Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015092

Physical Location & Seq

Genomic Coordinates Forward (+)

5723095 .. 5723802

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAACTCCACCGCATTTACAACAACACTCCCTCATGTCTCCTCCGCCCGCTCCGCCGCCGCCGAGTCATCGTCAAACCGCCAATTCCACAACCCTGTACCCGCCAAATTGAAACTCGACACCCAAAACAACAAAATAAATTTCTTGTCCATCAAATGCATCCCCAGTCGAGGAATTCGAATCCCGAACGCGTTGGCTCTGACGGCGACGCAGGCTCGGCCGTCGGAGCCCACGGAGAGGGTGGCCGACAAGCTGAAACGCCTCGTTTTGGAATTCAAGTCTCTGTCGGAGCCAATTGACCGCGTGAAGCGGCTACTACACTACGCGGCGAGGCTCCCGCCGCACAGTGAGTGTGCGCGGGAGCCGGAGAACCGGGTCCAGGGGTGCTCGACGCAGGTGTGGGTGGAGGCAGAGATGGACGAGGTGGGGAGGATGAGGTTCCGGGCGGACAGCGACTCGGAGATCGCGAAGGGGTTCTGCTCGTGCCTGATGTGGTTGCTGGACGGCGCGGAGGCGCGTGAGGTTCTGGCGGTGGAGCCGCGGGATTTGGACGACGTGAATGTGGGGGTGTACGGGAAGGTCAATTCAAGAGTGAACACGTGGCACAACGTGCTGCTGGCGATGCAGAGGAAGACTCAGGCTTTGGTGGCGGAGCGAGAGCAGGGGATGCGGGGTGCTAATTCTTTCCTTGACGAGGTCAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0016043 GO:0016226 GO:0019222 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0042762 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044093 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0065007 GO:0065009 GO:0071840 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SufE

Protein Analysis

236

Amino Acids

26.2

Weight (kDa)

