amino-acid permease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01170 AT2G01170 |
| fragaria_vesca | FvH4_4g26580 FvH4_4g26581 |
| malus_domestica | MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1 |
| prunus_persica | Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 |
| pyrus_communis | pycom16g03100 pycom16g03110 |
| rosa_chinensis | RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741 |
| rosa_laevigata | RLG00000006690 |
| rosa_multiflora | Rmu_sc0000459.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00375610 Rroxscaffold_5G00375620 |
| rosa_rugosa | Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600 |
| rosa_samantha | Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100 |
| rosa_wichuraiana | Rw4G028650 Rw4G028660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 317 |
| AccI | GTMKAC | 1 cut(s) | 779 |
| AclWI | GGATC | 2 cut(s) | 917, 1535 |
| AcoI | YGGCCR | 1 cut(s) | 76 |
| AcsI | RAATTY | 2 cut(s) | 142, 543 |
| AfaI | GTAC | 2 cut(s) | 587, 1292 |
| AfeI | AGCGCT | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 317, 361 |
| AgeI | ACCGGT | 1 cut(s) | 179 |
| AgsI | TTSAA | 6 cut(s) | 141, 162, 397, 709, 1003, 1363 |
| AjnI | CCWGG | 3 cut(s) | 993, 1041, 1100 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 680, 712 |
| AluBI | AGCT | 8 cut(s) | 115, 254, 346, 451, 477, 607, 611, 1523 |
| AluI | AGCT | 8 cut(s) | 115, 254, 346, 451, 477, 607, 611, 1523 |
| Alw21I | GWGCWC | 2 cut(s) | 117, 1540 |
| Alw26I | GTCTC | 3 cut(s) | 92, 944, 1460 |
| AlwI | GGATC | 2 cut(s) | 917, 1535 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 230 |
| Ama87I | CYCGRG | 1 cut(s) | 905 |
| Aor51HI | AGCGCT | 1 cut(s) | 61 |
| AoxI | GGCC | 2 cut(s) | 76, 352 |
| ApeKI | GCWGC | 4 cut(s) | 57, 133, 611, 614 |
| ApoI | RAATTY | 2 cut(s) | 142, 543 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1332, 1364 |
| AsiGI | ACCGGT | 1 cut(s) | 179 |
| AspLEI | GCGC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 8 cut(s) | 46, 221, 353, 845, 1355, 1381, 1426, 1556 |
| AsuHPI | GGTGA | 5 cut(s) | 29, 256, 506, 904, 1336 |
| AsuNHI | GCTAGC | 1 cut(s) | 607 |
| AvaI | CYCGRG | 1 cut(s) | 905 |
| AvaII | GGWCC | 7 cut(s) | 46, 221, 845, 1355, 1381, 1426, 1556 |
| BaeGI | GKGCMC | 1 cut(s) | 367 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BbsI | GAAGAC | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 2 cut(s) | 117, 1540 |
| BbvI | GCAGC | 4 cut(s) | 69, 120, 598, 601 |
| BceAI | ACGGC | 1 cut(s) | 70 |
