FvH4_4g26580

amino-acid permease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27910264 .. 27913087
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26580.t1

Sequence Viewer

Length: 1539 bp
ATGGCAGCCAACGGCGGCGTTTCCAAGGATTCCGGCCACGCTCGTCTCCATCAGCTCGGCTACAAACAAGAGCTCAAGCGTGACCTCTCGGTGGTGTCCAATTTTGCTTTCTCATTTGCCATCATATCAGTTCTCACTGGTATAACGACGCTGTACAGCACTGGGCTGAAATTTGGGGGCCCAGTTTCTATTGTGTATGGGTGGTTTATAGCTGGTTGTTTCACCATGATTGTTGGTTTGTCCATGGCTGAGATTTGTTCTTCTTACCCAACTTCTGGGGGTTTGTATTATTGGAGTGCCATGCTTGCTGGCCCCAAATGGGCACCCTTTGCTTCTTGGCTCACTGGCTGGTTCAACATAGTTGGTCAGTGGGCAGTCACAACGAGTGTGGATTTTTCACTTGCAACGCTGATTCAAGTGATCATTCTCCTTAGCACAGGTGGAAAGAACAATGATGGCTATGAGGCTTCTAAATATGTAGTCATTTGTTTCCATGGAGGAATTTTGTTTCTACATGCCATCATAAACAGTCTTCCCATCTCATATTTATCCTTCTTTGGACAGCTGGCTGCTGCATGGAATTTTGTAGGTGTCTTTGTCCTCATGATCCTCATTCCCCTTGTTGCAACGGAAAGGGCTAGCCCTAAGTTTGTATTCACTCACTTCAACACTGATAATGGCGACGGAGTTAACAACAAATTATACATATTTGTTCTGGGACTGTTAATGAGTCAATATACATTAACTGGCTATGATGCATCTGCTCATATGACAGAGGAAACCAAGAGTGCTGATATTAATGGACCAAAAGGAATAATCAGTTCCATCGGAATATCTATTATTGTTGGATGGGGTTATATCCTTGGAATCACCTTTGCTGTTACCAACATCCCACACCTTTTAGATGAGAACAATGATGCCGGTGGTTATGCCATTGCTGAAGTATTCTATCTAGCCTTCAAGAGTAGGTATGGGACTGGAGTTGGAGGAATTATATGCTTGGGAGTGGTTGCTGTTGCCATATTTTTCTGTGGAATGAGTTCAGTTACTAGCAACTCCAGGATGGCTTATGCATTCTCCAGAGATGGAGCCATGCCATTTTCCCCATTTTGGCATAAAGTGAACAAGCATGAAGTCCCATTAAATGCAGTTTGGCTTTCTGCTCTTATATCGTTTTGTATGGCACTGACATCTCTTGGAAGCCTTGTAGCGTTCAATGCCATGGTGTCTATTGCAACCATTGGACTGTACATTGCTTATGCCCTGCCCATTTTCTTCAGGGTGACCTTGGCACGCAAGTCCTTCGTTCCCGGACCTTTCAACTTGGGTCGCTATGGGATCCTTGTTGGCTGGATTGCAGTTCTTTGGGTGGCAATAATCTCGGTACTCTTCTCATTGCCTGTGGCCTATCCAATTAGCAATGAGACACTCAACTATACTCCTGTTGCAGTTGGGGGTTTGTTAATTATCACAGTTTTTGCATGGGTATTCAGTGCTCGCCACTGGTTTAAAGGTCCTATAACCAATATAGATGCATGA

Protein Analysis

513

Amino Acids

55.33

Weight (kDa)

