RchiOBHm_Chr4g0433411

SufE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015092
Physical Location & Seq
Forward (+)
57563179 .. 57566684
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40193

Sequence Viewer

Length: 888 bp
ATGCACCTGTGGCGGGAGATTAATCTGACTTTGTTGCGATACTCTCGTGGACCTCGGTCTGAATATTGTTCAGTCAAAACAGACGGTGCGCGGTTCAAGGATCCATCTCCAATTTTCTTGCTCTATCTCAGTCCCTTCATTCCTCAACTAACTAACTCCTCTCTAACATTTCCTGACCTTAATTTCTTTCCCTCTCCATCCAAACAAAACATGAACTCATCCACCCCATTAAGACCAACACTCCCCAGTTTCTGTCCCTCTCTTCCCCCCTGCTCCTTCTTCTTCACTCACTCCTCAAACCCTAAATCGCAACGAAATGAGAGGAATCTCGCGTTGAAGTCAATCAAATGCGTCCATAGTGGTTTTGGTTCGTATGCTCCTTGCAAATCAAGCATTCGAAACCCTTCCGCGCTGTCATCTTGCTTGACGGAGGCTCCAGCTCTGGTTCGGACCTCTGACACGGTTGCGGATAAGATGCAACGGCTGGTTTTGGAATTCAAGTCTCTGTCGGAGCCCATAGACCGCGTGAAGAGGCTTTTACACTACGCAGCGAACCTGCCGCCGTGCAGCGAGTCGGCTCGGCAGCCGGAGAGCCGGGTCCCGGGCTGCACGACTCAGGTGTGGCTGGAGGCCGAGCTGGACGAGCTGAGGCGAATGAGGTTCCGAGCCGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATCTGGATGCTCGACGGCGCCGAGCCGAGGGAGGTCTTGGAAATAAAGGCCAAGGATTTGGAGGATGTGAACGTGGGACTGTATGGAAAGGCCAATTCCAGAGTGAACACGTGGCAAAATGTGTTGTTGGCGATGCAGAGGAAGACTCAGGCTTTGGTTACGGCGGCGGAGAGATAG

Protein Analysis

295

Amino Acids

33.22

Weight (kDa)