| BciT130I | CCWGG | 3 cut(s) | 995, 1043, 1102 |
| BciVI | GTATCC | 1 cut(s) | 542 |
| BclI | TGATCA | 1 cut(s) | 462 |
| BcoDI | GTCTC | 3 cut(s) | 92, 944, 1460 |
| BfaI | CTAG | 3 cut(s) | 608, 1092, 1122 |
| BfmI | CTRYAG | 1 cut(s) | 1272 |
| BfoI | RGCGCY | 1 cut(s) | 63 |
| BfuI | GTATCC | 1 cut(s) | 542 |
| BisI | GCNGC | 4 cut(s) | 58, 134, 612, 615 |
| BlsI | GCNGC | 4 cut(s) | 59, 135, 613, 616 |
| Bme1390I | CCNGG | 3 cut(s) | 995, 1043, 1102 |
| Bme18I | GGWCC | 7 cut(s) | 46, 221, 845, 1355, 1381, 1426, 1556 |
| BmeT110I | CYCGRG | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 8 cut(s) | 46, 221, 353, 845, 1355, 1381, 1426, 1556 |
| BmiI | GGNNCC | 4 cut(s) | 48, 366, 1132, 1382 |
| BmrFI | CCNGG | 3 cut(s) | 995, 1043, 1102 |
| BmrI | ACTGGG | 1 cut(s) | 1175 |
| BmsI | GCATC | 3 cut(s) | 787, 809, 949 |
| BmtI | GCTAGC | 1 cut(s) | 611 |
| BmuI | ACTGGG | 1 cut(s) | 1175 |
| BpiI | GAAGAC | 1 cut(s) | 566 |
| BpmI | CTGGAG | 1 cut(s) | 1084 |
| Bpu10I | CCTNAGC | 2 cut(s) | 473, 478 |
| BpuEI | CTTGAG | 2 cut(s) | 101, 1339 |
| BsaJI | CCNNGG | 6 cut(s) | 285, 535, 1042, 1206, 1263, 1329 |
| BsaWI | WCCGGW | 1 cut(s) | 179 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 317, 361 |
| Bse118I | RCCGGY | 1 cut(s) | 179 |
| Bse1I | ACTGG | 6 cut(s) | 208, 224, 391, 793, 1181, 1550 |
| Bse3DI | GCAATG | 2 cut(s) | 975, 1293 |
| BseBI | CCWGG | 3 cut(s) | 995, 1043, 1102 |
| BseDI | CCNNGG | 6 cut(s) | 285, 535, 1042, 1206, 1263, 1329 |
| BseGI | GGATG | 6 cut(s) | 248, 730, 896, 930, 952, 1110 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 317, 361 |
| BseMI | GCAATG | 2 cut(s) | 975, 1293 |
| BseMII | CTCAG | 2 cut(s) | 282, 492 |
| BseNI | ACTGG | 6 cut(s) | 208, 224, 391, 793, 1181, 1550 |
| BseSI | GKGCMC | 1 cut(s) | 367 |
| BseXI | GCAGC | 4 cut(s) | 69, 120, 598, 601 |
| BshFI | GGCC | 2 cut(s) | 78, 354 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BshTI | ACCGGT | 1 cut(s) | 179 |
| BsiHKAI | GWGCWC | 2 cut(s) | 117, 1540 |
| BsiHKCI | CYCGRG | 1 cut(s) | 905 |
| BsiSI | CCGG | 2 cut(s) | 75, 180 |
| BslFI | GGGAC | 4 cut(s) | 32, 774, 1163, 1383 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 317, 361 |
| BsmAI | GTCTC | 3 cut(s) | 92, 944, 1460 |
| BsmBI | CGTCTC | 1 cut(s) | 92 |
| BsmFI | GGGAC | 4 cut(s) | 32, 774, 1163, 1383 |
| BsmI | GAATGC | 3 cut(s) | 835, 998, 1115 |
| BsnI | GGCC | 2 cut(s) | 78, 354 |
| BsoBI | CYCGRG | 1 cut(s) | 905 |
| Bsp1286I | GDGCHC | 3 cut(s) | 117, 367, 1540 |
| Bsp1407I | TGTACA | 1 cut(s) | 1290 |
