Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

55289699 .. 55291551

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTCAAATCAAGGATACCATGGAAGAGGAACATCATCACCCTCTTCTTCAAGAAGACGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCTGTCCTCACCGGTCTGAGCACGACGTTTGGTATTGGTCTCACATATGGTGGGACCATAACGATGGTGTACGGGTGGCCGGTGGTGGGGATGCTGACGCTGGTGGTGGGACTATCGATGGCTGAGATTTGCTCCGCGTACCCGACTTCCGGTGGTCTCTACTTCTGGAGTGCCAAACTCTCTGGCGATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGGCTTCGCTTTCGACACTCCTCTAGCCTTTTGAACCCGGCCCATCCAGCCCATAAGTTAACAAGATCCAACGGGCTAACCCGCTCCTACATCCCTGCCCAGAGTCCATATATGAAGTGGGTCTCAACAATTGTCAAGAAGTCCAGAACCAATAATGGGACTTTGACTAGCTTCTACAATAATGGTCCAAAACCAAATGATGACATATTTATTTACATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

9.19

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	48 - 129	3.1e-09	Amino acid permease
AA_permease	PF00324	59 - 128	4.8e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	471
AccII	CGCG	2 cut(s)	82, 302
AciI	CCGC	3 cut(s)	118, 300, 469
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	236, 305
AfiI	CCNNNNNNNGG	3 cut(s)	251, 314, 543
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	53, 88, 421
AluBI	AGCT	2 cut(s)	94, 558
AluI	AGCT	2 cut(s)	94, 558
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	4 cut(s)	169, 209, 326, 514
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	2 cut(s)	242, 426
ApoI	RAATTY	1 cut(s)	139
AsiGI	ACCGGT	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	4 cut(s)	219, 362, 427, 572
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	32, 166
AvaII	GGWCC	3 cut(s)	219, 362, 572
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	4 cut(s)	167, 223, 277, 438
BciVI	GTATCC	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	169, 209, 326, 514
BfaI	CTAG	2 cut(s)	411, 555
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	3 cut(s)	219, 362, 572
BmgT120I	GGNCC	4 cut(s)	219, 362, 427, 572
BmiI	GGNNCC	2 cut(s)	220, 363
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	3 cut(s)	209, 326, 514
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	176, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 314, 543
Bse118I	RCCGGY	2 cut(s)	176, 244
Bse1I	ACTGG	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	261, 430, 477
BseLI	CCNNNNNNNGG	3 cut(s)	251, 314, 543
BseMII	CTCAG	4 cut(s)	127, 159, 173, 279
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	82, 302
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	244, 428
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	177, 245, 315, 425
BslFI	GGGAC	4 cut(s)	232, 288, 375, 559
BslI	CCNNNNNNNGG	3 cut(s)	251, 314, 543
BsmAI	GTCTC	4 cut(s)	169, 209, 326, 514
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	4 cut(s)	232, 288, 375, 559
BsnI	GGCC	2 cut(s)	244, 428
Bso31I	GGTCTC	3 cut(s)	209, 326, 514
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	352, 452
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	118, 300, 469
BspANI	GGCC	2 cut(s)	244, 428
BspCNI	CTCAG	4 cut(s)	126, 158, 174, 280
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	82, 302
BspHI	TCATGA	1 cut(s)	608
BspLI	GGNNCC	2 cut(s)	220, 363
BspPI	GGATC	1 cut(s)	447
BspTNI	GGTCTC	3 cut(s)	209, 326, 514
BsrBI	CCGCTC	1 cut(s)	471
BsrFI	RCCGGY	2 cut(s)	176, 244
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	2 cut(s)	176, 244
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	352, 452
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	21, 51
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	4 cut(s)	113, 145, 182, 288
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	261, 430, 477
BstFNI	CGCG	2 cut(s)	82, 302
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	355, 455
BstMAI	GTCTC	4 cut(s)	169, 209, 326, 514
BstMBI	GATC	2 cut(s)	352, 452
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 434
BstSCI	CCNGG	1 cut(s)	423
BstUI	CGCG	2 cut(s)	82, 302
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	244, 428
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	261, 430, 477
BtsIMutI	CAGTG	2 cut(s)	153, 381
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	608
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	2 cut(s)	176, 244
Cfr13I	GGNCC	4 cut(s)	219, 362, 427, 572
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	2 cut(s)	68, 271
Csp6I	GTAC	2 cut(s)	235, 304
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	2 cut(s)	22, 609
CviQI	GTAC	2 cut(s)	235, 304
DdeI	CTNAG	4 cut(s)	113, 145, 182, 288
DpnI	GATC	2 cut(s)	354, 454
DpnII	GATC	2 cut(s)	352, 452
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	2 cut(s)	21, 51
EarI	CTCTTC	2 cut(s)	21, 51
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	3 cut(s)	209, 326, 514
Eco47I	GGWCC	3 cut(s)	219, 362, 572
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	25, 612
FaqI	GGGAC	4 cut(s)	232, 288, 375, 559
FatI	CATG	2 cut(s)	21, 608
FauI	CCCGC	1 cut(s)	476
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	3 cut(s)	268, 417, 464
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	2 cut(s)	411, 555
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	244, 428
HapII	CCGG	4 cut(s)	177, 245, 315, 425
HgaI	GACGC	2 cut(s)	68, 271
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	25, 612
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	3 cut(s)	4, 77, 490
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	4 cut(s)	177, 245, 315, 425
HphI	GGTGA	2 cut(s)	32, 166
Hpy166II	GTNNAC	2 cut(s)	235, 447
Hpy188I	TCNGA	2 cut(s)	73, 183
Hpy188III	TCNNGA	5 cut(s)	53, 331, 523, 531, 609
Hpy8I	GTNNAC	2 cut(s)	235, 447
Hpy99I	CGWCG	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 434
HpyF3I	CTNAG	4 cut(s)	113, 145, 182, 288
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	25, 612
HspAI	GCGC	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	352, 452
LmnI	GCTCC	2 cut(s)	302, 476
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	411, 555
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	98, 148
MalI	GATC	2 cut(s)	354, 454
MbiI	CCGCTC	1 cut(s)	471
MboI	GATC	2 cut(s)	352, 452
MboII	GAAGA	5 cut(s)	38, 38, 41, 60, 68
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	139, 516
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	4 cut(s)	22, 54, 182, 418
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	4 cut(s)	177, 245, 315, 425
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	516
MvnI	CGCG	2 cut(s)	82, 302
MwoI	GCNNNNNNNGC	2 cut(s)	393, 434
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	352, 452
NlaIII	CATG	2 cut(s)	25, 612
NlaIV	GGNNCC	2 cut(s)	220, 363
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	119
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	220, 363
PspPI	GGNCC	4 cut(s)	219, 362, 427, 572
PspPPI	RGGWCCY	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	452
PvuI	CGATCG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	236, 305
RsaNI	GTAC	2 cut(s)	235, 304
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	352, 452
Sau96I	GGNCC	4 cut(s)	219, 362, 427, 572
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	96, 194, 367, 560
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	3 cut(s)	219, 362, 572
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	139, 516
SsiI	CCGC	3 cut(s)	118, 300, 469
SspMI	CTAG	2 cut(s)	411, 555
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	281, 400
TasI	AATT	2 cut(s)	139, 516
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	153, 388
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	515, 597
TspRI	CASTG	2 cut(s)	153, 388
VpaK11BI	GGWCC	3 cut(s)	219, 362, 572
XapI	RAATTY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XspI	CTAG	2 cut(s)	411, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.