Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

55871535 .. 55872218

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAACTCATCCACCCCATTAAGACCAACACTCCCTAGTTTCTCTCCCTCTCTTCCCCCCTGCTCCTTCTTCTTCACTCACTCCTCAAACCCTAAATCGCAACAAAATGAGAGAATTCTCGCTTCGAAATCAATCAAGTGCGTCCACAATCGTGGTGGTTTTAGTTCGTATGCTCCTTGCAAATCAAGCATTCGAAACCCTTCCGCGCTGTCATCTTGCTTGACGGAGGCTCCAGCTCTGGTTCGGACCTCTGACACGGTTGCGGATAAGATGCAACTGCTGGTTTTGGAATTCAAGTCTCTGTCGGAGCCGATAGACCGCGTGAAGAGGCTTTTACACTACGCGGAGAACCTGCCGCCGTGCAGCGAGTCTGCTCGGCAGCCGGAGAGCCGGGTCCCGGGCTGCACGACTCAGGTGTGGCTGGAGGCCGAGCTGGACGAGCTGGGGCGAATGAGGTTCCGAGCCGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATCTGGATGCTCGACGGCGCCCAGCCGAGGGAGGTCTTGGAAATAAGGGCCAAAGATTTGGAGGATGTGAATGTGGGACTGTACGGAAAGGCCAATTCCAGAGTGAACACGTGGCACAACGTGTTGTTGGCGATGCAGAGGAAGACTCAGGCTTTGGTTACGGCGGCGGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

227

Amino Acids

25.24

Weight (kDa)