8.58

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 32 - 485 2.5e-58 Amino acid permease
AA_permease PF00324 46 - 483 2.5e-23 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 275
AciI CCGC 1 cut(s) 15
AclWI GGATC 3 cut(s) 601, 1333, 1346
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 3 cut(s) 170, 501, 580
AcuI CTGAAG 2 cut(s) 960, 1261
AfaI GTAC 3 cut(s) 155, 1250, 1386
AfiI CCNNNNNNNGG 4 cut(s) 91, 275, 319, 1110
AgsI TTSAA 6 cut(s) 355, 416, 667, 961, 1216, 1321
AjnI CCWGG 1 cut(s) 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 55, 73, 212, 565
AluI AGCT 4 cut(s) 55, 73, 212, 565
Alw21I GWGCWC 2 cut(s) 75, 1498
Alw26I GTCTC 2 cut(s) 50, 1418
AlwI GGATC 3 cut(s) 601, 1333, 1346
AoxI GGCC 4 cut(s) 34, 178, 310, 1404
ApaI GGGCCC 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 5, 569, 572
ApoI RAATTY 3 cut(s) 170, 501, 580
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 1039
AspS9I GGNCC 6 cut(s) 178, 179, 311, 803, 1313, 1514
AsuC2I CCSGG 1 cut(s) 1311
AsuHPI GGTGA 3 cut(s) 214, 862, 1294
AsuNHI GCTAGC 1 cut(s) 638
AvaII GGWCC 3 cut(s) 803, 1313, 1514
BaeGI GKGCMC 2 cut(s) 182, 325
BamHI GGATCC 1 cut(s) 1338
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 75, 182
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 75, 1498
BbvI GCAGC 3 cut(s) 17, 556, 559
BccI CCATC 9 cut(s) 57, 128, 449, 527, 545, 833, 843, 1057, 1079
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 4 cut(s) 1285, 1319, 1362, 1396
BciT130I CCWGG 1 cut(s) 1060
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 1 cut(s) 1311
BcoDI GTCTC 2 cut(s) 50, 1418
BfaI CTAG 3 cut(s) 639, 953, 1050
BisI GCNGC 4 cut(s) 6, 16, 570, 573
BlsI GCNGC 4 cut(s) 7, 17, 571, 574
Bme1390I CCNGG 2 cut(s) 1060, 1311
Bme18I GGWCC 3 cut(s) 803, 1313, 1514
BmgT120I GGNCC 6 cut(s) 178, 179, 311, 803, 1313, 1514
BmiI GGNNCC 6 cut(s) 179, 180, 313, 324, 1090, 1340
BmrFI CCNGG 2 cut(s) 1060, 1311
BmrI ACTGGG 2 cut(s) 171, 176
BmsI GCATC 4 cut(s) 745, 767, 907, 1522
BmtI GCTAGC 1 cut(s) 642
BmuI ACTGGG 2 cut(s) 171, 176
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 3 cut(s) 999, 1042, 1063
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 1311
BsaJI CCNNGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 275, 319, 1110
Bse118I RCCGGY 1 cut(s) 920
Bse1I ACTGG 7 cut(s) 142, 166, 182, 349, 751, 982, 1508
Bse3DI GCAATG 4 cut(s) 933, 1251, 1394, 1426
BseBI CCWGG 1 cut(s) 1060
BseDI CCNNGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
BseGI GGATG 3 cut(s) 854, 888, 1068
BseLI CCNNNNNNNGG 4 cut(s) 91, 275, 319, 1110
BseMI GCAATG 4 cut(s) 933, 1251, 1394, 1426
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 7 cut(s) 142, 166, 182, 349, 751, 982, 1508
BseSI GKGCMC 2 cut(s) 182, 325
BseXI GCAGC 3 cut(s) 17, 556, 559
BshFI GGCC 4 cut(s) 36, 180, 312, 1406
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 2 cut(s) 75, 1498
BsiSI CCGG 3 cut(s) 33, 921, 1311
BslFI GGGAC 3 cut(s) 732, 988, 1121
BslI CCNNNNNNNGG 4 cut(s) 91, 275, 319, 1110
BsmAI GTCTC 2 cut(s) 50, 1418
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 3 cut(s) 732, 988, 1121
BsmI GAATGC 1 cut(s) 1073
BsnI GGCC 4 cut(s) 36, 180, 312, 1406
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 4 cut(s) 75, 182, 325, 1498
Bsp1407I TGTACA 2 cut(s) 153, 1248
Bsp143I GATC 3 cut(s) 420, 606, 1338
Bsp19I CCATGG 3 cut(s) 243, 493, 1221
BspACI CCGC 1 cut(s) 15
BspANI GGCC 4 cut(s) 36, 180, 312, 1406
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 6 cut(s) 179, 180, 313, 324, 1090, 1340
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 3 cut(s) 601, 1333, 1346