9.11

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufE PF02657 165 - 284 5.2e-29 Fe-S metabolism associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67810
fragaria_vesca FvH4_4g25940 FvH4_4g25940
malus_domestica MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica Prupe.1G246900_v2.0.a1
pyrus_communis pycom13g08620
rosa_chinensis RchiOBHm_Chr4g0433411
rosa_laevigata RLG00000006755
rosa_multiflora Rmu_sc0000759.1_g000005
rosa_roxburghii Rroxscaffold_5G00374960
rosa_rugosa Rorug04G0268600
rosa_samantha Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana Rw4G028010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 728
AccII CGCG 4 cut(s) 91, 332, 410, 525
AciI CCGC 8 cut(s) 13, 91, 408, 467, 523, 560, 875, 878
AclWI GGATC 2 cut(s) 95, 108
AcsI RAATTY 1 cut(s) 494
AcvI CACGTG 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 729
AfiI CCNNNNNNNGG 3 cut(s) 13, 601, 738
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 3 cut(s) 97, 337, 499
AluBI AGCT 3 cut(s) 440, 637, 646
AluI AGCT 3 cut(s) 440, 637, 646
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 2 cut(s) 95, 108
AlwNI CAGNNNCTG 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 601
AoxI GGCC 3 cut(s) 630, 759, 801
ApeKI GCWGC 4 cut(s) 548, 567, 583, 606
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 2 cut(s) 403, 695
AspLEI GCGC 3 cut(s) 91, 412, 731
AspS9I GGNCC 3 cut(s) 50, 450, 598
AsuC2I CCSGG 3 cut(s) 596, 602, 603
AsuII TTCGAA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 3 cut(s) 50, 450, 598
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BamHI GGATCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 516
BauI CACGAG 2 cut(s) 45, 703
BbrPI CACGTG 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 860
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 4 cut(s) 560, 579, 593, 595
BccI CCATC 2 cut(s) 112, 205
BceAI ACGGC 3 cut(s) 497, 547, 742
BcnI CCSGG 3 cut(s) 596, 602, 603
BcoDI GTCTC 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 684
BisI GCNGC 6 cut(s) 549, 560, 568, 584, 607, 876
BlsI GCNGC 6 cut(s) 550, 561, 569, 585, 608, 877
Bme1390I CCNGG 3 cut(s) 596, 602, 603
Bme18I GGWCC 3 cut(s) 50, 450, 598
BmeT110I CYCGRG 1 cut(s) 601
BmgT120I GGNCC 3 cut(s) 50, 450, 598
BmiI GGNNCC 7 cut(s) 102, 435, 513, 599, 600, 662, 730
BmrFI CCNGG 3 cut(s) 596, 602, 603
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 465, 708, 834
BmuI ACTGGG 1 cut(s) 240
BoxI GACNNNNGTC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 860
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpmI CTGGAG 2 cut(s) 420, 647
Bpu10I CCTNAGC 1 cut(s) 647
Bpu14I TTCGAA 1 cut(s) 397
BpuMI CCSGG 3 cut(s) 596, 602, 603
BsaAI YACGTR 1 cut(s) 822
BsaHI GRCGYC 1 cut(s) 729
BsaJI CCNNGG 4 cut(s) 53, 601, 737, 762
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 601, 738
Bse1I ACTGG 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 53, 601, 737, 762
BseGI GGATG 4 cut(s) 197, 218, 723, 781
BseLI CCNNNNNNNGG 3 cut(s) 13, 601, 738
BseMII CTCAG 4 cut(s) 142, 629, 638, 872
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 148, 283
BseXI GCAGC 4 cut(s) 560, 579, 593, 595
BsgI GTGCAG 2 cut(s) 586, 592
Bsh1236I CGCG 4 cut(s) 91, 332, 410, 525
BshFI GGCC 3 cut(s) 632, 761, 803
BshNI GGYRCC 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 3 cut(s) 587, 595, 602
BslFI GGGAC 4 cut(s) 117, 240, 584, 801
BslI CCNNNNNNNGG 3 cut(s) 13, 601, 738
