Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

56383800 .. 56385584

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACTCAAATCAAGGATACCATGGAAGAGGAACATCATCACCCTCTTCTTGAAGAAGACGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCTGTCCTCACCGGTCTGAGCACGACGTTTGGTATTGGTCTCACATATGGTGGGACCATAACGATGGTGTACGGGTGGCCTGTGGTGGGGATGCTGACGCTGGTGGTGGGACTATCGATGGCTGAGATTTGCTCCGCGTACCCGACTTCCGGTGGTCTCTATTTCTGGAGTGCCAAACTCTCTGGCGATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGCTTTTTCTTTCGACACTCCTCTAGCCTTTTGAACCCGGCCCAGCCAGCCCATAAGATAACAAGATCCAACGGGCTAACCCGCCCCTTCATCCCTACCCAGAGTCCATATATGAAGATGGCCACAAGGATAAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

175

Amino Acids

19.27

Weight (kDa)

7.82

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	48 - 132	2.4e-09	Amino acid permease
AA_permease	PF00324	59 - 130	2.9e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 302
AciI	CCGC	3 cut(s)	118, 300, 469
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	236, 305
AfiI	CCNNNNNNNGG	2 cut(s)	251, 314
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	53, 88, 421
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	3 cut(s)	169, 209, 326
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	3 cut(s)	242, 426, 507
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	139
AsiGI	ACCGGT	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	219, 362, 427
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	32, 166
AvaII	GGWCC	2 cut(s)	219, 362
BalI	TGGCCA	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	4 cut(s)	167, 223, 277, 499
BciVI	GTATCC	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	3 cut(s)	169, 209, 326
BfaI	CTAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	118, 388
BlsI	GCNGC	2 cut(s)	119, 389
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	2 cut(s)	219, 362
BmgT120I	GGNCC	3 cut(s)	219, 362, 427
BmiI	GGNNCC	2 cut(s)	220, 363
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	2 cut(s)	209, 326
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	176, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 314
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	261, 477
BseLI	CCNNNNNNNGG	2 cut(s)	251, 314
BseMII	CTCAG	4 cut(s)	127, 159, 173, 279
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	429
Bsh1236I	CGCG	2 cut(s)	82, 302
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	244, 428, 509
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	177, 315, 425
BslFI	GGGAC	3 cut(s)	232, 288, 375
BslI	CCNNNNNNNGG	2 cut(s)	251, 314
BsmAI	GTCTC	3 cut(s)	169, 209, 326
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	3 cut(s)	232, 288, 375
BsnI	GGCC	3 cut(s)	244, 428, 509
Bso31I	GGTCTC	2 cut(s)	209, 326
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	352, 452
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	118, 300, 469
BspANI	GGCC	3 cut(s)	244, 428, 509
BspCNI	CTCAG	4 cut(s)	126, 158, 174, 280
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	82, 302
BspLI	GGNNCC	2 cut(s)	220, 363
BspPI	GGATC	1 cut(s)	447
BspTNI	GGTCTC	2 cut(s)	209, 326
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	352, 452
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	21, 51
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	113, 145, 182, 288
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	261, 477
BstFNI	CGCG	2 cut(s)	82, 302
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	355, 455
BstMAI	GTCTC	3 cut(s)	169, 209, 326
BstMBI	GATC	2 cut(s)	352, 452
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	423
BstUI	CGCG	2 cut(s)	82, 302
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	244, 428, 509
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	261, 477
BtsIMutI	CAGTG	2 cut(s)	153, 381
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	219, 362, 427
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	2 cut(s)	68, 271
Csp6I	GTAC	2 cut(s)	235, 304
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	2 cut(s)	235, 304
DdeI	CTNAG	4 cut(s)	113, 145, 182, 288
DpnI	GATC	2 cut(s)	354, 454
DpnII	GATC	2 cut(s)	352, 452
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	21, 51
EarI	CTCTTC	2 cut(s)	21, 51
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	209, 326
Eco47I	GGWCC	2 cut(s)	219, 362
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	25
FaqI	GGGAC	3 cut(s)	232, 288, 375
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	476
FauNDI	CATATG	2 cut(s)	211, 524
Fnu4HI	GCNGC	2 cut(s)	118, 388
FokI	GGATG	2 cut(s)	268, 464
Fsp4HI	GCNGC	2 cut(s)	118, 388
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	118, 388
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	244, 428, 509
HapII	CCGG	3 cut(s)	177, 315, 425
HgaI	GACGC	2 cut(s)	68, 271
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	4, 77, 490
HpaII	CCGG	3 cut(s)	177, 315, 425
HphI	GGTGA	2 cut(s)	32, 166
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	73, 183
Hpy188III	TCNNGA	2 cut(s)	50, 331
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	4 cut(s)	113, 145, 182, 288
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	352, 452
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	98, 148
MalI	GATC	2 cut(s)	354, 454
MboI	GATC	2 cut(s)	352, 452
MboII	GAAGA	6 cut(s)	38, 38, 60, 65, 68, 514
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	4 cut(s)	22, 54, 182, 418
Mox20I	TGGCCA	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	3 cut(s)	177, 315, 425
MspR9I	CCNGG	1 cut(s)	425
MvnI	CGCG	2 cut(s)	82, 302
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	211, 524
NdeII	GATC	2 cut(s)	352, 452
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	220, 363
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	119, 389
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	220, 363
PspPI	GGNCC	3 cut(s)	219, 362, 427
PspPPI	RGGWCCY	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	452
PvuI	CGATCG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	236, 305
RsaNI	GTAC	2 cut(s)	235, 304
RseI	CAYNNNNRTG	1 cut(s)	227
SatI	GCNGC	2 cut(s)	118, 388
Sau3AI	GATC	2 cut(s)	352, 452
Sau96I	GGNCC	3 cut(s)	219, 362, 427
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	96, 194, 367
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	219, 362
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	3 cut(s)	118, 300, 469
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	281, 400
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	2 cut(s)	153, 388
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	466, 515
TspRI	CASTG	2 cut(s)	153, 388
VpaK11BI	GGWCC	2 cut(s)	219, 362
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.