Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

66513492 .. 66525684

Gene Structure 12193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG476100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGACAGAACCAAGTAGATGCATCACAAATCCAAGAGATGGATTCAGGGGAAAAGCGACTTAATGAGCTTGGTTACAAGCAAGAACTCAGAAGAGAGATGACTTTGTTCAAAACTCTTGCAATATCATTCTCGACGATGACACTCTTCACCAGAATCACTCCTTTGTATGGTTCTAGCCTTGGAAAGGATCGATATCCTGGAAATCAACCATCCCGAAAGTCCTGTCGGCACAAAGTCCAGAGTGATATGAAATTTTATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

88

Amino Acids

10.25

Weight (kDa)

9.61

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	40, 170, 187
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AsuHPI	GGTGA	1 cut(s)	142
BccI	CCATC	2 cut(s)	34, 220
BciT130I	CCWGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	10, 32
Bsa29I	ATCGAT	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 170, 187
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	212
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	40, 170, 187
BseMII	CTCAG	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	40, 170, 187
BsmFI	GGGAC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	193
BspPI	GGATC	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	88, 152
BstDEI	CTNAG	1 cut(s)	89
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	193
CviJI	RGCY	2 cut(s)	70, 180
CviKI_1	RGCY	2 cut(s)	70, 180
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	88, 152
EarI	CTCTTC	2 cut(s)	88, 152
Eco130I	CCWWGG	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	2 cut(s)	171, 251
FaqI	GGGAC	1 cut(s)	18
FokI	GGATG	1 cut(s)	199
FspBI	CTAG	1 cut(s)	177
HinfI	GANTC	2 cut(s)	44, 156
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	3 cut(s)	133, 216, 241
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	23, 122
HpyF3I	CTNAG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	33, 166, 186, 213, 238, 254
LweI	GCATC	2 cut(s)	10, 32
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	105, 139
MluCI	AATT	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	2 cut(s)	63, 265
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	44, 156
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	63, 265
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	1 cut(s)	72
SfaNI	GCATC	2 cut(s)	10, 32
Sse9I	AATT	1 cut(s)	254
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	2 cut(s)	134, 193
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	44, 156
Tru1I	TTAA	2 cut(s)	63, 265
Tru9I	TTAA	2 cut(s)	63, 265
TspDTI	ATGAA	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.