Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Forward (+)

44793358 .. 44797548

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGAATCTCAACAACGGTAGGGGATCTATGTCAACGGCCAGCTCCAGTGGAGCTTGGAAATCGGGAGATGTGGTACCTGACCAGTTTCCTGCGGGTTTAAGAGTCCTGGTTGTTGACGACGATCCTACTTGTCTTATGATCTTGGAGAAGATGCTGCGTACTTGTCTCTACGAAGTTACGAAATGCAATCGAGCTGAGATCGCACTGTCCCTGCTTCGAGAGAACAAAAATGGATATGATGTAGTTATTAGTGATGTCCACATGCCTGACATGGATGGATTCAAGCTCCTCGAGCAAATTGGACTAGAGATGGACCTGCCGGTTATCATGATGTCTGCTGATGATGGGAAAAGTGTTGTTATGAAGGGTGTCACTCATGGTGCTTGTGATTATCTAATCAAACCGGTCCGGATTGAGGCGCTAAAGAACATATGGCAGCATGTAGTTCGAAAGAAGAAGAATGAGTGGAAGGATGTGGAGCAATCTGGAAGTGTGGACGAAGGAGATCGGCAACAAAAACCATGTGAAGAACCAGATTACTCATCTTCAGCAAATGAAGGGACTTGGAAGAACTCAAAGAAGAGGAAAGATGAGGACGATGATGCGGATGATAGGGATGATACATCCACGTTAAAGAAGCCTAGGGTGGTTTGGTCGGTTGAGCTCCATCAACAATTTGTCGGTGCTGTCAATCAATTAGGCATTGATAAGGCGGTTCCTAAGAAAATTTTGGAGTTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCATCTACAGAAATATCGGTTGTACCTTAGAAGGTTGAGTGGGGTATCGCAGCACCAGAGTAATTTGAGCAACTCTTTCATAAGTTCTCAAGACGCATCTTTTGGAGCCATGTCGTCGCTCAATGGGATTGATCTTCAGACTCTAGCCGCCACTGGTCAACTACCTGCTCAAAGCCTTGCCACACTTCAAGCAGCCGGGCTCGGTAGGTCAGCAGCAAAATCTGGCATACCAATGCCCCTTGTTGATCAAAGGAACTTGTTCAGCTTTGAAAATCCAAAGTTGAGGTTTGCAGAGGGGCAGCAACATCATAGCAGTGGTAAACCAATGAACTTACTTCACGGCATTCCAACGACTATGGAGGCAAAGCAGCTTGCCAACTTGCACCAGTCTGCACAATCCCTTGGGGCTGTGAATATGCAAGTCAATGCCCATGGAGTCCAAAACAACTCTCTATATATGATAGGTCAACCACAGTCAAGAGGGCAGATCCTGAATGAAAGTTCTGGGACTCATGTTCCTAGGCTTCCATCATCAATTGGGCAGCCTATGGTATCAAACGGTATTCCTAGTGGAGTTATAGGAAGAAATGGGATTTCTGATGTTGGGAGAGGGACAGGATATAATCCAGTTCCGCAGAACTCTTCAATGTTGAATTTTCCCTTGAACAACACTCCAGAACTGCCAGGCAATAGTTACACTCTTGGCAGTACACAAGGGATGTCCAGCCTCACGCCTAAAGGGTCATTTCCAGAAGAGGTTAACTCTGAAATAAAAAGATCTGGGGGATTTGTTCCAAGTTATGATATTTTTAATGAGTTACATCAGCACAAGTCCAACGATTGGAATTTACAGAATGTAGGCTTGACTTTTGATGCCTCTCACCATGCAAACTCCATCCATGGTAGCCTTGACTCCTCAGGTTTAGTTCATCAAGGTTTTTCTTCTAACCAAAGGAGTGCACAAAGCCGGAATCCATCTAATGTTGGGAAAGCTATGTTCCCAATGGGGGCGGCAAGCACTGATCATGGGCATGCGCAAAATAGTGGTCAACACCTTAGCAACGGTCTTATTGTTGACAATCCAGTTCGGATTAAATCTGAAAGGCATTCTGATGCATCTCAAAATAACTTCTTTCATGATCAATATGGTCAGGAGGATCTAATGAGTGCACTTCTCAAACAGCAGCAAGGGGGAGTTGGACCATCTGAAAATGAGTTTGACTTTGATGGGTATTCCTTGGATAATATTCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

677

Amino Acids

73.76

Weight (kDa)

6.09

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	35 - 143	1.5e-23	Response regulator receiver domain
Myb_DNA-binding	PF00249	215 - 265	7.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1812