BsmAI GTCTC 1 cut(s) 507
BsmFI GGGAC 4 cut(s) 117, 240, 584, 801
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 3 cut(s) 632, 761, 803
BsoBI CYCGRG 1 cut(s) 601
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 100, 684, 711
BspACI CCGC 8 cut(s) 13, 91, 408, 467, 523, 560, 875, 878
BspANI GGCC 3 cut(s) 632, 761, 803
BspCNI CTCAG 4 cut(s) 141, 628, 639, 871
BspFNI CGCG 4 cut(s) 91, 332, 410, 525
BspLI GGNNCC 7 cut(s) 102, 435, 513, 599, 600, 662, 730
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 2 cut(s) 95, 108
BspT104I TTCGAA 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 728
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 4 cut(s) 53, 601, 737, 762
BssMI GATC 3 cut(s) 100, 684, 711
BssNI GRCGYC 1 cut(s) 729
BssSI CACGAG 2 cut(s) 45, 703
BssT1I CCWWGG 1 cut(s) 762
Bst2BI CACGAG 2 cut(s) 45, 703
Bst4CI ACNGT 3 cut(s) 86, 463, 792
Bst6I CTCTTC 2 cut(s) 267, 524
BstACI GRCGYC 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 397
BstDEI CTNAG 4 cut(s) 128, 615, 647, 858
BstF5I GGATG 4 cut(s) 197, 218, 723, 781
BstFNI CGCG 4 cut(s) 91, 332, 410, 525
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 3 cut(s) 91, 412, 731
BstKTI GATC 3 cut(s) 103, 687, 714
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 100, 684, 711
BstMWI GCNNNNNNNGC 3 cut(s) 10, 390, 643
BstPAI GACNNNNGTC 1 cut(s) 55
BstSCI CCNGG 3 cut(s) 594, 600, 601
BstUI CGCG 4 cut(s) 91, 332, 410, 525
BstV1I GCAGC 4 cut(s) 560, 579, 593, 595
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 2 cut(s) 100, 684
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 2 cut(s) 100, 684
BsuRI GGCC 3 cut(s) 632, 761, 803
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 4 cut(s) 197, 218, 723, 781
BveI ACCTGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 252
CfoI GCGC 3 cut(s) 91, 412, 731
Cfr13I GGNCC 3 cut(s) 50, 450, 598
Cfr9I CCCGGG 1 cut(s) 601
CseI GACGC 1 cut(s) 340
CviAII CATG 1 cut(s) 211
DdeI CTNAG 4 cut(s) 128, 615, 647, 858
DinI GGCGCC 1 cut(s) 730
DpnI GATC 3 cut(s) 102, 686, 713
DpnII GATC 3 cut(s) 100, 684, 711
Eam1104I CTCTTC 2 cut(s) 267, 524
EarI CTCTTC 2 cut(s) 267, 524
Eco130I CCWWGG 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 3 cut(s) 50, 450, 598
Eco72I CACGTG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 516
EgeI GGCGCC 1 cut(s) 730
EheI GGCGCC 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 1 cut(s) 214
FaiI YATR 5 cut(s) 212, 357, 375, 518, 795
FaqI GGGAC 4 cut(s) 117, 240, 584, 801
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 6
Fnu4HI GCNGC 6 cut(s) 549, 560, 568, 584, 607, 876
FokI GGATG 4 cut(s) 184, 205, 730, 788
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 6 cut(s) 549, 560, 568, 584, 607, 876
GlaI GCGC 3 cut(s) 90, 411, 730
GluI GCNGC 6 cut(s) 549, 560, 568, 584, 607, 876
GsuI CTGGAG 2 cut(s) 420, 647
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 3 cut(s) 632, 761, 803
HapII CCGG 3 cut(s) 587, 595, 602
HgaI GACGC 1 cut(s) 340
HhaI GCGC 3 cut(s) 91, 412, 731
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 3 cut(s) 89, 410, 729
HinP1I GCGC 3 cut(s) 89, 410, 729
HinfI GANTC 5 cut(s) 325, 572, 613, 677, 856
HpaII CCGG 3 cut(s) 587, 595, 602
Hpy166II GTNNAC 3 cut(s) 50, 781, 817
Hpy188I TCNGA 7 cut(s) 27, 61, 450, 457, 511, 665, 682
Hpy188III TCNNGA 4 cut(s) 173, 688, 715, 810
Hpy8I GTNNAC 3 cut(s) 50, 781, 817
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 3 cut(s) 145, 286, 414
