Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

60985858 .. 60994059

Gene Structure 8202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGACTCAAATCAAGGATATCATGGAAGAGGAACATCATCATCCTCTTCTTCAAGAAGATGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCTGTCCTCACCGGTCTGAGCACGACGTTTGGTATTGGTCTCACATATGGTGGGACCATAACGATGGTGTACGGGTGGCCGGTGGTGGGGATGCTGACGCTGGTGGTGGGACTATCGATGGCTGAGATTTGCTCCGCGTACCCGACTTCCGGTGGACTTTACTTCTGGAGCGCCAAGCTCTCTGGCAATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGGTTCAACATAGTTGGTCAGTGGGCAGTCACAACTAGTATAGATTTTTCACTTGCAACGCTGATTCAAGTGATGATTCTCCTTAGCACAGGTGGGAAGAATAATGATGGCTATCAGGCTTCCAAATACGTAGTTATTTGTTTCCATGGAGGAATTTTGCTTCTACATGCTATCATAAACAGTCTTCCCATCTGGTATTTATCTTTCTTTGGACAGCTGGCTGCTGCATGGAATTTTTTAGGTGTCTTTGTCCTTATGATCCTCATTCCCCTCGTTGCAACGGAGAGGGCTAGTGCCAAGTTTGTATTCACTCACTTCAACACTGATAATGGCGATGGAGTCAACAACAAATTGTACATTTTTGTTCTGGGACTGTTAATGAGTCAATATACCTTAACTGGCTATGATGCATCTGCTCATATGACAGAGGAAACCAAGAGCGCTGATATCAACGGACCAAAAGGAATAATCAGTTCCATCGGAATATCTATTATTGTTGGATGGGGTTATATCCTTGGGATCACCTTTGCTGTTACCAACATCCCGTACCTTTTGGATGAGAACAATGATGCCGGTGGTTATGCCATTGCTGAAGTATTTTATTTAGCATTCAAGAGTAGGTATGGAACTGGAGTTGGAGGAATCATATGCTTGGGAGTGGTTGCTGTTGCCATATTTTTCTGTGGAATGAGTTCAGTTACTAGCAACTCCAGGATGGCTTATGCATTCTCTAGAGATGGAGCCATGCCATTTTCACCGTTTTGGCATAAAGTGAACAAGCATGAAGTCCCCATAAATGCAGTTTGGCTTTCTGCTCTTATATCATTTTGCATGGCACTGACATCTCTTGGGAGCCTTGTGGCGTTCAATGCCATGGTGTCTATTGCAACCATTGGACTGTACATTGCTTATGCCCTGCCCATCTTCTTTAGGGTGACCTTGGCGCGCAAGTCCTTCGTCCCCGGACCTTTCAACTTGGGCCGCTATGGGATCCTTGTTGGCTGGATTGCAGTGCTTTGGGTGGCAATCATCTCAGTCCTCTTCTCGTTGCCTGTGGCCTATCCAATTAGCAACGAGACACTCAACTATACACCTGTTGCAGTAGGCGGTTTGTTAATTATCACAGTATTTGCTTGGATATTCAGTGCTCGACACTGGTTTAAAGGTCCTATATCCAACATAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015174 GO:0015175 GO:0015179 GO:0015180 GO:0015181 GO:0015185 GO:0015189 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015718 GO:0015800 GO:0015802 GO:0015804 GO:0015807 GO:0015808 GO:0015809 GO:0015812 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022858 GO:0031224 GO:0031226 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

525

Amino Acids

57.07

Weight (kDa)

6.79

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	48 - 498	1.4e-55	Amino acid permease
AA_permease	PF00324	59 - 506	4e-22	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	82, 302, 1333
AciI	CCGC	4 cut(s)	118, 300, 1369, 1494
AclWI	GGATC	4 cut(s)	640, 914, 1372, 1385
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	3 cut(s)	139, 540, 619
AcuI	CTGAAG	1 cut(s)	999
AfaI	GTAC	5 cut(s)	236, 305, 743, 935, 1289
AfeI	AGCGCT	1 cut(s)	829
AfiI	CCNNNNNNNGG	2 cut(s)	251, 314
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	8 cut(s)	53, 88, 394, 455, 706, 1000, 1255, 1360
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	1097
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AluBI	AGCT	3 cut(s)	94, 343, 604