Acc36I	ACCTGC	2 cut(s)	324, 949
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	1617
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	6 cut(s)	92, 605, 713, 924, 1409, 1787
AclWI	GGATC	4 cut(s)	31, 116, 1258, 1941
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	726, 1429, 1621
AcuI	CTGAAG	2 cut(s)	531, 896
AfaI	GTAC	4 cut(s)	75, 160, 800, 1486
AfiI	CCNNNNNNNGG	3 cut(s)	415, 1617, 1783
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	6 cut(s)	283, 965, 1046, 1422, 1429, 1441
AjnI	CCWGG	3 cut(s)	105, 748, 1459
AluBI	AGCT	8 cut(s)	42, 53, 194, 286, 664, 1041, 1147, 1769
AluI	AGCT	8 cut(s)	42, 53, 194, 286, 664, 1041, 1147, 1769
Alw21I	GWGCWC	3 cut(s)	666, 1738, 1948
Alw26I	GTCTC	1 cut(s)	170
Alw44I	GTGCAC	2 cut(s)	1734, 1944
AlwI	GGATC	4 cut(s)	31, 116, 1258, 1941
AlwNI	CAGNNNCTG	1 cut(s)	1267
Ama87I	CYCGRG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	1 cut(s)	36
ApaLI	GTGCAC	2 cut(s)	1734, 1944
ApeKI	GCWGC	9 cut(s)	154, 436, 826, 968, 989, 1075, 1144, 1318, 1960
ApoI	RAATTY	3 cut(s)	726, 1429, 1621
ArsI	GACNNNNNNTTYG	4 cut(s)	860, 892, 1807, 1839
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	1034
Asp718I	GGTACC	1 cut(s)	73
AspA2I	CCTAGG	2 cut(s)	641, 1295
AspLEI	GCGC	2 cut(s)	421, 1813
AspS9I	GGNCC	3 cut(s)	313, 406, 1976
AsuC2I	CCSGG	1 cut(s)	973
AsuHPI	GGTGA	1 cut(s)	1649
AsuII	TTCGAA	1 cut(s)	448
AsuNHI	GCTAGC	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	313, 406, 1976
AvrII	CCTAGG	2 cut(s)	641, 1295
AxyI	CCTNAGG	1 cut(s)	1693
BaeGI	GKGCMC	2 cut(s)	1738, 1948
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	3 cut(s)	666, 756, 978
Bbv12I	GWGCWC	3 cut(s)	666, 1738, 1948
BbvI	GCAGC	9 cut(s)	141, 448, 838, 980, 1001, 1087, 1156, 1330, 1972
BceAI	ACGGC	2 cut(s)	51, 1132
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	3 cut(s)	107, 750, 1461
BclI	TGATCA	3 cut(s)	1021, 1798, 1915
BcnI	CCSGG	1 cut(s)	973
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	7 cut(s)	305, 642, 759, 774, 920, 1296, 1344
BfmI	CTRYAG	1 cut(s)	782
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	2 cut(s)	324, 949
BglII	AGATCT	1 cut(s)	1553
BlnI	CCTAGG	2 cut(s)	641, 1295
Bme1390I	CCNGG	4 cut(s)	107, 750, 973, 1461
Bme18I	GGWCC	3 cut(s)	313, 406, 1976
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	3 cut(s)	313, 406, 1976
BmiI	GGNNCC	3 cut(s)	75, 717, 883
BmrFI	CCNGG	4 cut(s)	107, 750, 973, 1461
BmsI	GCATC	6 cut(s)	141, 592, 881, 1639, 1879, 1901