8.64

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	97 - 216	1.6e-29	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	3 cut(s)	206, 321, 344
AciI	CCGC	7 cut(s)	204, 263, 319, 344, 356, 671, 674
AcsI	RAATTY	2 cut(s)	114, 290
AcvI	CACGTG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	525
AdeI	CACNNNGTG	1 cut(s)	628
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	3 cut(s)	397, 534, 535
AflIII	ACRYGT	2 cut(s)	615, 627
AgsI	TTSAA	1 cut(s)	295
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	236, 433, 442
AluI	AGCT	3 cut(s)	236, 433, 442
Alw26I	GTCTC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	3 cut(s)	426, 555, 597
ApeKI	GCWGC	3 cut(s)	363, 379, 402
ApoI	RAATTY	2 cut(s)	114, 290
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
Asp700I	GAANNNNTTC	2 cut(s)	199, 491
AspLEI	GCGC	2 cut(s)	208, 527
AspS9I	GGNCC	3 cut(s)	246, 394, 555
AsuC2I	CCSGG	3 cut(s)	392, 398, 399
AsuII	TTCGAA	2 cut(s)	125, 193
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	246, 394
BanI	GGYRCC	1 cut(s)	524
BauI	CACGAG	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	656
BbvI	GCAGC	3 cut(s)	375, 389, 391
BceAI	ACGGC	2 cut(s)	343, 538
BcnI	CCSGG	3 cut(s)	392, 398, 399
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	5 cut(s)	356, 364, 380, 403, 672
BlsI	GCNGC	5 cut(s)	357, 365, 381, 404, 673
Bme1390I	CCNGG	3 cut(s)	392, 398, 399
Bme18I	GGWCC	2 cut(s)	246, 394
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	246, 394, 555
BmiI	GGNNCC	6 cut(s)	231, 309, 395, 396, 458, 526
BmrFI	CCNGG	3 cut(s)	392, 398, 399
BmsI	GCATC	3 cut(s)	261, 504, 630
BpiI	GAAGAC	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpmI	CTGGAG	2 cut(s)	216, 443
Bpu14I	TTCGAA	2 cut(s)	125, 193
BpuMI	CCSGG	3 cut(s)	392, 398, 399
BsaAI	YACGTR	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	397, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 214, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 534, 535
BseDI	CCNNGG	2 cut(s)	397, 533
BseGI	GGATG	3 cut(s)	8, 519, 577
BseLI	CCNNNNNNNGG	3 cut(s)	397, 534, 535
BseMII	CTCAG	2 cut(s)	425, 668
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	375, 389, 391
BseYI	CCCAGC	2 cut(s)	442, 528
BsgI	GTGCAG	2 cut(s)	382, 388
Bsh1236I	CGCG	3 cut(s)	206, 321, 344
BshFI	GGCC	3 cut(s)	428, 557, 599
BshNI	GGYRCC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	383, 391, 398
BslFI	GGGAC	2 cut(s)	380, 597
BslI	CCNNNNNNNGG	3 cut(s)	397, 534, 535
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	380, 597
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	428, 557, 599
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	2 cut(s)	125, 193
Bsp143I	GATC	2 cut(s)	480, 507
BspACI	CCGC	7 cut(s)	204, 263, 319, 344, 356, 671, 674
BspANI	GGCC	3 cut(s)	428, 557, 599
BspCNI	CTCAG	2 cut(s)	424, 667
BspFNI	CGCG	3 cut(s)	206, 321, 344
BspLI	GGNNCC	6 cut(s)	231, 309, 395, 396, 458, 526
BspMI	ACCTGC	1 cut(s)	360
BspT104I	TTCGAA	2 cut(s)	125, 193
BspT107I	GGYRCC	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	397, 533
BssMI	GATC	2 cut(s)	480, 507
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	259, 588
Bst6I	CTCTTC	2 cut(s)	57, 320
BstACI	GRCGYC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	618
BstBI	TTCGAA	2 cut(s)	125, 193
BstDEI	CTNAG	2 cut(s)	411, 654
BstF5I	GGATG	3 cut(s)	8, 519, 577
BstFNI	CGCG	3 cut(s)	206, 321, 344
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	208, 527
BstKTI	GATC	2 cut(s)	483, 510
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	480, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 439
BstSCI	CCNGG	3 cut(s)	390, 396, 397
BstUI	CGCG	3 cut(s)	206, 321, 344
BstV1I	GCAGC	3 cut(s)	375, 389, 391
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	1 cut(s)	480
BstXI	CCANNNNNNTGG	2 cut(s)	152, 565
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	428, 557, 599
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	8, 519, 577
BveI	ACCTGC	1 cut(s)	360
CfoI	GCGC	2 cut(s)	208, 527
Cfr13I	GGNCC	3 cut(s)	246, 394, 555
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	589
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	2 cut(s)	411, 654
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	2 cut(s)	482, 509