AluI	AGCT	3 cut(s)	94, 343, 604
Alw21I	GWGCWC	2 cut(s)	188, 1537
Alw26I	GTCTC	3 cut(s)	169, 209, 1457
AlwI	GGATC	4 cut(s)	640, 914, 1372, 1385
Aor51HI	AGCGCT	1 cut(s)	829
AoxI	GGCC	3 cut(s)	242, 1366, 1443
ApeKI	GCWGC	2 cut(s)	608, 611
ApoI	RAATTY	3 cut(s)	139, 540, 619
AsiGI	ACCGGT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	1078
AspLEI	GCGC	5 cut(s)	84, 338, 830, 1333, 1335
AspS9I	GGNCC	6 cut(s)	219, 362, 842, 1352, 1366, 1553
AsuC2I	CCSGG	1 cut(s)	1350
AsuHPI	GGTGA	4 cut(s)	166, 901, 1134, 1333
AvaII	GGWCC	5 cut(s)	219, 362, 842, 1352, 1553
BamHI	GGATCC	1 cut(s)	1377
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	188, 1537
BbvI	GCAGC	2 cut(s)	595, 598
BcgI	CGANNNNNNTGC	2 cut(s)	1324, 1358
BciT130I	CCWGG	1 cut(s)	1099
BcnI	CCSGG	1 cut(s)	1350
BcoDI	GTCTC	3 cut(s)	169, 209, 1457
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	4 cut(s)	423, 678, 1089, 1119
BfoI	RGCGCY	2 cut(s)	339, 831
BisI	GCNGC	4 cut(s)	118, 609, 612, 1369
BlsI	GCNGC	4 cut(s)	119, 610, 613, 1370
Bme1390I	CCNGG	2 cut(s)	1099, 1350
Bme18I	GGWCC	5 cut(s)	219, 362, 842, 1352, 1553
BmgT120I	GGNCC	6 cut(s)	219, 362, 842, 1352, 1366, 1553
BmiI	GGNNCC	5 cut(s)	220, 363, 1129, 1241, 1379
BmrFI	CCNGG	2 cut(s)	1099, 1350
BmsI	GCATC	6 cut(s)	49, 246, 784, 806, 946, 1561
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	3 cut(s)	352, 1038, 1081
Bpu10I	CCTNAGC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	1350
Bsa29I	ATCGAT	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	532, 901, 1260, 1326, 1348
BsaWI	WCCGGW	2 cut(s)	176, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 314
Bse118I	RCCGGY	3 cut(s)	176, 244, 959
Bse1I	ACTGG	4 cut(s)	388, 790, 1021, 1547
Bse3DI	GCAATG	2 cut(s)	972, 1290
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	1099
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	5 cut(s)	532, 901, 1260, 1326, 1348
BseGI	GGATG	6 cut(s)	40, 261, 893, 927, 949, 1107
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	251, 314
BseMI	GCAATG	2 cut(s)	972, 1290
BseMII	CTCAG	5 cut(s)	127, 159, 173, 279, 1434
BseNI	ACTGG	4 cut(s)	388, 790, 1021, 1547
BsePI	GCGCGC	1 cut(s)	1331
BseXI	GCAGC	2 cut(s)	595, 598
Bsh1236I	CGCG	3 cut(s)	82, 302, 1333
BshFI	GGCC	3 cut(s)	244, 1368, 1445
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	188, 1537
BsiSI	CCGG	5 cut(s)	177, 245, 315, 960, 1350
BslFI	GGGAC	6 cut(s)	232, 288, 375, 771, 1160, 1331
BslI	CCNNNNNNNGG	2 cut(s)	251, 314
BsmAI	GTCTC	3 cut(s)	169, 209, 1457
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	6 cut(s)	232, 288, 375, 771, 1160, 1331
BsmI	GAATGC	2 cut(s)	995, 1112
BsnI	GGCC	3 cut(s)	244, 1368, 1445
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	188, 1537
Bsp1407I	TGTACA	2 cut(s)	741, 1287
Bsp143I	GATC	3 cut(s)	645, 906, 1377
Bsp19I	CCATGG	2 cut(s)	532, 1260
BspACI	CCGC	4 cut(s)	118, 300, 1369, 1494