BmtI	GCTAGC	1 cut(s)	777
BplI	GAGNNNNNCTC	2 cut(s)	1523, 1555
BpmI	CTGGAG	2 cut(s)	28, 1434
Bpu10I	CCTNAGC	1 cut(s)	1832
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	849
BpuMI	CCSGG	1 cut(s)	973
BsaJI	CCNNGG	7 cut(s)	641, 749, 1177, 1207, 1295, 1675, 2013
BsaWI	WCCGGW	2 cut(s)	403, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 1617, 1783
Bse118I	RCCGGY	2 cut(s)	319, 403
Bse1I	ACTGG	6 cut(s)	45, 82, 934, 1162, 1403, 1859
Bse21I	CCTNAGG	1 cut(s)	1693
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	107, 750, 1461
BseDI	CCNNGG	7 cut(s)	641, 749, 1177, 1207, 1295, 1675, 2013
BseGI	GGATG	7 cut(s)	280, 478, 613, 622, 623, 1500, 1671
BseLI	CCNNNNNNNGG	3 cut(s)	415, 1617, 1783
BseMII	CTCAG	2 cut(s)	186, 1707
BseNI	ACTGG	6 cut(s)	45, 82, 934, 1162, 1403, 1859
BseRI	GAGGAG	2 cut(s)	278, 1681
BseSI	GKGCMC	2 cut(s)	1738, 1948
BseXI	GCAGC	9 cut(s)	141, 448, 838, 980, 1001, 1087, 1156, 1330, 1972
BsgI	GTGCAG	1 cut(s)	1152
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	403
BsiHKAI	GWGCWC	3 cut(s)	666, 1738, 1948
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	320, 404, 409, 972, 1744
BslFI	GGGAC	4 cut(s)	193, 574, 1297, 1402
BslI	CCNNNNNNNGG	3 cut(s)	415, 1617, 1783
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	4 cut(s)	193, 574, 1297, 1402
BsmI	GAATGC	2 cut(s)	1119, 1882
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	5 cut(s)	666, 756, 978, 1738, 1948
Bsp13I	TCCGGA	1 cut(s)	408
Bsp19I	CCATGG	2 cut(s)	1207, 1675
BspACI	CCGC	6 cut(s)	92, 605, 713, 924, 1409, 1787
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	187, 1706
BspEI	TCCGGA	1 cut(s)	408
BspHI	TCATGA	2 cut(s)	327, 1912
BspLI	GGNNCC	3 cut(s)	75, 717, 883
BspMI	ACCTGC	2 cut(s)	324, 949
BspOI	GCTAGC	1 cut(s)	777
BspPI	GGATC	4 cut(s)	31, 116, 1258, 1941
BspT104I	TTCGAA	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	73
BsrFI	RCCGGY	2 cut(s)	319, 403
BsrI	ACTGG	6 cut(s)	45, 82, 934, 1162, 1403, 1859
BssAI	RCCGGY	2 cut(s)	319, 403
BssECI	CCNNGG	7 cut(s)	641, 749, 1177, 1207, 1295, 1675, 2013
BssT1I	CCWWGG	6 cut(s)	641, 1177, 1207, 1295, 1675, 2013
Bst2UI	CCWGG	3 cut(s)	107, 750, 1461
Bst4CI	ACNGT	5 cut(s)	17, 207, 1251, 1337, 1841
Bst6I	CTCTTC	3 cut(s)	575, 1423, 1524
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	5 cut(s)	40, 775, 1149, 1792, 1809
BstDEI	CTNAG	5 cut(s)	195, 720, 803, 1693, 1832
BstDSI	CCRYGG	2 cut(s)	1207, 1675
BstF5I	GGATG	7 cut(s)	280, 478, 613, 622, 623, 1500, 1671
