Rh4BG337700

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014096
Physical Location & Seq
Reverse (-)
50073864 .. 50076656
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG337700.1

Sequence Viewer

Length: 681 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAAAGGTTGATGACAGTGTGAAGGTTACAGTTATTGAGGATGACGACGAGGACTGGTTGCTTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAGCTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACGAGAACTTCTTAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCACCACCTCCAAAGCCCCAAGTTGAAAGAAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAATGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

226

Amino Acids

25.27

Weight (kDa)

4.57

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 143 - 210 1.3e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 600
AciI CCGC 3 cut(s) 46, 221, 496
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 328, 607
AgsI TTSAA 6 cut(s) 155, 416, 443, 505, 642, 663
AhdI GACNNNNNGTC 1 cut(s) 100
AluBI AGCT 4 cut(s) 289, 299, 326, 524
AluI AGCT 4 cut(s) 289, 299, 326, 524
Alw26I GTCTC 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 600
ApeKI GCWGC 2 cut(s) 52, 389
AspS9I GGNCC 2 cut(s) 319, 575
AsuHPI GGTGA 2 cut(s) 257, 366
AsuII TTCGAA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 319, 575
BbvI GCAGC 2 cut(s) 64, 401
BccI CCATC 4 cut(s) 263, 446, 554, 598
BceAI ACGGC 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 337
BisI GCNGC 4 cut(s) 46, 53, 390, 497
BlsI GCNGC 4 cut(s) 47, 54, 391, 498
Bme18I GGWCC 2 cut(s) 319, 575
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 319, 575
BmsI GCATC 3 cut(s) 302, 370, 571
Bpu14I TTCGAA 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 607
Bse1I ACTGG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 600
BseGI GGATG 5 cut(s) 199, 457, 487, 609, 616
BseLI CCNNNNNNNGG 2 cut(s) 328, 607
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 2 cut(s) 102, 347
BseXI GCAGC 2 cut(s) 64, 401
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 328, 607
BsmAI GTCTC 1 cut(s) 337
BsmBI CGTCTC 1 cut(s) 337
Bsp119I TTCGAA 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 600
Bsp143I GATC 1 cut(s) 621
BspACI CCGC 3 cut(s) 46, 221, 496
BspCNI CTCAG 1 cut(s) 292
BspEI TCCGGA 1 cut(s) 600
BspFNI CGCG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 496
BsrI ACTGG 1 cut(s) 212
BssMI GATC 1 cut(s) 621
BssNI GRCGYC 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 170, 184
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 50, 291
BstDEI CTNAG 3 cut(s) 300, 356, 525
BstF5I GGATG 5 cut(s) 199, 457, 487, 609, 616
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 1 cut(s) 624
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 1 cut(s) 621
BstMWI GCNNNNNNNGC 4 cut(s) 220, 305, 389, 521
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 64, 401
BstXI CCANNNNNNTGG 1 cut(s) 241
BtsCI GGATG 5 cut(s) 199, 457, 487, 609, 616
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 50, 291
Cfr13I GGNCC 2 cut(s) 319, 575
CseI GACGC 1 cut(s) 90
CviAII CATG 3 cut(s) 478, 619, 632
DdeI CTNAG 3 cut(s) 300, 356, 525
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
DriI GACNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 319, 575
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 481, 622, 635
FaiI YATR 7 cut(s) 434, 473, 475, 479, 513, 620, 633
FatI CATG 3 cut(s) 477, 618, 631
Fnu4HI GCNGC 4 cut(s) 46, 53, 390, 497
FokI GGATG 5 cut(s) 206, 464, 494, 616, 623
Fsp4HI GCNGC 4 cut(s) 46, 53, 390, 497
GluI GCNGC 4 cut(s) 46, 53, 390, 497
HapII CCGG 1 cut(s) 601
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 3 cut(s) 481, 622, 635
HinfI GANTC 6 cut(s) 142, 251, 302, 335, 456, 593
HpaII CCGG 1 cut(s) 601
HphI GGTGA 2 cut(s) 257, 366
Hpy188I TCNGA 3 cut(s) 117, 323, 540
Hpy188III TCNNGA 3 cut(s) 443, 578, 601
Hpy99I CGWCG 9 cut(s) 80, 83, 86, 89, 92, 95, 98, 106, 203
HpyAV CCTTC 2 cut(s) 127, 169
HpyCH4III ACNGT 2 cut(s) 170, 184
HpyCH4V TGCA 4 cut(s) 52, 515, 631, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 305, 389, 521
HpyF3I CTNAG 3 cut(s) 300, 356, 525
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 3 cut(s) 481, 622, 635
Kpn2I TCCGGA 1 cut(s) 600
Kzo9I GATC 1 cut(s) 621
LpnPI CCDG 7 cut(s) 159, 193, 275, 390, 591, 603, 614
Lsp1109I GCAGC 2 cut(s) 64, 401
LweI GCATC 3 cut(s) 302, 370, 571
MaeIII GTNAC 3 cut(s) 178, 229, 273
MalI GATC 1 cut(s) 623
MbiI CCGCTC 1 cut(s) 496
MboI GATC 1 cut(s) 621
MboII GAAGA 5 cut(s) 29, 136, 142, 363, 651
MluCI AATT 2 cut(s) 239, 464
MlyI GAGTC 3 cut(s) 311, 344, 465
MroI TCCGGA 1 cut(s) 600
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 601
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 220, 305, 389, 521
NdeII GATC 1 cut(s) 621
NlaIII CATG 3 cut(s) 481, 622, 635
NspV TTCGAA 1 cut(s) 140
PcsI WCGNNNNNNNCGW 5 cut(s) 81, 84, 87, 90, 93
PfeI GAWTC 3 cut(s) 142, 251, 593
PkrI GCNGC 4 cut(s) 47, 54, 391, 498
PleI GAGTC 3 cut(s) 310, 343, 464
PpsI GAGTC 3 cut(s) 310, 343, 464
PspPI GGNCC 2 cut(s) 319, 575
PvuII CAGCTG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 4 cut(s) 46, 53, 390, 497
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 2 cut(s) 319, 575
SchI GAGTC 3 cut(s) 311, 344, 465
SfaNI GCATC 3 cut(s) 302, 370, 571
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 2 cut(s) 319, 575
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 2 cut(s) 239, 464
SsiI CCGC 3 cut(s) 46, 221, 496
TaaI ACNGT 2 cut(s) 170, 184
TaqI TCGA 6 cut(s) 24, 36, 75, 140, 624, 676
TasI AATT 2 cut(s) 239, 464
TauI GCSGC 2 cut(s) 48, 499
TfiI GAWTC 3 cut(s) 142, 251, 593
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 175
TseI GCWGC 2 cut(s) 52, 389
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 319, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.