 cut(s)	84, 147, 165, 174, 188, 273, 360
SfaNI	GCATC	2 cut(s)	234, 360
SfoI	GGCGCC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	124
SmaI	CCCGGG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	20, 331
SsiI	CCGC	4 cut(s)	49, 74, 86, 404
SspDI	GGCGCC	1 cut(s)	254
StyD4I	CCNGG	3 cut(s)	120, 126, 127
TaaI	ACNGT	2 cut(s)	318, 400
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	20, 331
TauI	GCSGC	2 cut(s)	77, 88
TseI	GCWGC	3 cut(s)	93, 109, 132
TspGWI	ACGGA	2 cut(s)	50, 336
TspMI	CCCGGG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.