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	421, 1813
BstMAI	GTCTC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 292
BstNI	CCWGG	3 cut(s)	107, 750, 1461
BstNSI	RCATGY	3 cut(s)	265, 443, 1811
BstSCI	CCNGG	4 cut(s)	105, 748, 971, 1459
BstSFI	CTRYAG	1 cut(s)	782
BstSLI	GKGCMC	2 cut(s)	1738, 1948
BstV1I	GCAGC	9 cut(s)	141, 448, 838, 980, 1001, 1087, 1156, 1330, 1972
BstX2I	RGATCY	4 cut(s)	23, 1263, 1553, 1933
BstYI	RGATCY	4 cut(s)	23, 1263, 1553, 1933
Bsu36I	CCTNAGG	1 cut(s)	1693
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	2 cut(s)	1207, 1675
BtsCI	GGATG	7 cut(s)	280, 478, 613, 622, 623, 1500, 1671
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	5 cut(s)	52, 203, 927, 1096, 1794
BveI	ACCTGC	2 cut(s)	324, 949
Cac8I	GCNNGC	5 cut(s)	40, 775, 1149, 1792, 1809
CaiI	CAGNNNCTG	1 cut(s)	1267
CciI	TCATGA	2 cut(s)	327, 1912
CfoI	GCGC	2 cut(s)	421, 1813
Cfr10I	RCCGGY	2 cut(s)	319, 403
Cfr13I	GGNCC	3 cut(s)	313, 406, 1976
CpoI	CGGWCCG	1 cut(s)	406
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	4 cut(s)	74, 159, 799, 1485
CspAI	ACCGGT	1 cut(s)	403
CspI	CGGWCCG	1 cut(s)	406
CviQI	GTAC	4 cut(s)	74, 159, 799, 1485
DdeI	CTNAG	5 cut(s)	195, 720, 803, 1693, 1832
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	3 cut(s)	575, 1423, 1524
EarI	CTCTTC	3 cut(s)	575, 1423, 1524
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	6 cut(s)	641, 1177, 1207, 1295, 1675, 2013
Eco24I	GRGCYC	3 cut(s)	666, 756, 978
Eco47I	GGWCC	3 cut(s)	313, 406, 1976
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	531, 896
Eco81I	CCTNAGG	1 cut(s)	1693
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	664
EcoRII	CCWGG	3 cut(s)	105, 748, 1459
EcoT14I	CCWWGG	6 cut(s)	641, 1177, 1207, 1295, 1675, 2013
EcoT22I	ATGCAT	1 cut(s)	1894
EcoT38I	GRGCYC	3 cut(s)	666, 756, 978
ErhI	CCWWGG	6 cut(s)	641, 1177, 1207, 1295, 1675, 2013
FaqI	GGGAC	4 cut(s)	193, 574, 1297, 1402
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	431
FbaI	TGATCA	3 cut(s)	1021, 1798, 1915
FokI	GGATG	7 cut(s)	287, 485, 610, 620, 629, 1507, 1658
FriOI	GRGCYC	3 cut(s)	666, 756, 978
FspBI	CTAG	7 cut(s)	305, 642, 759, 774, 920, 1296, 1344
FspI	TGCGCA	1 cut(s)	1812
GlaI	GCGC	2 cut(s)	420, 1812
GsuI	CTGGAG	2 cut(s)	28, 1434
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	5 cut(s)	320, 404, 409, 972, 1744
HgaI	GACGC	1 cut(s)	878
HhaI	GCGC	2 cut(s)	421, 1813
Hin6I	GCGC	2 cut(s)	419, 1811
HinP1I	GCGC	2 cut(s)	419, 1811
HincII	GTYRAC	7 cut(s)	33, 115, 935, 1244, 1537, 1826, 1852