| Bsp143I | GATC | 3 cut(s) | 462, 909, 1527 |
| Bsp19I | CCATGG | 3 cut(s) | 285, 535, 1263 |
| BspANI | GGCC | 2 cut(s) | 78, 354 |
| BspCNI | CTCAG | 2 cut(s) | 283, 491 |
| BspLI | GGNNCC | 4 cut(s) | 48, 366, 1132, 1382 |
| BspOI | GCTAGC | 1 cut(s) | 611 |
| BspPI | GGATC | 2 cut(s) | 917, 1535 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BsrDI | GCAATG | 2 cut(s) | 975, 1293 |
| BsrFI | RCCGGY | 1 cut(s) | 179 |
| BsrGI | TGTACA | 1 cut(s) | 1290 |
| BsrI | ACTGG | 6 cut(s) | 208, 224, 391, 793, 1181, 1550 |
| BssAI | RCCGGY | 1 cut(s) | 179 |
| BssECI | CCNNGG | 6 cut(s) | 285, 535, 1042, 1206, 1263, 1329 |
| BssMI | GATC | 3 cut(s) | 462, 909, 1527 |
| BssNAI | GTATAC | 1 cut(s) | 780 |
| BssT1I | CCWWGG | 5 cut(s) | 285, 535, 1206, 1263, 1329 |
| Bst1107I | GTATAC | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 3 cut(s) | 995, 1043, 1102 |
| Bst4CI | ACNGT | 5 cut(s) | 218, 572, 1290, 1426, 1516 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 371, 1259 |
| BstAUI | TGTACA | 1 cut(s) | 1290 |
| BstC8I | GCNNGC | 5 cut(s) | 348, 352, 609, 1336, 1536 |
| BstDEI | CTNAG | 3 cut(s) | 291, 473, 478 |
| BstDSI | CCRYGG | 3 cut(s) | 285, 535, 1263 |
| BstEII | GGTNACC | 1 cut(s) | 1324 |
| BstF5I | GGATG | 6 cut(s) | 248, 730, 896, 930, 952, 1110 |
| BstH2I | RGCGCY | 1 cut(s) | 63 |
| BstHHI | GCGC | 1 cut(s) | 62 |
| BstKTI | GATC | 3 cut(s) | 465, 912, 1530 |
| BstMAI | GTCTC | 3 cut(s) | 92, 944, 1460 |
| BstMBI | GATC | 3 cut(s) | 462, 909, 1527 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 347, 371, 1259, 1540 |
| BstNI | CCWGG | 3 cut(s) | 995, 1043, 1102 |
| BstNSI | RCATGY | 1 cut(s) | 560 |
| BstPI | GGTNACC | 1 cut(s) | 1324 |
| BstSCI | CCNGG | 3 cut(s) | 993, 1041, 1100 |
| BstSFI | CTRYAG | 1 cut(s) | 1272 |
| BstSLI | GKGCMC | 1 cut(s) | 367 |
| BstV1I | GCAGC | 4 cut(s) | 69, 120, 598, 601 |
| BstV2I | GAAGAC | 1 cut(s) | 566 |
| BstX2I | RGATCY | 1 cut(s) | 1527 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 98 |
| BstYI | RGATCY | 1 cut(s) | 1527 |
| BstZ17I | GTATAC | 1 cut(s) | 780 |
| BsuI | GTATCC | 1 cut(s) | 542 |
| BsuRI | GGCC | 2 cut(s) | 78, 354 |
| BtgI | CCRYGG | 3 cut(s) | 285, 535, 1263 |
| BtsCI | GGATG | 6 cut(s) | 248, 730, 896, 930, 952, 1110 |
| BtsI | GCAGTG | 2 cut(s) | 29, 1024 |
| BtsIMutI | CAGTG | 9 cut(s) | 29, 201, 384, 416, 711, 1024, 1226, 1407, 1543 |
| Cac8I | GCNNGC | 5 cut(s) | 348, 352, 609, 1336, 1536 |
| CaiI | CAGNNNCTG | 1 cut(s) | 230 |
| CfoI | GCGC | 1 cut(s) | 62 |
| Cfr10I | RCCGGY | 1 cut(s) | 179 |