8.63

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	91 - 210	3e-28	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67810
fragaria_vesca	FvH4_4g25940 FvH4_4g25940
malus_domestica	MD13G1098500.v1.1 MD16G1099500.v1.1
prunus_persica	Prupe.1G246900_v2.0.a1
pyrus_communis	pycom13g08620
rosa_chinensis	RchiOBHm_Chr4g0433411
rosa_laevigata	RLG00000006755
rosa_multiflora	Rmu_sc0000759.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374960
rosa_rugosa	Rorug04G0268600
rosa_samantha	Rh4BG331200 Rh4CG346500 Rh4DG327500
rosa_wichuraiana	Rw4G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	51
AccII	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
AcoI	YGGCCR	2 cut(s)	218, 243
AcsI	RAATTY	3 cut(s)	139, 174, 272
AcvI	CACGTG	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	610
AfaI	GTAC	2 cut(s)	99, 572
AfiI	CCNNNNNNNGG	5 cut(s)	170, 237, 268, 379, 694
AflIII	ACRYGT	2 cut(s)	189, 597
AgsI	TTSAA	3 cut(s)	112, 277, 588
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	2 cut(s)	43, 285
AoxI	GGCC	2 cut(s)	218, 243
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	3 cut(s)	139, 174, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	3 cut(s)	358, 509, 517
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	2 cut(s)	374, 443
AsuII	TTCGAA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	481
BbrPI	CACGTG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	2 cut(s)	158, 409
BceAI	ACGGC	3 cut(s)	205, 219, 520
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	374, 443
BcoDI	GTCTC	2 cut(s)	43, 285
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	7 cut(s)	57, 60, 311, 327, 341, 539, 614
BlsI	GCNGC	7 cut(s)	58, 61, 312, 328, 342, 540, 615
Bme1390I	CCNGG	3 cut(s)	374, 380, 443
Bme18I	GGWCC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	7 cut(s)	228, 291, 335, 363, 377, 440, 537
BmrFI	CCNGG	3 cut(s)	374, 380, 443
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	168, 612, 657
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	638
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	2 cut(s)	374, 443
BsaAI	YACGTR	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	231, 379, 539
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 237, 268, 379, 694
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	231, 379, 539
BseGI	GGATG	3 cut(s)	159, 438, 672
BseLI	CCNNNNNNNGG	5 cut(s)	170, 237, 268, 379, 694
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	600
Bsh1236I	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	220, 245
BsiEI	CGRYCG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	365, 373, 442
BslI	CCNNNNNNNGG	5 cut(s)	170, 237, 268, 379, 694
BsmAI	GTCTC	2 cut(s)	43, 285
BsnI	GGCC	2 cut(s)	220, 245
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	231, 389
Bsp143I	GATC	1 cut(s)	462
Bsp68I	TCGCGA	1 cut(s)	467
BspANI	GGCC	2 cut(s)	220, 245
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
BspLI	GGNNCC	7 cut(s)	228, 291, 335, 363, 377, 440, 537
BspMI	ACCTGC	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	231, 379, 539
BssMI	GATC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	610, 667
BstBAI	YACGTR	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	49, 213, 618
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	2 cut(s)	231, 539
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	159, 438, 672
BstFNI	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
BstHHI	GCGC	3 cut(s)	358, 509, 517
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	2 cut(s)	43, 285
BstMBI	GATC	1 cut(s)	462
BstMCI	CGRYCG	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	372, 378, 441
BstUI	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
BstV1I	GCAGC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	638
BstZI	CGGCCG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	220, 245
BtgI	CCRYGG	2 cut(s)	231, 539
BtgZI	GCGATG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	159, 438, 672
BtsIMutI	CAGTG	1 cut(s)	352
BtuMI	TCGCGA	1 cut(s)	467
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	49, 213, 618
CfoI	GCGC	3 cut(s)	358, 509, 517
Cfr13I	GGNCC	1 cut(s)	376
Cfr42I	CCGCGG	1 cut(s)	542
CseI	GACGC	2 cut(s)	217, 400
Csp6I	GTAC	2 cut(s)	98, 571
CviAII	CATG	1 cut(s)	35
CviQI	GTAC	2 cut(s)	98, 571
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
DraIII	CACNNNGTG	1 cut(s)	610
EaeI	YGGCCR	2 cut(s)	218, 243
EagI	CGGCCG	1 cut(s)	218
EciI	GGCGGA	4 cut(s)	34, 43, 461, 665
EclXI	CGGCCG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	218
Eco72I	CACGTG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoRI	GAATTC	2 cut(s)	174, 272
EcoRII	CCWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	38
FaiI	YATR	1 cut(s)	36
FatI	CATG	1 cut(s)	34
FauI	CCCGC	6 cut(s)	56, 109, 345, 351, 534, 663
Fnu4HI	GCNGC	7 cut(s)	57, 60, 311, 327, 341, 539, 614
FokI	GGATG	3 cut(s)	146, 445, 679
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	7 cut(s)	57, 60, 311, 327, 341, 539, 614
GlaI	GCGC	3 cut(s)	357, 508, 516
GluI	GCNGC	7 cut(s)	57, 60, 311, 327, 341, 539, 614
HaeIII	GGCC	2 cut(s)	220, 245
HapII	CCGG	3 cut(s)	365, 373, 442
HgaI	GACGC	2 cut(s)	217, 400
HhaI	GCGC	3 cut(s)	358, 509, 517
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	3 cut(s)	356, 507, 515
HinP1I	GCGC	3 cut(s)	356, 507, 515
HinfI	GANTC	4 cut(s)	65, 180, 455, 634
HpaII	CCGG	3 cut(s)	365, 373, 442
Hpy166II	GTNNAC	2 cut(s)	571, 595
Hpy188I	TCNGA	4 cut(s)	201, 226, 289, 460
Hpy188III	TCNNGA	3 cut(s)	184, 466, 588
Hpy8I	GTNNAC	2 cut(s)	571, 595
Hpy99I	CGWCG	4 cut(s)	211, 226, 394, 557
HpyAV	CCTTC	2 cut(s)	463, 571
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	3 cut(s)	555, 599, 609
HpyCH4V	TGCA	2 cut(s)	159, 625
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	3 cut(s)	555, 599, 609
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	3 cut(s)	356, 507, 515
KspI	CCGCGG	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	462
LmnI	GCTCC	7 cut(s)	56, 226, 289, 339, 361, 535, 652
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	3 cut(s)	168, 612, 657
MaeII	ACGT	3 cut(s)	555, 599, 609
MalI	GATC	1 cut(s)	464
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	462
MboII	GAAGA	1 cut(s)	643
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	231, 389
MluCI	AATT	8 cut(s)	83, 107, 139, 174, 272, 294, 583, 679
MluI	ACGCGT	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	74, 449, 628
MmeI	TCCRAC	2 cut(s)	204, 267
Mph1103I	ATGCAT	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	3 cut(s)	365, 373, 442
MspR9I	CCNGG	3 cut(s)	374, 380, 443
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	8 cut(s)	191, 303, 326, 358, 467, 509, 517, 541
NciI	CCSGG	2 cut(s)	374, 443
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	7 cut(s)	228, 291, 335, 363, 377, 440, 537
NmeAIII	GCCGAG	2 cut(s)	88, 196
NruI	TCGCGA	1 cut(s)	467
NsiI	ATGCAT	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	2 cut(s)	175, 464
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	695
PkrI	GCNGC	7 cut(s)	58, 61, 312, 328, 342, 540, 615
PleI	GAGTC	3 cut(s)	73, 449, 628
PmaCI	CACGTG	1 cut(s)	600
PmlI	CACGTG	1 cut(s)	600
PpsI	GAGTC	3 cut(s)	73, 449, 628
Ppu21I	YACGTR	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	7 cut(s)	228, 291, 335, 363, 377, 440, 537
PspPI	GGNCC	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	695
RruI	TCGCGA	1 cut(s)	467
RsaI	GTAC	2 cut(s)	99, 572
RsaNI	GTAC	2 cut(s)	98, 571
SacII	CCGCGG	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	706
SatI	GCNGC	7 cut(s)	57, 60, 311, 327, 341, 539, 614
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	3 cut(s)	74, 449, 628
ScrFI	CCNGG	3 cut(s)	374, 380, 443
SduI	GDGCHC	2 cut(s)	231, 389
SfaNI	GCATC	3 cut(s)	168, 612, 657
Sfr303I	CCGCGG	1 cut(s)	542
SfuI	TTCGAA	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	8 cut(s)	83, 107, 139, 174, 272, 294, 583, 679
StyD4I	CCNGG	3 cut(s)	372, 378, 441
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	3 cut(s)	558, 602, 612
TaqI	TCGA	4 cut(s)	117, 169, 178, 389
TasI	AATT	8 cut(s)	83, 107, 139, 174, 272, 294, 583, 679
TauI	GCSGC	6 cut(s)	59, 62, 313, 329, 343, 541
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	613
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	352
Tth111I	GACNNNGTC	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	3 cut(s)	139, 174, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.