BspANI	GGCC	3 cut(s)	244, 1368, 1445
BspCNI	CTCAG	5 cut(s)	126, 158, 174, 280, 1433
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	82, 302, 1333
BspLI	GGNNCC	5 cut(s)	220, 363, 1129, 1241, 1379
BspPI	GGATC	4 cut(s)	640, 914, 1372, 1385
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	972, 1290
BsrFI	RCCGGY	3 cut(s)	176, 244, 959
BsrGI	TGTACA	2 cut(s)	741, 1287
BsrI	ACTGG	4 cut(s)	388, 790, 1021, 1547
BssAI	RCCGGY	3 cut(s)	176, 244, 959
BssECI	CCNNGG	5 cut(s)	532, 901, 1260, 1326, 1348
BssHII	GCGCGC	1 cut(s)	1331
BssMI	GATC	3 cut(s)	645, 906, 1377
BssT1I	CCWWGG	4 cut(s)	532, 901, 1260, 1326
Bst2UI	CCWGG	1 cut(s)	1099
Bst4CI	ACNGT	5 cut(s)	569, 762, 1146, 1287, 1513
Bst6I	CTCTTC	3 cut(s)	21, 51, 1433
BstAUI	TGTACA	2 cut(s)	741, 1287
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	606, 1333
BstDEI	CTNAG	6 cut(s)	113, 145, 182, 288, 470, 1420
BstDSI	CCRYGG	2 cut(s)	532, 1260
BstEII	GGTNACC	1 cut(s)	1321
BstF5I	GGATG	6 cut(s)	40, 261, 893, 927, 949, 1107
BstFNI	CGCG	3 cut(s)	82, 302, 1333
BstH2I	RGCGCY	2 cut(s)	339, 831
BstHHI	GCGC	5 cut(s)	84, 338, 830, 1333, 1335
BstKTI	GATC	3 cut(s)	648, 909, 1380
BstMAI	GTCTC	3 cut(s)	169, 209, 1457
BstMBI	GATC	3 cut(s)	645, 906, 1377
BstMWI	GCNNNNNNNGC	1 cut(s)	1256
BstNI	CCWGG	1 cut(s)	1099
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	1321
BstSCI	CCNGG	2 cut(s)	1097, 1348
BstSNI	TACGTA	1 cut(s)	517
BstUI	CGCG	3 cut(s)	82, 302, 1333
BstV1I	GCAGC	2 cut(s)	595, 598
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	1377
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	1377
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	244, 1368, 1445
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	2 cut(s)	532, 1260
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	6 cut(s)	40, 261, 893, 927, 949, 1107
BtsI	GCAGTG	1 cut(s)	1404
BtsIMutI	CAGTG	8 cut(s)	153, 381, 413, 708, 1223, 1404, 1537, 1540
Cac8I	GCNNGC	2 cut(s)	606, 1333
CfoI	GCGC	5 cut(s)	84, 338, 830, 1333, 1335
Cfr10I	RCCGGY	3 cut(s)	176, 244, 959
Cfr13I	GGNCC	6 cut(s)	219, 362, 842, 1352, 1366, 1553
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	5 cut(s)	235, 304, 742, 934, 1288
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	9 cut(s)	22, 533, 554, 615, 1132, 1169, 1219, 1261, 1575
CviQI	GTAC	5 cut(s)	235, 304, 742, 934, 1288
DdeI	CTNAG	6 cut(s)	113, 145, 182, 288, 470, 1420
DpnI	GATC	3 cut(s)	647, 908, 1379
DpnII	GATC	3 cut(s)	645, 906, 1377
DraI	TTTAAA	1 cut(s)	1549
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	3 cut(s)	21, 51, 1433
EarI	CTCTTC	3 cut(s)	21, 51, 1433
Eco105I	TACGTA	1 cut(s)	517
Eco130I	CCWWGG	4 cut(s)	532, 901, 1260, 1326
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	19, 835
Eco47I	GGWCC	5 cut(s)	219, 362, 842, 1352, 1553
Eco47III	AGCGCT	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	999
Eco91I	GGTNACC	1 cut(s)	1321
