Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000759.1

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Reverse (-)

28853 .. 29530

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000759.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaactcatccaccccattaagaccaacactccccagtttctctccctctcttcccccctgctccttcttcttcactcactcctcaaaccctaaatcgcaacgaaatgagaggaatctcgcgttgaagtcaatcaaatgcgtccatagtggttttggttcgtatgctccttgcaaatcaagcattcgaaacccttccgcgctgtcatcttgcttgacggaggctccagctctggttcggacctctgacacggttgcggataagatgcagcggctggttttggaattcaagtctctgtcggagcccatagaccgcgtgaagaggcttttacactacgcggagaacctgccgccgtgcagcgagtcggctcggcagccggagagccgggtcccgggctgcacgactcaggtgtggctggaggccgagctggacgagctgaggcgaatgaggttccgagccgatagcgactcggagatctcaaaagggttctgctcgtgcctgatctggatgctcgacggcgccgagccgagggaggtcttggaaataaaggccaaagatttggaggatgtgaatgtgggactgtacggaaaggccaattccagagtgaacacgtggcaaaatgtgttgttggcgatgcagaggaagactcaggctttggtttcggcggcggagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

225

Amino Acids

25.12

Weight (kDa)

8.8

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	518
AccII	CGCG	4 cut(s)	122, 200, 315, 338
AciI	CCGC	8 cut(s)	198, 257, 271, 313, 338, 350, 665, 668
AcsI	RAATTY	1 cut(s)	284
AcvI	CACGTG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	2 cut(s)	391, 528
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	127, 289
AluBI	AGCT	3 cut(s)	230, 427, 436
AluI	AGCT	3 cut(s)	230, 427, 436
Alw26I	GTCTC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	420, 549, 591
ApeKI	GCWGC	4 cut(s)	268, 357, 373, 396
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	202, 521
AspS9I	GGNCC	2 cut(s)	240, 388
AsuC2I	CCSGG	3 cut(s)	386, 392, 393
AsuII	TTCGAA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	240, 388
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	493
BbrPI	CACGTG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	650
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	280, 369, 383, 385
BceAI	ACGGC	2 cut(s)	337, 532
BcnI	CCSGG	3 cut(s)	386, 392, 393
BcoDI	GTCTC	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	7 cut(s)	269, 272, 350, 358, 374, 397, 666
BlsI	GCNGC	7 cut(s)	270, 273, 351, 359, 375, 398, 667
Bme1390I	CCNGG	3 cut(s)	386, 392, 393
Bme18I	GGWCC	2 cut(s)	240, 388
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	240, 388
BmiI	GGNNCC	6 cut(s)	225, 303, 389, 390, 452, 520
BmrFI	CCNGG	3 cut(s)	386, 392, 393
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	255, 498, 624
BmuI	ACTGGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	2 cut(s)	210, 437
Bpu10I	CCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	187
BpuMI	CCSGG	3 cut(s)	386, 392, 393
BsaAI	YACGTR	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	391, 527
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 528
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	391, 527
BseGI	GGATG	3 cut(s)	8, 513, 571
BseLI	CCNNNNNNNGG	2 cut(s)	391, 528
BseMII	CTCAG	3 cut(s)	419, 428, 662
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	280, 369, 383, 385
BsgI	GTGCAG	2 cut(s)	376, 382
Bsh1236I	CGCG	4 cut(s)	122, 200, 315, 338
BshFI	GGCC	3 cut(s)	422, 551, 593
BshNI	GGYRCC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	3 cut(s)	377, 385, 392
BslFI	GGGAC	2 cut(s)	374, 591
BslI	CCNNNNNNNGG	2 cut(s)	391, 528
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	374, 591
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	422, 551, 593
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	474, 501
BspACI	CCGC	8 cut(s)	198, 257, 271, 313, 338, 350, 665, 668
BspANI	GGCC	3 cut(s)	422, 551, 593
BspCNI	CTCAG	3 cut(s)	418, 429, 661
BspFNI	CGCG	4 cut(s)	122, 200, 315, 338
BspLI	GGNNCC	6 cut(s)	225, 303, 389, 390, 452, 520
BspMI	ACCTGC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	391, 527
BssMI	GATC	2 cut(s)	474, 501
BssNI	GRCGYC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	253, 582
Bst6I	CTCTTC	2 cut(s)	57, 314
BstACI	GRCGYC	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	405, 437, 648
BstF5I	GGATG	3 cut(s)	8, 513, 571
BstFNI	CGCG	4 cut(s)	122, 200, 315, 338
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	202, 521
BstKTI	GATC	2 cut(s)	477, 504
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	474, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 433
BstSCI	CCNGG	3 cut(s)	384, 390, 391
BstUI	CGCG	4 cut(s)	122, 200, 315, 338
