Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

2608428 .. 2611606

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1036300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGAGGAGGAAGGTCCTTATCAGCCTCTTCAAGGCGGGGACGCCATTTCTTCCGACGACACTCGCCTGAACCAGCTCGGTTACAAGCAAGAGCTCAGTCGTCACCTCTCGGCAATAGCCAATTTCTCGATGACTTTCTCCATCATATCGGTTCTGACCGGTCTGAACACAACGTACAGTATGGGCCTCAGATATGGTGGGCCCGTTACCATGGTCTACGGGTGGCCCGTAGTGGGCTTTCTCACACTTCTGGTGGGCCTGTCCATGGCCGAGATTTGCTCTGCTTTTCCAACTTCTGGTGGGCTCTACTTCTGGAGCGCCAAACTCGCTGGCAAACGATGGGGCGCTTTCGCTTCTTGGCTCACTGGCTGGTACGTTTTTTATTTTTTCTCTTTTGATTTTTTTTTTTTGTCAAAATATTTTTATTTGTTTCTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGAAGTATTAAATATAGCATTAGCATTTAGAATCAAATTATTTTGTTATTTAAGCGATTTTCTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015174 GO:0015175 GO:0015179 GO:0015180 GO:0015181 GO:0015185 GO:0015189 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015718 GO:0015800 GO:0015802 GO:0015804 GO:0015807 GO:0015808 GO:0015809 GO:0015812 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022858 GO:0031224 GO:0031226 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

5.3

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	43 - 154	8.6e-10	Amino acid permease
AA_permease	PF00324	54 - 142	6.3e-09	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	179, 377
AfiI	CCNNNNNNNGG	4 cut(s)	35, 236, 268, 299
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	2 cut(s)	79, 97
AluI	AGCT	2 cut(s)	79, 97
Alw21I	GWGCWC	1 cut(s)	99
AoxI	GGCC	5 cut(s)	187, 203, 227, 259, 270
ApaI	GGGCCC	1 cut(s)	207
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	323, 350
AspS9I	GGNCC	6 cut(s)	17, 187, 203, 204, 228, 259
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	207
BanII	GRGCYC	3 cut(s)	99, 207, 309
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	2 cut(s)	152, 336
BfoI	RGCGCY	2 cut(s)	324, 351
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	6 cut(s)	17, 187, 203, 204, 228, 259
BmiI	GGNNCC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	213, 267
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 236, 268, 299
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	213, 267
BseLI	CCNNNNNNNGG	4 cut(s)	35, 236, 268, 299
BseMII	CTCAG	2 cut(s)	112, 205
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	20, 23
BseSI	GKGCMC	1 cut(s)	207
BshFI	GGCC	5 cut(s)	189, 205, 229, 261, 272
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	35, 236, 268, 299
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	5 cut(s)	189, 205, 229, 261, 272
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	99, 207, 309
Bsp19I	CCATGG	2 cut(s)	213, 267
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	5 cut(s)	189, 205, 229, 261, 272
BspCNI	CTCAG	2 cut(s)	111, 204
BspLI	GGNNCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	213, 267
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	213, 267
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	98, 191
BstDSI	CCRYGG	2 cut(s)	213, 267
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstH2I	RGCGCY	2 cut(s)	324, 351
BstHHI	GCGC	2 cut(s)	323, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	207
BsuRI	GGCC	5 cut(s)	189, 205, 229, 261, 272
BtgI	CCRYGG	2 cut(s)	213, 267
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	2 cut(s)	323, 350
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	6 cut(s)	17, 187, 203, 204, 228, 259
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	178, 376
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	2 cut(s)	214, 268
CviQI	GTAC	2 cut(s)	178, 376
DdeI	CTNAG	2 cut(s)	98, 191
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	213, 267
Eco24I	GRGCYC	3 cut(s)	99, 207, 309
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	213, 267
EcoT38I	GRGCYC	3 cut(s)	99, 207, 309
ErhI	CCWWGG	2 cut(s)	213, 267
FaeI	CATG	2 cut(s)	217, 271
FaiI	YATR	7 cut(s)	149, 185, 198, 215, 269, 485, 538
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	213, 267
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	219
FriOI	GRGCYC	3 cut(s)	99, 207, 309
GlaI	GCGC	2 cut(s)	322, 349
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	2 cut(s)	324, 351
HaeIII	GGCC	5 cut(s)	189, 205, 229, 261, 272
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	2 cut(s)	323, 350
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	217, 271
Hin6I	GCGC	2 cut(s)	321, 348
HinP1I	GCGC	2 cut(s)	321, 348
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	58, 159, 168, 194, 438
Hpy188III	TCNNGA	2 cut(s)	130, 316
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	176, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	98, 191
HpySE526I	ACGT	2 cut(s)	176, 378
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	217, 271
HspAI	GCGC	2 cut(s)	321, 348
LmnI	GCTCC	1 cut(s)	318
MaeII	ACGT	2 cut(s)	176, 378
MaeIII	GTNAC	3 cut(s)	83, 104, 208
MboII	GAAGA	2 cut(s)	23, 45
MhlI	GDGCHC	3 cut(s)	99, 207, 309
MluCI	AATT	2 cut(s)	124, 506
MmeI	TCCRAC	2 cut(s)	81, 317
MnlI	CCTC	4 cut(s)	4, 39, 119, 200
MseI	TTAA	2 cut(s)	479, 521
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	329
NcoI	CCATGG	2 cut(s)	213, 267
NlaIII	CATG	2 cut(s)	217, 271
NlaIV	GGNNCC	1 cut(s)	205
NmeAIII	GCCGAG	2 cut(s)	92, 298
NmuCI	GTSAC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	205
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	6 cut(s)	17, 187, 203, 204, 228, 259
PspPPI	RGGWCCY	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
RsaI	GTAC	2 cut(s)	179, 377
RsaNI	GTAC	2 cut(s)	178, 376
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	479, 521
Sau96I	GGNCC	6 cut(s)	17, 187, 203, 204, 228, 259
SduI	GDGCHC	3 cut(s)	99, 207, 309
SetI	ASST	6 cut(s)	19, 81, 99, 111, 179, 381
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	124, 506
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	213, 267
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	179, 381
TaqI	TCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	124, 506
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	2 cut(s)	479, 521
Tru9I	TTAA	2 cut(s)	479, 521
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.