HindII	GTYRAC	7 cut(s)	33, 115, 935, 1244, 1537, 1826, 1852
HinfI	GANTC	8 cut(s)	4, 102, 279, 916, 1212, 1285, 1688, 1747
HpaI	GTTAAC	1 cut(s)	1537
HpaII	CCGG	5 cut(s)	320, 404, 409, 972, 1744
HphI	GGTGA	1 cut(s)	1649
Hpy188I	TCNGA	7 cut(s)	915, 1375, 1543, 1866, 1876, 1888, 1984
Hpy99I	CGWCG	2 cut(s)	122, 895
HpyAV	CCTTC	5 cut(s)	358, 463, 494, 551, 801
HpyCH4III	ACNGT	5 cut(s)	17, 207, 1251, 1337, 1841
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	9 cut(s)	186, 1067, 1159, 1169, 1195, 1664, 1736, 1892, 1946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 292
HpyF3I	CTNAG	5 cut(s)	195, 720, 803, 1693, 1832
HpySE526I	ACGT	1 cut(s)	629
HspAI	GCGC	2 cut(s)	419, 1811
Kpn2I	TCCGGA	1 cut(s)	408
KpnI	GGTACC	1 cut(s)	77
Ksp22I	TGATCA	3 cut(s)	1021, 1798, 1915
KspAI	GTTAAC	1 cut(s)	1537
LmnI	GCTCC	6 cut(s)	47, 50, 291, 478, 669, 881
Lsp1109I	GCAGC	9 cut(s)	141, 448, 838, 980, 1001, 1087, 1156, 1330, 1972
LweI	GCATC	6 cut(s)	141, 592, 881, 1639, 1879, 1901
MaeI	CTAG	7 cut(s)	305, 642, 759, 774, 920, 1296, 1344
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	4 cut(s)	175, 370, 1469, 1593
MfeI	CAATTG	1 cut(s)	1311
MflI	RGATCY	4 cut(s)	23, 1263, 1553, 1933
MhlI	GDGCHC	5 cut(s)	666, 756, 978, 1738, 1948
MluCI	AATT	8 cut(s)	297, 674, 695, 726, 838, 1311, 1429, 1621
MlyI	GAGTC	5 cut(s)	111, 910, 1221, 1279, 1682
MmeI	TCCRAC	3 cut(s)	1148, 1635, 1954
Mph1103I	ATGCAT	1 cut(s)	1894
MroI	TCCGGA	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	1034
MseI	TTAA	5 cut(s)	98, 632, 1536, 1587, 1869
MslI	CAYNNNNRTG	4 cut(s)	1007, 1089, 1806, 1887
MspI	CCGG	5 cut(s)	320, 404, 409, 972, 1744
MspR9I	CCNGG	4 cut(s)	107, 750, 973, 1461
MunI	CAATTG	1 cut(s)	1311
Mva1269I	GAATGC	2 cut(s)	1119, 1882
MvaI	CCWGG	3 cut(s)	107, 750, 1461
MwoI	GCNNNNNNNGC	2 cut(s)	200, 292
NciI	CCSGG	1 cut(s)	973
NcoI	CCATGG	2 cut(s)	1207, 1675
NdeI	CATATG	1 cut(s)	431
NheI	GCTAGC	1 cut(s)	773
NlaIV	GGNNCC	3 cut(s)	75, 717, 883
NmuCI	GTSAC	1 cut(s)	370
NsbI	TGCGCA	1 cut(s)	1812
NsiI	ATGCAT	1 cut(s)	1894
NspI	RCATGY	3 cut(s)	265, 443, 1811
NspV	TTCGAA	1 cut(s)	448
PaeI	GCATGC	1 cut(s)	1811
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	2 cut(s)	327, 1912
PctI	GAATGC	2 cut(s)	1119, 1882
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	3 cut(s)	4, 279, 1747
PflMI	CCANNNNNTGG	1 cut(s)	1617
PinAI	ACCGGT	1 cut(s)	403
PleI	GAGTC	5 cut(s)	110, 910, 1220, 1279, 1682
PpsI	GAGTC	5 cut(s)	110, 910, 1220, 1279, 1682