BstV1I	GCAGC	4 cut(s)	280, 369, 383, 385
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	422, 551, 593
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	8, 513, 571
BveI	ACCTGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	202, 521
Cfr13I	GGNCC	2 cut(s)	240, 388
Cfr9I	CCCGGG	1 cut(s)	391
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	583
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	3 cut(s)	405, 437, 648
DinI	GGCGCC	1 cut(s)	520
DpnI	GATC	2 cut(s)	476, 503
DpnII	GATC	2 cut(s)	474, 501
Eam1104I	CTCTTC	2 cut(s)	57, 314
EarI	CTCTTC	2 cut(s)	57, 314
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	240, 388
Eco72I	CACGTG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	306
EgeI	GGCGCC	1 cut(s)	520
EheI	GGCGCC	1 cut(s)	520
FaiI	YATR	3 cut(s)	147, 165, 308
FaqI	GGGAC	2 cut(s)	374, 591
Fnu4HI	GCNGC	7 cut(s)	269, 272, 350, 358, 374, 397, 666
FokI	GGATG	2 cut(s)	520, 578
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	7 cut(s)	269, 272, 350, 358, 374, 397, 666
GlaI	GCGC	2 cut(s)	201, 520
GluI	GCNGC	7 cut(s)	269, 272, 350, 358, 374, 397, 666
GsuI	CTGGAG	2 cut(s)	210, 437
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	422, 551, 593
HapII	CCGG	3 cut(s)	377, 385, 392
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	202, 521
Hin1I	GRCGYC	1 cut(s)	519
Hin6I	GCGC	2 cut(s)	200, 519
HinP1I	GCGC	2 cut(s)	200, 519
HinfI	GANTC	5 cut(s)	115, 362, 403, 467, 646
HpaII	CCGG	3 cut(s)	377, 385, 392
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	5 cut(s)	240, 247, 301, 455, 472
Hpy188III	TCNNGA	2 cut(s)	505, 600
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	76, 204
HpyCH4III	ACNGT	2 cut(s)	253, 582
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	5 cut(s)	174, 268, 357, 399, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 433
HpyF3I	CTNAG	3 cut(s)	405, 437, 648
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	519
HspAI	GCGC	2 cut(s)	200, 519
KasI	GGCGCC	1 cut(s)	518
KflI	GGGWCCC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	474, 501
LmnI	GCTCC	4 cut(s)	68, 172, 229, 301
Lsp1109I	GCAGC	4 cut(s)	280, 369, 383, 385
LweI	GCATC	3 cut(s)	255, 498, 624
MaeII	ACGT	1 cut(s)	611
MalI	GATC	2 cut(s)	476, 503
MboI	GATC	2 cut(s)	474, 501
MboII	GAAGA	5 cut(s)	44, 61, 64, 331, 655
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	284, 595
Mly113I	GGCGCC	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	371, 397, 461, 640
MmeI	TCCRAC	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	3 cut(s)	377, 385, 392
MspR9I	CCNGG	3 cut(s)	386, 392, 393
Mva1269I	GAATGC	1 cut(s)	183
MvnI	CGCG	4 cut(s)	122, 200, 315, 338
MwoI	GCNNNNNNNGC	2 cut(s)	180, 433
NarI	GGCGCC	1 cut(s)	519
NciI	CCSGG	3 cut(s)	386, 392, 393
NdeII	GATC	2 cut(s)	474, 501
NlaIV	GGNNCC	6 cut(s)	225, 303, 389, 390, 452, 520
NmeAIII	GCCGAG	4 cut(s)	349, 448, 547, 552
NspV	TTCGAA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	7 cut(s)	270, 273, 351, 359, 375, 398, 667
PleI	GAGTC	4 cut(s)	370, 397, 461, 640
PluTI	GGCGCC	1 cut(s)	522
PmaCI	CACGTG	1 cut(s)	612
PmlI	CACGTG	1 cut(s)	612
PpsI	GAGTC	4 cut(s)	370, 397, 461, 640
Ppu21I	YACGTR	1 cut(s)	612
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	612
PspN4I	GGNNCC	6 cut(s)	225, 303, 389, 390, 452, 520
PspPI	GGNCC	2 cut(s)	240, 388
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	7 cut(s)	269, 272, 350, 358, 374, 397, 666
Sau3AI	GATC	2 cut(s)	474, 501
Sau96I	GGNCC	2 cut(s)	240, 388
SchI	GAGTC	4 cut(s)	371, 397, 461, 640
ScrFI	CCNGG	3 cut(s)	386, 392, 393
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	232, 245, 348, 411, 429, 438, 452, 537, 614
SfaNI	GCATC	3 cut(s)	255, 498, 624
SfoI	GGCGCC	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	187
SinI	GGWCC	2 cut(s)	240, 388
SmaI	CCCGGG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	284, 595
SsiI	CCGC	8 cut(s)	198, 257, 271, 313, 338, 350, 665, 668
SspDI	GGCGCC	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	384, 390, 391
TaaI	ACNGT	2 cut(s)	253, 582
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	2 cut(s)	187, 513
TasI	AATT	2 cut(s)	284, 595
TauI	GCSGC	3 cut(s)	274, 352, 668
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	4 cut(s)	268, 357, 373, 396
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	233, 600
TspMI	CCCGGG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	240, 388
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.