Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

6981515 .. 6982225

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1098500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAACGCCACCGCATTTACAACAACAACACTCCCTCATTTCTCCTCCGCCCGCTCCGCCGCCGCCGAGTCATCGTCAAACCGCCAATTCCACAACCCTGTACCCGCCAAATTGAAACTCGACACCCAAGACAACAACATAAATTTCTTGTCCATCAAATGCATCCCCAGTCGAGGAATTCGAATCCCGAACGCGTTGGCTCTGACGGCGACGCAGGCTCGGCCGTCGAAGCCCACGGAGCAGGTGGCCGACAAGCTGAAACGCCTCGTTTTGGAATTCAAGTCTCTGTCGGAGCCAATTGACCGCGTGAAGCGGCTACTACACTACGCGGCGAGGCTCCCGCCGCACAGTGAGTGTGCGCGGAAGCCGGAGAGCCGGGTCCAGGGGTGCTCGACGCAGGTGTGGGTGGAGGCAGAGATGGACGAGGTGGGGAGGATGAGGTTCCGGGCGGACAGCGACTCGGAGATCGCAAAGGGGTTCTGCTCGTGCCTGATGTGGTTGCTGGACGGCGCGGAGGCGCGTGAGGTTCTGGCGGTGGAGGCGCGGGATTTGGACGACGTGAATGTGGGGGTGTACGGGAAGGTCAATTCGAGAGTGAACACGTGGCACAGCGTGCTGCTGGCGATGCAGAGGAAGACTCAGGCTTTGGTGGCGGAGCGAGAGCAGGGGATGCGGGGTGCTAATTCTTTCCTTGACGAGGTCAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

