Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

9925879 .. 9937477

Gene Structure 11599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTTGATTTGTTTCAGACTTTGTTCAAAACTCTTGCAATATCATTCTCGACGATGACACTCTTCACCGGAATCACTCCTTTGTATGGTTCTAGCCTTGTATATGCAGGTCCTGCAAGCCTTGTGTGGGGTTGGGTGGTAGTATCATTTTTCACCTGGTTTGTTGGACTTGCTATGCTTGAATATGTGACTCAAAGATCATCAACAAAGAAAATGCGAGGGGGAATTAGGGAGGAAGACGAGGATGAGGAAGAGAAGTATAGGGCTGGTGAATGGGAGCATAAGCATGGAGCACCAGCTTCACGCTTTGGTTATGAACAAGTGCATCAAGATCGTTATTGGTTCCGGTTGAGCCTGCCGGCGTCGGTGGACAACTCAGTGTTGTGCTGCTTGTTGATTGACATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCGAAATCAGGGTCTATTGCCGGTGCTTTGTTTCCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

159

Amino Acids

18.2

Weight (kDa)

6.06

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	86, 127, 445
AgsI	TTSAA	2 cut(s)	28, 182
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	387
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	58, 145, 281
AvaII	GGWCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	68, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 127, 445
Bse118I	RCCGGY	2 cut(s)	358, 457
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	3 cut(s)	86, 127, 445
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	4 cut(s)	69, 346, 359, 458
BslI	CCNNNNNNNGG	3 cut(s)	86, 127, 445
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	197, 331
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	358, 457
BssAI	RCCGGY	2 cut(s)	358, 457
BssMI	GATC	2 cut(s)	197, 331
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	68, 246
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	118, 356, 360
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	200, 334
BstMBI	GATC	2 cut(s)	197, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	118, 356, 360
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr10I	RCCGGY	2 cut(s)	358, 457
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	351
CsiI	ACCWGGT	1 cut(s)	155
CviAII	CATG	2 cut(s)	287, 477
CviJI	RGCY	5 cut(s)	96, 120, 266, 299, 354
CviKI_1	RGCY	5 cut(s)	96, 120, 266, 299, 354
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	2 cut(s)	199, 333
DpnII	GATC	2 cut(s)	197, 331
Eam1104I	CTCTTC	2 cut(s)	68, 246
EarI	CTCTTC	2 cut(s)	68, 246
Eco47I	GGWCC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	290, 480
FatI	CATG	2 cut(s)	286, 476
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	388
HapII	CCGG	4 cut(s)	69, 346, 359, 458
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	290, 480
HinfI	GANTC	2 cut(s)	72, 190
HpaII	CCGG	4 cut(s)	69, 346, 359, 458
HphI	GGTGA	3 cut(s)	58, 145, 281
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	18, 410, 440
Hpy188III	TCNNGA	2 cut(s)	49, 329
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	2 cut(s)	55, 367
HpyCH4V	TGCA	4 cut(s)	38, 107, 116, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	290, 480
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	197, 331
LmnI	GCTCC	2 cut(s)	277, 290
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	155
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	199, 333
MboI	GATC	2 cut(s)	197, 331
MboII	GAAGA	4 cut(s)	55, 248, 263, 397
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	212, 226, 235, 241
MroNI	GCCGGC	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	4 cut(s)	69, 346, 359, 458
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	113
NaeI	GCCGGC	1 cut(s)	360
NdeII	GATC	2 cut(s)	197, 331
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	290, 480
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	197, 331
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	3 cut(s)	112, 158, 301
SexAI	ACCWGGT	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	334
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	50
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.