DpnII	GATC	2 cut(s)	480, 507
DraIII	CACNNNGTG	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	57, 320
EarI	CTCTTC	2 cut(s)	57, 320
Eco47I	GGWCC	2 cut(s)	246, 394
Eco72I	CACGTG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	2 cut(s)	114, 290
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
FaiI	YATR	1 cut(s)	171
FaqI	GGGAC	2 cut(s)	380, 597
Fnu4HI	GCNGC	5 cut(s)	356, 364, 380, 403, 672
FokI	GGATG	2 cut(s)	526, 584
Fsp4HI	GCNGC	5 cut(s)	356, 364, 380, 403, 672
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	207, 526
GluI	GCNGC	5 cut(s)	356, 364, 380, 403, 672
GsaI	CCCAGC	2 cut(s)	446, 532
GsuI	CTGGAG	2 cut(s)	216, 443
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	3 cut(s)	428, 557, 599
HapII	CCGG	3 cut(s)	383, 391, 398
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	208, 527
Hin1I	GRCGYC	1 cut(s)	525
Hin6I	GCGC	2 cut(s)	206, 525
HinP1I	GCGC	2 cut(s)	206, 525
HinfI	GANTC	4 cut(s)	368, 409, 473, 652
HpaII	CCGG	3 cut(s)	383, 391, 398
Hpy166II	GTNNAC	2 cut(s)	145, 613
Hpy188I	TCNGA	5 cut(s)	246, 253, 307, 461, 478
Hpy188III	TCNNGA	3 cut(s)	484, 511, 606
Hpy8I	GTNNAC	2 cut(s)	145, 613
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	76, 210
HpyCH4III	ACNGT	2 cut(s)	259, 588
HpyCH4IV	ACGT	2 cut(s)	617, 627
HpyCH4V	TGCA	5 cut(s)	180, 274, 363, 405, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 439
HpyF3I	CTNAG	2 cut(s)	411, 654
HpySE526I	ACGT	2 cut(s)	617, 627
Hsp92I	GRCGYC	1 cut(s)	525
HspAI	GCGC	2 cut(s)	206, 525
KasI	GGCGCC	1 cut(s)	524
KflI	GGGWCCC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	480, 507
LmnI	GCTCC	4 cut(s)	68, 178, 235, 307
Lsp1109I	GCAGC	3 cut(s)	375, 389, 391
LweI	GCATC	3 cut(s)	261, 504, 630
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	2 cut(s)	617, 627
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	482, 509
MboI	GATC	2 cut(s)	480, 507
MboII	GAAGA	5 cut(s)	44, 61, 64, 337, 661
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	3 cut(s)	114, 290, 601
Mly113I	GGCGCC	1 cut(s)	525
MlyI	GAGTC	4 cut(s)	377, 403, 467, 646
MmeI	TCCRAC	1 cut(s)	285
MroXI	GAANNNNTTC	2 cut(s)	199, 491
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	3 cut(s)	383, 391, 398
MspR9I	CCNGG	3 cut(s)	392, 398, 399
Mva1269I	GAATGC	1 cut(s)	189
MvnI	CGCG	3 cut(s)	206, 321, 344
MwoI	GCNNNNNNNGC	2 cut(s)	186, 439
NarI	GGCGCC	1 cut(s)	525
NciI	CCSGG	3 cut(s)	392, 398, 399
NdeII	GATC	2 cut(s)	480, 507
NlaIV	GGNNCC	6 cut(s)	231, 309, 395, 396, 458, 526
NmeAIII	GCCGAG	3 cut(s)	355, 454, 558
NspV	TTCGAA	2 cut(s)	125, 193
OliI	CACNNNNGTG	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	199, 491
PkrI	GCNGC	5 cut(s)	357, 365, 381, 404, 673
PleI	GAGTC	4 cut(s)	376, 403, 467, 646
PluTI	GGCGCC	1 cut(s)	528
PmaCI	CACGTG	1 cut(s)	618
PmlI	CACGTG	1 cut(s)	618
PpsI	GAGTC	4 cut(s)	376, 403, 467, 646
Ppu21I	YACGTR	1 cut(s)	618
PpuMI	RGGWCCY	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	394
PspCI	CACGTG	1 cut(s)	618
PspFI	CCCAGC	2 cut(s)	442, 528
PspN4I	GGNNCC	6 cut(s)	231, 309, 395, 396, 458, 526
PspPI	GGNCC	3 cut(s)	246, 394, 555
PspPPI	RGGWCCY	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	5 cut(s)	356, 364, 380, 403, 672
Sau3AI	GATC	2 cut(s)	480, 507
Sau96I	GGNCC	3 cut(s)	246, 394, 555
SchI	GAGTC	4 cut(s)	377, 403, 467, 646
ScrFI	CCNGG	3 cut(s)	392, 398, 399
SfaNI	GCATC	3 cut(s)	261, 504, 630
SfoI	GGCGCC	1 cut(s)	526
SfuI	TTCGAA	2 cut(s)	125, 193
SinI	GGWCC	2 cut(s)	246, 394
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	114, 290, 601
SsiI	CCGC	7 cut(s)	204, 263, 319, 344, 356, 671, 674
SspDI	GGCGCC	1 cut(s)	524
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	390, 396, 397
TaaI	ACNGT	2 cut(s)	259, 588
TaiI	ACGT	2 cut(s)	620, 630
TaqI	TCGA	4 cut(s)	125, 193, 485, 519
TasI	AATT	3 cut(s)	114, 290, 601
TauI	GCSGC	2 cut(s)	358, 674
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	3 cut(s)	363, 379, 402
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	239, 606
TspMI	CCCGGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	246, 394
XapI	RAATTY	2 cut(s)	114, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	397
XmnI	GAANNNNTTC	2 cut(s)	199, 491
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.