EcoO109I	RGGNCCY	2 cut(s)	362, 1553
EcoO65I	GGTNACC	1 cut(s)	1321
EcoRII	CCWGG	1 cut(s)	1097
EcoRV	GATATC	2 cut(s)	19, 835
EcoT14I	CCWWGG	4 cut(s)	532, 901, 1260, 1326
EcoT22I	ATGCAT	3 cut(s)	799, 1114, 1576
ErhI	CCWWGG	4 cut(s)	532, 901, 1260, 1326
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	9 cut(s)	25, 536, 557, 618, 1135, 1172, 1222, 1264, 1578
FaqI	GGGAC	6 cut(s)	232, 288, 375, 771, 1160, 1331
FatI	CATG	9 cut(s)	21, 532, 553, 614, 1131, 1168, 1218, 1260, 1574
FauNDI	CATATG	3 cut(s)	211, 807, 1034
Fnu4HI	GCNGC	4 cut(s)	118, 609, 612, 1369
FokI	GGATG	6 cut(s)	27, 268, 900, 914, 956, 1114
Fsp4HI	GCNGC	4 cut(s)	118, 609, 612, 1369
FspBI	CTAG	4 cut(s)	423, 678, 1089, 1119
GlaI	GCGC	5 cut(s)	83, 337, 829, 1332, 1334
GluI	GCNGC	4 cut(s)	118, 609, 612, 1369
GsuI	CTGGAG	3 cut(s)	352, 1038, 1081
HaeII	RGCGCY	2 cut(s)	339, 831
HaeIII	GGCC	3 cut(s)	244, 1368, 1445
HapII	CCGG	5 cut(s)	177, 245, 315, 960, 1350
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	5 cut(s)	84, 338, 830, 1333, 1335
Hin1II	CATG	9 cut(s)	25, 536, 557, 618, 1135, 1172, 1222, 1264, 1578
Hin6I	GCGC	5 cut(s)	82, 336, 828, 1331, 1333
HinP1I	GCGC	5 cut(s)	82, 336, 828, 1331, 1333
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	7 cut(s)	4, 77, 451, 463, 726, 769, 1029
HpaII	CCGG	5 cut(s)	177, 245, 315, 960, 1350
HphI	GGTGA	4 cut(s)	166, 901, 1134, 1333
Hpy166II	GTNNAC	4 cut(s)	235, 320, 730, 1162
Hpy188I	TCNGA	3 cut(s)	73, 183, 869
Hpy188III	TCNNGA	4 cut(s)	53, 331, 1000, 1119
Hpy8I	GTNNAC	4 cut(s)	235, 320, 730, 1162
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	1351
HpyCH4III	ACNGT	5 cut(s)	569, 762, 1146, 1287, 1513
HpyCH4IV	ACGT	2 cut(s)	191, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1256
HpyF3I	CTNAG	6 cut(s)	113, 145, 182, 288, 470, 1420
HpySE526I	ACGT	2 cut(s)	191, 516
Hsp92II	CATG	9 cut(s)	25, 536, 557, 618, 1135, 1172, 1222, 1264, 1578
HspAI	GCGC	5 cut(s)	82, 336, 828, 1331, 1333
Kzo9I	GATC	3 cut(s)	645, 906, 1377
LmnI	GCTCC	4 cut(s)	302, 333, 1127, 1239
Lsp1109I	GCAGC	2 cut(s)	595, 598
LweI	GCATC	6 cut(s)	49, 246, 784, 806, 946, 1561
MaeI	CTAG	4 cut(s)	423, 678, 1089, 1119
MaeII	ACGT	2 cut(s)	191, 516
MaeIII	GTNAC	6 cut(s)	98, 148, 415, 919, 1084, 1321
MalI	GATC	3 cut(s)	647, 908, 1379
MboI	GATC	3 cut(s)	645, 906, 1377
MboII	GAAGA	9 cut(s)	38, 38, 41, 60, 68, 496, 563, 1303, 1420
MflI	RGATCY	1 cut(s)	1377
MhlI	GDGCHC	2 cut(s)	188, 1537
MluCI	AATT	6 cut(s)	139, 540, 619, 737, 1452, 1503
MlyI	GAGTC	2 cut(s)	735, 778
MmeI	TCCRAC	2 cut(s)	865, 1003
Mph1103I	ATGCAT	3 cut(s)	799, 1114, 1576
MroXI	GAANNNNTTC	1 cut(s)	1078
MseI	TTAA	4 cut(s)	764, 782, 1502, 1548
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	5 cut(s)	177, 245, 315, 960, 1350
MspR9I	CCNGG	2 cut(s)	1099, 1350
Mva1269I	GAATGC	2 cut(s)	995, 1112
MvaI	CCWGG	1 cut(s)	1099
MvnI	CGCG	3 cut(s)	82, 302, 1333
MwoI	GCNNNNNNNGC	1 cut(s)	1256