| Cfr13I | GGNCC | 8 cut(s) | 46, 221, 353, 845, 1355, 1381, 1426, 1556 |
| CseI | GACGC | 1 cut(s) | 1380 |
| Csp6I | GTAC | 2 cut(s) | 586, 1291 |
| CspAI | ACCGGT | 1 cut(s) | 179 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 199, 234, 411, 446 |
| CviQI | GTAC | 2 cut(s) | 586, 1291 |
| DdeI | CTNAG | 3 cut(s) | 291, 473, 478 |
| DpnI | GATC | 3 cut(s) | 464, 911, 1529 |
| DpnII | GATC | 3 cut(s) | 462, 909, 1527 |
| DraI | TTTAAA | 1 cut(s) | 1552 |
| EaeI | YGGCCR | 1 cut(s) | 76 |
| Ecl136II | GAGCTC | 1 cut(s) | 115 |
| Eco130I | CCWWGG | 5 cut(s) | 285, 535, 1206, 1263, 1329 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco32I | GATATC | 1 cut(s) | 876 |
| Eco47I | GGWCC | 7 cut(s) | 46, 221, 845, 1355, 1381, 1426, 1556 |
| Eco47III | AGCGCT | 1 cut(s) | 61 |
| Eco53kI | GAGCTC | 1 cut(s) | 115 |
| Eco88I | CYCGRG | 1 cut(s) | 905 |
| Eco91I | GGTNACC | 1 cut(s) | 1324 |
| EcoICRI | GAGCTC | 1 cut(s) | 115 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1355, 1381, 1556 |
| EcoO65I | GGTNACC | 1 cut(s) | 1324 |
| EcoRII | CCWGG | 3 cut(s) | 993, 1041, 1100 |
| EcoRV | GATATC | 1 cut(s) | 876 |
| EcoT14I | CCWWGG | 5 cut(s) | 285, 535, 1206, 1263, 1329 |
| EcoT22I | ATGCAT | 2 cut(s) | 802, 1117 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| ErhI | CCWWGG | 5 cut(s) | 285, 535, 1206, 1263, 1329 |
| Esp3I | CGTCTC | 1 cut(s) | 92 |
| FaqI | GGGAC | 4 cut(s) | 32, 774, 1163, 1383 |
| FauNDI | CATATG | 1 cut(s) | 810 |
| FbaI | TGATCA | 1 cut(s) | 462 |
| FblI | GTMKAC | 1 cut(s) | 779 |
| Fnu4HI | GCNGC | 4 cut(s) | 58, 134, 612, 615 |
| FokI | GGATG | 6 cut(s) | 255, 737, 903, 917, 959, 1117 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 4 cut(s) | 58, 134, 612, 615 |
| FspBI | CTAG | 3 cut(s) | 608, 1092, 1122 |
| GlaI | GCGC | 1 cut(s) | 61 |
| GluI | GCNGC | 4 cut(s) | 58, 134, 612, 615 |
| GsuI | CTGGAG | 1 cut(s) | 1084 |
| HaeII | RGCGCY | 1 cut(s) | 63 |
| HaeIII | GGCC | 2 cut(s) | 78, 354 |
| HapII | CCGG | 2 cut(s) | 75, 180 |
| HgaI | GACGC | 1 cut(s) | 1380 |
| HhaI | GCGC | 1 cut(s) | 62 |
| Hin6I | GCGC | 1 cut(s) | 60 |
| HinP1I | GCGC | 1 cut(s) | 60 |
| HincII | GTYRAC | 1 cut(s) | 733 |
| HindII | GTYRAC | 1 cut(s) | 733 |
| HindIII | AAGCTT | 1 cut(s) | 344 |
| HinfI | GANTC | 7 cut(s) | 71, 207, 649, 729, 762, 772, 1047 |
| HpaII | CCGG | 2 cut(s) | 75, 180 |
| HphI | GGTGA | 5 cut(s) | 29, 256, 506, 904, 1336 |
| Hpy166II | GTNNAC | 5 cut(s) | 699, 733, 745, 780, 1186 |
| Hpy188I | TCNGA | 1 cut(s) | 10 |