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 4 cut(s) 933, 1251, 1394, 1426
BsrFI RCCGGY 1 cut(s) 920
BsrGI TGTACA 2 cut(s) 153, 1248
BsrI ACTGG 7 cut(s) 142, 166, 182, 349, 751, 982, 1508
BssAI RCCGGY 1 cut(s) 920
BssECI CCNNGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
BssMI GATC 3 cut(s) 420, 606, 1338
BssT1I CCWWGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
Bst2UI CCWGG 1 cut(s) 1060
Bst4CI ACNGT 4 cut(s) 530, 723, 1248, 1474
Bst6I CTCTTC 1 cut(s) 1394
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 2 cut(s) 153, 1248
BstC8I GCNNGC 6 cut(s) 306, 310, 567, 640, 1294, 1498
BstDEI CTNAG 3 cut(s) 249, 431, 645
BstDSI CCRYGG 3 cut(s) 243, 493, 1221
BstEII GGTNACC 1 cut(s) 1282
BstF5I GGATG 3 cut(s) 854, 888, 1068
BstKTI GATC 3 cut(s) 423, 609, 1341
BstMAI GTCTC 2 cut(s) 50, 1418
BstMBI GATC 3 cut(s) 420, 606, 1338
BstMWI GCNNNNNNNGC 3 cut(s) 305, 329, 1217
BstNI CCWGG 1 cut(s) 1060
BstNSI RCATGY 1 cut(s) 518
BstPI GGTNACC 1 cut(s) 1282
BstSCI CCNGG 2 cut(s) 1058, 1309
BstSLI GKGCMC 2 cut(s) 182, 325
BstV1I GCAGC 3 cut(s) 17, 556, 559
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 1338
BstYI RGATCY 1 cut(s) 1338
BsuRI GGCC 4 cut(s) 36, 180, 312, 1406
BtgI CCRYGG 3 cut(s) 243, 493, 1221
BtsCI GGATG 3 cut(s) 854, 888, 1068
BtsIMutI CAGTG 8 cut(s) 135, 159, 342, 374, 669, 1184, 1498, 1501
Cac8I GCNNGC 6 cut(s) 306, 310, 567, 640, 1294, 1498
CciI TCATGA 1 cut(s) 603
Cfr10I RCCGGY 1 cut(s) 920
Cfr13I GGNCC 6 cut(s) 178, 179, 311, 803, 1313, 1514
CseI GACGC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 154, 1249, 1385
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviQI GTAC 3 cut(s) 154, 1249, 1385
DdeI CTNAG 3 cut(s) 249, 431, 645
DpnI GATC 3 cut(s) 422, 608, 1340
DpnII GATC 3 cut(s) 420, 606, 1338
DraI TTTAAA 1 cut(s) 1510
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 1394
EarI CTCTTC 1 cut(s) 1394
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
Eco24I GRGCYC 2 cut(s) 75, 182
Eco47I GGWCC 3 cut(s) 803, 1313, 1514
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 960, 1261
Eco91I GGTNACC 1 cut(s) 1282
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 2 cut(s) 178, 1514
EcoO65I GGTNACC 1 cut(s) 1282
EcoRII CCWGG 1 cut(s) 1058
EcoT14I CCWWGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
EcoT22I ATGCAT 3 cut(s) 760, 1075, 1537
EcoT38I GRGCYC 2 cut(s) 75, 182
ErhI CCWWGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
Esp3I CGTCTC 1 cut(s) 50
FaqI GGGAC 3 cut(s) 732, 988, 1121
FauNDI CATATG 1 cut(s) 768
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 6, 16, 570, 573
FokI GGATG 3 cut(s) 861, 875, 1075
FriOI GRGCYC 2 cut(s) 75, 182
Fsp4HI GCNGC 4 cut(s) 6, 16, 570, 573
FspBI CTAG 3 cut(s) 639, 953, 1050
GluI GCNGC 4 cut(s) 6, 16, 570, 573
GsuI CTGGAG 3 cut(s) 999, 1042, 1063
HaeIII GGCC 4 cut(s) 36, 180, 312, 1406
HapII CCGG 3 cut(s) 33, 921, 1311
HgaI GACGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 4 cut(s) 29, 412, 730, 867
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 3 cut(s) 33, 921, 1311
HphI GGTGA 3 cut(s) 214, 862, 1294
Hpy166II GTNNAC 2 cut(s) 691, 1123
Hpy188I TCNGA 1 cut(s) 830
Hpy188III TCNNGA 3 cut(s) 604, 961, 1080
Hpy8I GTNNAC 2 cut(s) 691, 1123
Hpy99I CGWCG 2 cut(s) 151, 686
HpyAV CCTTC 3 cut(s) 562, 967, 1312
HpyCH4III ACNGT 4 cut(s) 530, 723, 1248, 1474
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 329, 1217
HpyF3I CTNAG 3 cut(s) 249, 431, 645
Ksp22I TGATCA 1 cut(s) 420
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 3 cut(s) 420, 606, 1338