NciI	CCSGG	1 cut(s)	1350
NcoI	CCATGG	2 cut(s)	532, 1260
NdeI	CATATG	3 cut(s)	211, 807, 1034
NdeII	GATC	3 cut(s)	645, 906, 1377
NlaIII	CATG	9 cut(s)	25, 536, 557, 618, 1135, 1172, 1222, 1264, 1578
NlaIV	GGNNCC	5 cut(s)	220, 363, 1129, 1241, 1379
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	148, 415, 1321
NsiI	ATGCAT	3 cut(s)	799, 1114, 1576
NspI	RCATGY	1 cut(s)	557
PauI	GCGCGC	1 cut(s)	1331
PctI	GAATGC	2 cut(s)	995, 1112
PdmI	GAANNNNTTC	1 cut(s)	1078
PfeI	GAWTC	4 cut(s)	77, 451, 463, 1029
PfoI	TCCNGGA	1 cut(s)	1097
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	4 cut(s)	119, 610, 613, 1370
PleI	GAGTC	2 cut(s)	734, 777
PpsI	GAGTC	2 cut(s)	734, 777
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	2 cut(s)	362, 1553
Psp5II	RGGWCCY	2 cut(s)	362, 1553
Psp6I	CCWGG	1 cut(s)	1097
PspEI	GGTNACC	1 cut(s)	1321
PspGI	CCWGG	1 cut(s)	1097
PspN4I	GGNNCC	5 cut(s)	220, 363, 1129, 1241, 1379
PspPI	GGNCC	6 cut(s)	219, 362, 842, 1352, 1366, 1553
PspPPI	RGGWCCY	2 cut(s)	362, 1553
PsuI	RGATCY	1 cut(s)	1377
PteI	GCGCGC	1 cut(s)	1331
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	5 cut(s)	236, 305, 743, 935, 1289
RsaNI	GTAC	5 cut(s)	235, 304, 742, 934, 1288
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	764, 782, 1502, 1548
SatI	GCNGC	4 cut(s)	118, 609, 612, 1369
Sau3AI	GATC	3 cut(s)	645, 906, 1377
Sau96I	GGNCC	6 cut(s)	219, 362, 842, 1352, 1366, 1553
SchI	GAGTC	2 cut(s)	735, 778
ScrFI	CCNGG	2 cut(s)	1099, 1350
SduI	GDGCHC	2 cut(s)	188, 1537
SfaNI	GCATC	6 cut(s)	49, 246, 784, 806, 946, 1561
SinI	GGWCC	5 cut(s)	219, 362, 842, 1352, 1553
SmiMI	CAYNNNNRTG	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	517
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	6 cut(s)	139, 540, 619, 737, 1452, 1503
SsiI	CCGC	4 cut(s)	118, 300, 1369, 1494
SspMI	CTAG	4 cut(s)	423, 678, 1089, 1119
StyD4I	CCNGG	2 cut(s)	1097, 1348
StyI	CCWWGG	4 cut(s)	532, 901, 1260, 1326
TaaI	ACNGT	5 cut(s)	569, 762, 1146, 1287, 1513
TaiI	ACGT	2 cut(s)	194, 519
TaqI	TCGA	2 cut(s)	281, 1537
TasI	AATT	6 cut(s)	139, 540, 619, 737, 1452, 1503
TatI	WGTACW	2 cut(s)	741, 1287
TauI	GCSGC	2 cut(s)	120, 1371
TfiI	GAWTC	4 cut(s)	77, 451, 463, 1029
Tru1I	TTAA	4 cut(s)	764, 782, 1502, 1548
Tru9I	TTAA	4 cut(s)	764, 782, 1502, 1548
TscAI	CASTG	8 cut(s)	153, 388, 413, 715, 1230, 1404, 1537, 1547
TseFI	GTSAC	3 cut(s)	148, 415, 1321
TseI	GCWGC	2 cut(s)	608, 611
Tsp45I	GTSAC	3 cut(s)	148, 415, 1321
TspDTI	ATGAA	1 cut(s)	1185
TspGWI	ACGGA	2 cut(s)	683, 855
TspRI	CASTG	8 cut(s)	153, 388, 413, 715, 1230, 1404, 1537, 1547
VpaK11BI	GGWCC	5 cut(s)	219, 362, 842, 1352, 1553
XapI	RAATTY	3 cut(s)	139, 540, 619
XbaI	TCTAGA	1 cut(s)	1118
XceI	RCATGY	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	1078
XspI	CTAG	4 cut(s)	423, 678, 1089, 1119
Zsp2I	ATGCAT	3 cut(s)	799, 1114, 1576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.