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	3 cut(s)	105, 748, 1459
PspGI	CCWGG	3 cut(s)	105, 748, 1459
PspN4I	GGNNCC	3 cut(s)	75, 717, 883
PspPI	GGNCC	3 cut(s)	313, 406, 1976
PspXI	VCTCGAGB	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	1267
PsuI	RGATCY	4 cut(s)	23, 1263, 1553, 1933
RsaI	GTAC	4 cut(s)	75, 160, 800, 1486
RsaNI	GTAC	4 cut(s)	74, 159, 799, 1485
RseI	CAYNNNNRTG	4 cut(s)	1007, 1089, 1806, 1887
Rsr2I	CGGWCCG	1 cut(s)	406
RsrII	CGGWCCG	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	98, 632, 1536, 1587, 1869
Sau96I	GGNCC	3 cut(s)	313, 406, 1976
SchI	GAGTC	5 cut(s)	111, 910, 1221, 1279, 1682
ScrFI	CCNGG	4 cut(s)	107, 750, 973, 1461
SduI	GDGCHC	5 cut(s)	666, 756, 978, 1738, 1948
SfaNI	GCATC	6 cut(s)	141, 592, 881, 1639, 1879, 1901
SfcI	CTRYAG	1 cut(s)	782
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	3 cut(s)	313, 406, 1976
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	4 cut(s)	1007, 1089, 1806, 1887
SmlI	CTYRAG	2 cut(s)	290, 864
SmoI	CTYRAG	2 cut(s)	290, 864
SphI	GCATGC	1 cut(s)	1811
Sse9I	AATT	8 cut(s)	297, 674, 695, 726, 838, 1311, 1429, 1621
SsiI	CCGC	6 cut(s)	92, 605, 713, 924, 1409, 1787
SspI	AATATT	1 cut(s)	2023
SspMI	CTAG	7 cut(s)	305, 642, 759, 774, 920, 1296, 1344
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	4 cut(s)	105, 748, 971, 1459
StyI	CCWWGG	6 cut(s)	641, 1177, 1207, 1295, 1675, 2013
TaaI	ACNGT	5 cut(s)	17, 207, 1251, 1337, 1841
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	4 cut(s)	190, 217, 291, 448
TasI	AATT	8 cut(s)	297, 674, 695, 726, 838, 1311, 1429, 1621
TatI	WGTACW	1 cut(s)	1484
TauI	GCSGC	2 cut(s)	926, 1790
TfiI	GAWTC	3 cut(s)	4, 279, 1747
Tru1I	TTAA	5 cut(s)	98, 632, 1536, 1587, 1869
Tru9I	TTAA	5 cut(s)	98, 632, 1536, 1587, 1869
TscAI	CASTG	5 cut(s)	52, 210, 934, 1096, 1801
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	9 cut(s)	154, 436, 826, 968, 989, 1075, 1144, 1318, 1960
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	9 cut(s)	17, 377, 570, 755, 844, 1118, 1287, 1694, 1901
TspRI	CASTG	5 cut(s)	52, 210, 934, 1096, 1801
Van91I	CCANNNNNTGG	1 cut(s)	1617
VneI	GTGCAC	2 cut(s)	1734, 1944
VpaK11BI	GGWCC	3 cut(s)	313, 406, 1976
XapI	RAATTY	3 cut(s)	726, 1429, 1621
XceI	RCATGY	3 cut(s)	265, 443, 1811
XhoI	CTCGAG	1 cut(s)	290
XmaJI	CCTAGG	2 cut(s)	641, 1295
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	7 cut(s)	305, 642, 759, 774, 920, 1296, 1344
Zsp2I	ATGCAT	1 cut(s)	1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.