| Hpy188III | TCNNGA | 6 cut(s) | 507, 871, 907, 1003, 1122, 1318 |
| Hpy8I | GTNNAC | 5 cut(s) | 699, 733, 745, 780, 1186 |
| HpyCH4III | ACNGT | 5 cut(s) | 218, 572, 1290, 1426, 1516 |
| HpyCH4IV | ACGT | 1 cut(s) | 459 |
| HpyCH4V | TGCA | 7 cut(s) | 446, 617, 668, 800, 1115, 1221, 1490 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 347, 371, 1259, 1540 |
| HpyF3I | CTNAG | 3 cut(s) | 291, 473, 478 |
| HpySE526I | ACGT | 1 cut(s) | 459 |
| HspAI | GCGC | 1 cut(s) | 60 |
| Ksp22I | TGATCA | 1 cut(s) | 462 |
| Kzo9I | GATC | 3 cut(s) | 462, 909, 1527 |
| LmnI | GCTCC | 1 cut(s) | 1130 |
| Lsp1109I | GCAGC | 4 cut(s) | 69, 120, 598, 601 |
| LweI | GCATC | 3 cut(s) | 787, 809, 949 |
| MaeI | CTAG | 3 cut(s) | 608, 1092, 1122 |
| MaeII | ACGT | 1 cut(s) | 459 |
| MaeIII | GTNAC | 8 cut(s) | 17, 122, 184, 418, 922, 1087, 1324, 1503 |
| MalI | GATC | 3 cut(s) | 464, 911, 1529 |
| MboI | GATC | 3 cut(s) | 462, 909, 1527 |
| MboII | GAAGA | 6 cut(s) | 294, 498, 566, 830, 1060, 1306 |
| MflI | RGATCY | 1 cut(s) | 1527 |
| MhlI | GDGCHC | 3 cut(s) | 117, 367, 1540 |
| MluCI | AATT | 5 cut(s) | 142, 543, 858, 1032, 1455 |
| MlyI | GAGTC | 6 cut(s) | 65, 201, 738, 756, 781, 1056 |
| MmeI | TCCRAC | 3 cut(s) | 868, 1006, 1373 |
| MnlI | CCTC | 6 cut(s) | 137, 533, 669, 1022, 1314, 1439 |
| Mph1103I | ATGCAT | 2 cut(s) | 802, 1117 |
| MseI | TTAA | 4 cut(s) | 456, 767, 1257, 1551 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 451 |
| MspI | CCGG | 2 cut(s) | 75, 180 |
| MspR9I | CCNGG | 3 cut(s) | 995, 1043, 1102 |
| Mva1269I | GAATGC | 3 cut(s) | 835, 998, 1115 |
| MvaI | CCWGG | 3 cut(s) | 995, 1043, 1102 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 347, 371, 1259, 1540 |
| NcoI | CCATGG | 3 cut(s) | 285, 535, 1263 |
| NdeI | CATATG | 1 cut(s) | 810 |
| NdeII | GATC | 3 cut(s) | 462, 909, 1527 |
| NheI | GCTAGC | 1 cut(s) | 607 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 366, 1132, 1382 |
| NmeAIII | GCCGAG | 1 cut(s) | 1519 |
| NmuCI | GTSAC | 5 cut(s) | 17, 122, 184, 418, 1324 |
| NsiI | ATGCAT | 2 cut(s) | 802, 1117 |
| NspI | RCATGY | 1 cut(s) | 560 |
| PctI | GAATGC | 3 cut(s) | 835, 998, 1115 |
| PfeI | GAWTC | 1 cut(s) | 649 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 317 |
| PfoI | TCCNGGA | 1 cut(s) | 1100 |
| PinAI | ACCGGT | 1 cut(s) | 179 |
| PkrI | GCNGC | 4 cut(s) | 59, 135, 613, 616 |
| PleI | GAGTC | 6 cut(s) | 65, 201, 737, 756, 780, 1055 |
| PpsI | GAGTC | 6 cut(s) | 65, 201, 737, 756, 780, 1055 |
| PpuMI | RGGWCCY | 3 cut(s) | 1355, 1381, 1556 |