LmnI GCTCC 1 cut(s) 1088
Lsp1109I GCAGC 3 cut(s) 17, 556, 559
LweI GCATC 4 cut(s) 745, 767, 907, 1522
MaeI CTAG 3 cut(s) 639, 953, 1050
MaeIII GTNAC 5 cut(s) 80, 376, 880, 1045, 1282
MalI GATC 3 cut(s) 422, 608, 1340
MboI GATC 3 cut(s) 420, 606, 1338
MboII GAAGA 4 cut(s) 252, 524, 1267, 1381
MflI RGATCY 1 cut(s) 1338
MhlI GDGCHC 4 cut(s) 75, 182, 325, 1498
MluCI AATT 8 cut(s) 100, 170, 501, 580, 698, 990, 1413, 1464
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 826, 964
MnlI CCTC 7 cut(s) 95, 457, 491, 611, 620, 769, 980
Mph1103I ATGCAT 3 cut(s) 760, 1075, 1537
MroXI GAANNNNTTC 1 cut(s) 1039
MseI TTAA 7 cut(s) 690, 725, 743, 798, 1142, 1463, 1509
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 3 cut(s) 33, 921, 1311
MspR9I CCNGG 2 cut(s) 1060, 1311
Mva1269I GAATGC 1 cut(s) 1073
MvaI CCWGG 1 cut(s) 1060
MwoI GCNNNNNNNGC 3 cut(s) 305, 329, 1217
NciI CCSGG 1 cut(s) 1311
NcoI CCATGG 3 cut(s) 243, 493, 1221
NdeI CATATG 1 cut(s) 768
NdeII GATC 3 cut(s) 420, 606, 1338
NheI GCTAGC 1 cut(s) 638
NlaIV GGNNCC 6 cut(s) 179, 180, 313, 324, 1090, 1340
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 3 cut(s) 80, 376, 1282
NsiI ATGCAT 3 cut(s) 760, 1075, 1537
NspI RCATGY 1 cut(s) 518
PagI TCATGA 1 cut(s) 603
PctI GAATGC 1 cut(s) 1073
PdmI GAANNNNTTC 1 cut(s) 1039
PfeI GAWTC 3 cut(s) 29, 412, 867
PflMI CCANNNNNTGG 1 cut(s) 275
PfoI TCCNGGA 2 cut(s) 1058, 1309
PkrI GCNGC 4 cut(s) 7, 17, 571, 574
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 1 cut(s) 1514
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 1514
Psp6I CCWGG 1 cut(s) 1058
PspEI GGTNACC 1 cut(s) 1282
PspGI CCWGG 1 cut(s) 1058
PspN4I GGNNCC 6 cut(s) 179, 180, 313, 324, 1090, 1340
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 6 cut(s) 178, 179, 311, 803, 1313, 1514
PspPPI RGGWCCY 1 cut(s) 1514
PsuI RGATCY 1 cut(s) 1338
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 3 cut(s) 155, 1250, 1386
RsaNI GTAC 3 cut(s) 154, 1249, 1385
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 7 cut(s) 690, 725, 743, 798, 1142, 1463, 1509
SatI GCNGC 4 cut(s) 6, 16, 570, 573
Sau3AI GATC 3 cut(s) 420, 606, 1338
Sau96I GGNCC 6 cut(s) 178, 179, 311, 803, 1313, 1514
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 2 cut(s) 1060, 1311
SduI GDGCHC 4 cut(s) 75, 182, 325, 1498
SfaNI GCATC 4 cut(s) 745, 767, 907, 1522
SinI GGWCC 3 cut(s) 803, 1313, 1514
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 8 cut(s) 100, 170, 501, 580, 698, 990, 1413, 1464
SsiI CCGC 1 cut(s) 15
SspMI CTAG 3 cut(s) 639, 953, 1050
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 1058, 1309
StyI CCWWGG 6 cut(s) 24, 243, 493, 862, 1221, 1287
TaaI ACNGT 4 cut(s) 530, 723, 1248, 1474
TasI AATT 8 cut(s) 100, 170, 501, 580, 698, 990, 1413, 1464
TatI WGTACW 2 cut(s) 153, 1248
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 29, 412, 867
Tru1I TTAA 7 cut(s) 690, 725, 743, 798, 1142, 1463, 1509
Tru9I TTAA 7 cut(s) 690, 725, 743, 798, 1142, 1463, 1509
TscAI CASTG 8 cut(s) 142, 166, 349, 374, 676, 1191, 1498, 1508
TseFI GTSAC 3 cut(s) 80, 376, 1282
TseI GCWGC 3 cut(s) 5, 569, 572
Tsp45I GTSAC 3 cut(s) 80, 376, 1282
TspDTI ATGAA 1 cut(s) 1146
TspGWI ACGGA 2 cut(s) 644, 699
TspRI CASTG 8 cut(s) 142, 166, 349, 374, 676, 1191, 1498, 1508
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 3 cut(s) 803, 1313, 1514
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 3 cut(s) 170, 501, 580
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 1039
XspI CTAG 3 cut(s) 639, 953, 1050
Zsp2I ATGCAT 3 cut(s) 760, 1075, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.