AT1G68185

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014096
Physical Location & Seq
Forward (+)
25556383 .. 25558533
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68185.2

Sequence Viewer

Length: 648 bp
ATGGGAGGTGAAGGAGAAGATCTAGAGCCACTTTTTGATTATCGTCGTGTTCAGCCAGCGAATTTCGTTTGTATCGATGATGATGATGATGATGCCTCGGTGACGCCAATTCCGAAGAAAGCGAAAACTTCACAAACAGTTGAGAAGTTAGATGATGATGTGAAAGTGATTGAAGTTACGGGTGATGACGATTGGTTGCTTCCTCCACCAAAGGTTATCTTCGACAAAAGTAAAGACTCTGTTGAAGATTCAACTATTAAAGCATTGAGGTCGAAGAAGATGGAGCTCATGTCATTTACAAAAACTGTAGGAGATGTGATGCAGGAAGTTGAGGAGTCTGCTAAAAGGGAAGTTGAAGAATCTCGCAATCCATCTTCAGAGACTGCTGCTCAGTTACCATCAGAGCCTACGAATGACAGGGCCAAGATTGTTATTACAATACAGGACAAAGATGGACAGAAGACACTCCGGGTGTTTGCGGACGAGAAATTTGAGAGGGTTATCAAACTGTATACAGATAAAGCTAAGCTTGACCCGCAAAATCTTGTATTTATTTTTGACGGTGATAAGATTGATCCATCAACCACTCCTTCTGAACTTGGCATGGAGGATCATGATATGATTGAAGTGCACACCAAAAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

215

Amino Acids

24.22

Weight (kDa)

4.54

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 189 - 256 9.4e-14 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 192 - 260 1e-05 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 512
AciI CCGC 2 cut(s) 479, 536
AclWI GGATC 2 cut(s) 569, 618
AcsI RAATTY 2 cut(s) 61, 488
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 104
AgsI TTSAA 5 cut(s) 173, 245, 252, 356, 626
AluBI AGCT 3 cut(s) 286, 524, 529
AluI AGCT 3 cut(s) 286, 524, 529
Alw21I GWGCWC 2 cut(s) 288, 633
Alw26I GTCTC 1 cut(s) 374
Alw44I GTGCAC 1 cut(s) 629
AlwI GGATC 2 cut(s) 569, 618
AlwNI CAGNNNCTG 1 cut(s) 383
AoxI GGCC 1 cut(s) 420
ApaLI GTGCAC 1 cut(s) 629
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 2 cut(s) 61, 488
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspS9I GGNCC 1 cut(s) 420
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 4 cut(s) 20, 112, 194, 575
BaeGI GKGCMC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 288, 633
BbvI GCAGC 1 cut(s) 373
BccI CCATC 5 cut(s) 274, 379, 406, 446, 586
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 306
BglII AGATCT 1 cut(s) 19
BisI GCNGC 1 cut(s) 387
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 82, 309
BpiI GAAGAC 1 cut(s) 467
Bpu1102I GCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 470
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 1 cut(s) 373
BshFI GGCC 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 288, 633
BsiSI CCGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 374
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 288, 633
Bsp143I GATC 3 cut(s) 19, 574, 610
Bsp1720I GCTNAGC 1 cut(s) 525
BspACI CCGC 2 cut(s) 479, 536
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 403
BspDI ATCGAT 1 cut(s) 75
BspHI TCATGA 1 cut(s) 613
BspPI GGATC 2 cut(s) 569, 618
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 19, 574, 610
BssNAI GTATAC 1 cut(s) 513
BssNI GRCGYC 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 513
Bst4CI ACNGT 4 cut(s) 139, 307, 510, 563
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 390, 525
BstKTI GATC 3 cut(s) 22, 577, 613
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 19, 574, 610
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 422
BsuTUI ATCGAT 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 383
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 1 cut(s) 420
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 112
CviAII CATG 3 cut(s) 289, 604, 614
CviJI RGCY 7 cut(s) 28, 55, 286, 406, 422, 524, 529
CviKI_1 RGCY 7 cut(s) 28, 55, 286, 406, 422, 524, 529
DdeI CTNAG 2 cut(s) 390, 525
DpnI GATC 3 cut(s) 21, 576, 612
DpnII GATC 3 cut(s) 19, 574, 610
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 3 cut(s) 292, 607, 617
FaiI YATR 5 cut(s) 290, 513, 605, 615, 620
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 513, 545
FatI CATG 3 cut(s) 288, 603, 613
FauI CCCGC 1 cut(s) 543
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 23
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 422
HapII CCGG 1 cut(s) 469
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 292, 607, 617
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 4 cut(s) 236, 248, 335, 359
HpaII CCGG 1 cut(s) 469
HphI GGTGA 4 cut(s) 20, 112, 194, 575
Hpy166II GTNNAC 2 cut(s) 513, 631
Hpy188I TCNGA 4 cut(s) 114, 379, 403, 595
Hpy188III TCNNGA 2 cut(s) 23, 614
Hpy8I GTNNAC 2 cut(s) 513, 631
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 5, 600
HpyCH4III ACNGT 4 cut(s) 139, 307, 510, 563
HpyCH4V TGCA 2 cut(s) 322, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 2 cut(s) 390, 525
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 292, 607, 617
Kzo9I GATC 3 cut(s) 19, 574, 610
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 69, 308, 403, 428, 482
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 2 cut(s) 82, 309
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 3 cut(s) 100, 175, 393
MalI GATC 3 cut(s) 21, 576, 612
MboI GATC 3 cut(s) 19, 574, 610
MboII GAAGA 9 cut(s) 29, 127, 211, 257, 286, 289, 366, 368, 472
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 288, 633
MluCI AATT 3 cut(s) 61, 108, 488
MlyI GAGTC 2 cut(s) 230, 344
MnlI CCTC 6 cut(s) 106, 213, 261, 325, 489, 601
MseI TTAA 1 cut(s) 258
MspI CCGG 1 cut(s) 469
MspR9I CCNGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 1 cut(s) 470
NdeII GATC 3 cut(s) 19, 574, 610
NlaIII CATG 3 cut(s) 292, 607, 617
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 1 cut(s) 613
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 110
PfeI GAWTC 2 cut(s) 248, 359
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 2 cut(s) 230, 343
PpsI GAGTC 2 cut(s) 230, 343
Psp124BI GAGCTC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 19
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 19, 574, 610
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 2 cut(s) 230, 344
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 288, 633
SetI ASST 6 cut(s) 10, 216, 272, 288, 526, 531
SfaNI GCATC 2 cut(s) 82, 309
SfcI CTRYAG 1 cut(s) 306
Sse9I AATT 3 cut(s) 61, 108, 488
SsiI CCGC 2 cut(s) 479, 536
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 4 cut(s) 139, 307, 510, 563
TaqI TCGA 3 cut(s) 75, 222, 272
TasI AATT 3 cut(s) 61, 108, 488
TfiI GAWTC 2 cut(s) 248, 359
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 100
VneI GTGCAC 1 cut(s) 629
XapI RAATTY 2 cut(s) 61, 488
XbaI TCTAGA 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.