8.85

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	92 - 211	3e-27	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	232, 388
Acc36I	ACCTGC	2 cut(s)	232, 388
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
AcoI	YGGCCR	2 cut(s)	221, 246
AcsI	RAATTY	3 cut(s)	142, 177, 275
AcvI	CACGTG	1 cut(s)	603
AdeI	CACNNNGTG	1 cut(s)	613
AfaI	GTAC	2 cut(s)	102, 575
AfiI	CCNNNNNNNGG	4 cut(s)	173, 271, 382, 697
AflIII	ACRYGT	2 cut(s)	192, 600
AgsI	TTSAA	2 cut(s)	115, 280
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	288
AoxI	GGCC	2 cut(s)	221, 246
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	3 cut(s)	142, 177, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AspLEI	GCGC	4 cut(s)	361, 512, 520, 544
AspS9I	GGNCC	1 cut(s)	379
AsuC2I	CCSGG	2 cut(s)	377, 446
AsuII	TTCGAA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	484
BbrPI	CACGTG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	2 cut(s)	161, 412
BceAI	ACGGC	3 cut(s)	208, 222, 523
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	2 cut(s)	377, 446
BcoDI	GTCTC	1 cut(s)	288
BfuAI	ACCTGC	2 cut(s)	232, 388
BisI	GCNGC	6 cut(s)	60, 63, 314, 330, 344, 617
BlsI	GCNGC	6 cut(s)	61, 64, 315, 331, 345, 618
Bme1390I	CCNGG	3 cut(s)	377, 383, 446
Bme18I	GGWCC	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	4 cut(s)	294, 338, 380, 443
BmrFI	CCNGG	3 cut(s)	377, 383, 446
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	171, 615, 660
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
Bpu14I	TTCGAA	1 cut(s)	181
BpuMI	CCSGG	2 cut(s)	377, 446
BsaAI	YACGTR	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	234, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 271, 382, 697
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	234, 382
BseGI	GGATG	3 cut(s)	162, 441, 675
BseLI	CCNNNNNNNGG	4 cut(s)	173, 271, 382, 697
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	603
Bsh1236I	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	223, 248
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	368, 376, 445
BslI	CCNNNNNNNGG	4 cut(s)	173, 271, 382, 697
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	223, 248
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	465
BspANI	GGCC	2 cut(s)	223, 248
BspCNI	CTCAG	1 cut(s)	652
BspFNI	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
BspLI	GGNNCC	4 cut(s)	294, 338, 380, 443
BspMI	ACCTGC	2 cut(s)	232, 388
BspT104I	TTCGAA	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	234, 382
BssMI	GATC	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	350
BstAPI	GCANNNNNTGC	2 cut(s)	613, 670
BstBAI	YACGTR	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	52, 216, 614, 621
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	3 cut(s)	162, 441, 675
BstFNI	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
BstHHI	GCGC	4 cut(s)	361, 512, 520, 544
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	465
BstMCI	CGRYCG	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	375, 381, 444
BstUI	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	641
BstZI	CGGCCG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	223, 248
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	638
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	162, 441, 675
BtsIMutI	CAGTG	1 cut(s)	355
BveI	ACCTGC	2 cut(s)	232, 388
Cac8I	GCNNGC	4 cut(s)	52, 216, 614, 621
CfoI	GCGC	4 cut(s)	361, 512, 520, 544
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	2 cut(s)	220, 403
Csp6I	GTAC	2 cut(s)	101, 574
CviQI	GTAC	2 cut(s)	101, 574
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
DraIII	CACNNNGTG	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	221, 246
EagI	CGGCCG	1 cut(s)	221
EciI	GGCGGA	4 cut(s)	37, 46, 464, 668
EclXI	CGGCCG	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	177, 275
EcoRII	CCWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	164
FaiI	YATR	1 cut(s)	140
FauI	CCCGC	5 cut(s)	59, 112, 348, 537, 666
Fnu4HI	GCNGC	6 cut(s)	60, 63, 314, 330, 344, 617
FokI	GGATG	3 cut(s)	149, 448, 682
Fsp4HI	GCNGC	6 cut(s)	60, 63, 314, 330, 344, 617
GlaI	GCGC	4 cut(s)	360, 511, 519, 543
GluI	GCNGC	6 cut(s)	60, 63, 314, 330, 344, 617
HaeIII	GGCC	2 cut(s)	223, 248
HapII	CCGG	3 cut(s)	368, 376, 445
HgaI	GACGC	2 cut(s)	220, 403
HhaI	GCGC	4 cut(s)	361, 512, 520, 544
Hin6I	GCGC	4 cut(s)	359, 510, 518, 542
HinP1I	GCGC	4 cut(s)	359, 510, 518, 542
HinfI	GANTC	4 cut(s)	68, 183, 458, 637
HpaII	CCGG	3 cut(s)	368, 376, 445
Hpy166II	GTNNAC	2 cut(s)	574, 598
Hpy188I	TCNGA	3 cut(s)	204, 292, 463
Hpy188III	TCNNGA	2 cut(s)	187, 591
Hpy8I	GTNNAC	2 cut(s)	574, 598
Hpy99I	CGWCG	4 cut(s)	214, 229, 397, 560
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	558, 602
HpyCH4V	TGCA	2 cut(s)	162, 628
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	2 cut(s)	558, 602
HspAI	GCGC	4 cut(s)	359, 510, 518, 542
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	5 cut(s)	59, 238, 292, 342, 655
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	3 cut(s)	171, 615, 660
MaeII	ACGT	2 cut(s)	558, 602
MalI	GATC	1 cut(s)	467
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	465
MboII	GAAGA	1 cut(s)	646
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	8 cut(s)	86, 110, 142, 177, 275, 297, 586, 682
MluI	ACGCGT	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	77, 452, 631
MmeI	TCCRAC	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	1 cut(s)	709
MspI	CCGG	3 cut(s)	368, 376, 445
MspR9I	CCNGG	3 cut(s)	377, 383, 446
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	7 cut(s)	194, 306, 329, 361, 512, 520, 544
NciI	CCSGG	2 cut(s)	377, 446
NdeII	GATC	1 cut(s)	465
NlaIV	GGNNCC	4 cut(s)	294, 338, 380, 443
NmeAIII	GCCGAG	2 cut(s)	91, 199
NsiI	ATGCAT	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	181
PaqCI	CACCTGC	2 cut(s)	232, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	183
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	6 cut(s)	61, 64, 315, 331, 345, 618
PleI	GAGTC	3 cut(s)	76, 452, 631
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	3 cut(s)	76, 452, 631
Ppu21I	YACGTR	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	4 cut(s)	294, 338, 380, 443
PspPI	GGNCC	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	698
RsaI	GTAC	2 cut(s)	102, 575
RsaNI	GTAC	2 cut(s)	101, 574
SaqAI	TTAA	1 cut(s)	709
SatI	GCNGC	6 cut(s)	60, 63, 314, 330, 344, 617
Sau3AI	GATC	1 cut(s)	465
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	3 cut(s)	77, 452, 631
ScrFI	CCNGG	3 cut(s)	377, 383, 446
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	3 cut(s)	171, 615, 660
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	379
Sse9I	AATT	8 cut(s)	86, 110, 142, 177, 275, 297, 586, 682
StyD4I	CCNGG	3 cut(s)	375, 381, 444
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	561, 605
TaqI	TCGA	6 cut(s)	120, 172, 181, 227, 392, 590
TasI	AATT	8 cut(s)	86, 110, 142, 177, 275, 297, 586, 682
TauI	GCSGC	5 cut(s)	62, 65, 316, 332, 346
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	616
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	379
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	3 cut(s)	142, 177, 275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.