HpyCH4III ACNGT 3 cut(s) 86, 463, 792
HpyCH4IV ACGT 2 cut(s) 783, 821
HpyCH4V TGCA 6 cut(s) 4, 384, 478, 567, 609, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 390, 643
HpyF3I CTNAG 4 cut(s) 128, 615, 647, 858
HpySE526I ACGT 2 cut(s) 783, 821
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 3 cut(s) 89, 410, 729
KasI GGCGCC 1 cut(s) 728
KflI GGGWCCC 1 cut(s) 598
Kzo9I GATC 3 cut(s) 100, 684, 711
LmnI GCTCC 4 cut(s) 278, 382, 439, 511
Lsp1109I GCAGC 4 cut(s) 560, 579, 593, 595
LweI GCATC 3 cut(s) 465, 708, 834
MaeII ACGT 2 cut(s) 783, 821
MaeIII GTNAC 1 cut(s) 868
MalI GATC 3 cut(s) 102, 686, 713
MboI GATC 3 cut(s) 100, 684, 711
MboII GAAGA 5 cut(s) 254, 271, 274, 541, 865
MflI RGATCY 2 cut(s) 100, 684
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 4 cut(s) 111, 181, 494, 805
Mly113I GGCGCC 1 cut(s) 729
MlyI GAGTC 4 cut(s) 581, 607, 671, 850
MmeI TCCRAC 1 cut(s) 489
MroXI GAANNNNTTC 2 cut(s) 403, 695
MseI TTAA 3 cut(s) 21, 180, 230
MspI CCGG 3 cut(s) 587, 595, 602
MspR9I CCNGG 3 cut(s) 596, 602, 603
Mva1269I GAATGC 1 cut(s) 393
MvnI CGCG 4 cut(s) 91, 332, 410, 525
MwoI GCNNNNNNNGC 3 cut(s) 10, 390, 643
NarI GGCGCC 1 cut(s) 729
NciI CCSGG 3 cut(s) 596, 602, 603
NdeII GATC 3 cut(s) 100, 684, 711
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 7 cut(s) 102, 435, 513, 599, 600, 662, 730
NmeAIII GCCGAG 4 cut(s) 559, 658, 757, 762
NspV TTCGAA 1 cut(s) 397
PcsI WCGNNNNNNNCGW 2 cut(s) 686, 729
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 2 cut(s) 403, 695
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 6 cut(s) 550, 561, 569, 585, 608, 877
PleI GAGTC 4 cut(s) 580, 607, 671, 850
PluTI GGCGCC 1 cut(s) 732
PmaCI CACGTG 1 cut(s) 822
PmlI CACGTG 1 cut(s) 822
PpsI GAGTC 4 cut(s) 580, 607, 671, 850
Ppu21I YACGTR 1 cut(s) 822
PpuMI RGGWCCY 1 cut(s) 598
PshAI GACNNNNGTC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 598
PspCI CACGTG 1 cut(s) 822
PspN4I GGNNCC 7 cut(s) 102, 435, 513, 599, 600, 662, 730
PspPI GGNCC 3 cut(s) 50, 450, 598
PspPPI RGGWCCY 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 252
PsuI RGATCY 2 cut(s) 100, 684
SaqAI TTAA 3 cut(s) 21, 180, 230
SatI GCNGC 6 cut(s) 549, 560, 568, 584, 607, 876
Sau3AI GATC 3 cut(s) 100, 684, 711
Sau96I GGNCC 3 cut(s) 50, 450, 598
SchI GAGTC 4 cut(s) 581, 607, 671, 850
ScrFI CCNGG 3 cut(s) 596, 602, 603
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 3 cut(s) 465, 708, 834
SfoI GGCGCC 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 397
SinI GGWCC 3 cut(s) 50, 450, 598
SmaI CCCGGG 1 cut(s) 603
Sse9I AATT 4 cut(s) 111, 181, 494, 805
SsiI CCGC 8 cut(s) 13, 91, 408, 467, 523, 560, 875, 878
SspDI GGCGCC 1 cut(s) 728
SspI AATATT 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 594, 600, 601
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 3 cut(s) 86, 463, 792
TaiI ACGT 2 cut(s) 786, 824
TaqI TCGA 3 cut(s) 397, 689, 723
TaqII GACCGA 1 cut(s) 45
TasI AATT 4 cut(s) 111, 181, 494, 805
TauI GCSGC 2 cut(s) 562, 878
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 3 cut(s) 21, 180, 230
Tru9I TTAA 3 cut(s) 21, 180, 230
TseI GCWGC 4 cut(s) 548, 567, 583, 606
TspDTI ATGAA 2 cut(s) 127, 227
TspGWI ACGGA 1 cut(s) 443
TspMI CCCGGG 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 50, 450, 598
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmaI CCCGGG 1 cut(s) 601
XmnI GAANNNNTTC 2 cut(s) 403, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.