| Psp124BI | GAGCTC | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 3 cut(s) | 1355, 1381, 1556 |
| Psp6I | CCWGG | 3 cut(s) | 993, 1041, 1100 |
| PspEI | GGTNACC | 1 cut(s) | 1324 |
| PspGI | CCWGG | 3 cut(s) | 993, 1041, 1100 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 366, 1132, 1382 |
| PspPI | GGNCC | 8 cut(s) | 46, 221, 353, 845, 1355, 1381, 1426, 1556 |
| PspPPI | RGGWCCY | 3 cut(s) | 1355, 1381, 1556 |
| PstNI | CAGNNNCTG | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 1527 |
| PvuII | CAGCTG | 1 cut(s) | 451 |
| RsaI | GTAC | 2 cut(s) | 587, 1292 |
| RsaNI | GTAC | 2 cut(s) | 586, 1291 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SacI | GAGCTC | 1 cut(s) | 117 |
| SaqAI | TTAA | 4 cut(s) | 456, 767, 1257, 1551 |
| SatI | GCNGC | 4 cut(s) | 58, 134, 612, 615 |
| Sau3AI | GATC | 3 cut(s) | 462, 909, 1527 |
| Sau96I | GGNCC | 8 cut(s) | 46, 221, 353, 845, 1355, 1381, 1426, 1556 |
| SchI | GAGTC | 6 cut(s) | 65, 201, 738, 756, 781, 1056 |
| ScrFI | CCNGG | 3 cut(s) | 995, 1043, 1102 |
| SduI | GDGCHC | 3 cut(s) | 117, 367, 1540 |
| SfaNI | GCATC | 3 cut(s) | 787, 809, 949 |
| SfcI | CTRYAG | 1 cut(s) | 1272 |
| SinI | GGWCC | 7 cut(s) | 46, 221, 845, 1355, 1381, 1426, 1556 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| SmlI | CTYRAG | 2 cut(s) | 116, 1318 |
| SmoI | CTYRAG | 2 cut(s) | 116, 1318 |
| Sse9I | AATT | 5 cut(s) | 142, 543, 858, 1032, 1455 |
| SspI | AATATT | 2 cut(s) | 625, 987 |
| SspMI | CTAG | 3 cut(s) | 608, 1092, 1122 |
| SstI | GAGCTC | 1 cut(s) | 117 |
| StyD4I | CCNGG | 3 cut(s) | 993, 1041, 1100 |
| StyI | CCWWGG | 5 cut(s) | 285, 535, 1206, 1263, 1329 |
| TaaI | ACNGT | 5 cut(s) | 218, 572, 1290, 1426, 1516 |
| TaiI | ACGT | 1 cut(s) | 462 |
| TasI | AATT | 5 cut(s) | 142, 543, 858, 1032, 1455 |
| TatI | WGTACW | 1 cut(s) | 1290 |
| TfiI | GAWTC | 1 cut(s) | 649 |
| Tru1I | TTAA | 4 cut(s) | 456, 767, 1257, 1551 |
| Tru9I | TTAA | 4 cut(s) | 456, 767, 1257, 1551 |
| TscAI | CASTG | 9 cut(s) | 36, 208, 391, 416, 718, 1024, 1233, 1407, 1550 |
| TseFI | GTSAC | 5 cut(s) | 17, 122, 184, 418, 1324 |
| TseI | GCWGC | 4 cut(s) | 57, 133, 611, 614 |
| Tsp45I | GTSAC | 5 cut(s) | 17, 122, 184, 418, 1324 |
| TspDTI | ATGAA | 4 cut(s) | 108, 144, 1134, 1188 |
| TspGWI | ACGGA | 1 cut(s) | 686 |
| TspRI | CASTG | 9 cut(s) | 36, 208, 391, 416, 718, 1024, 1233, 1407, 1550 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 317 |
| VpaK11BI | GGWCC | 7 cut(s) | 46, 221, 845, 1355, 1381, 1426, 1556 |
| XapI | RAATTY | 2 cut(s) | 142, 543 |
| XbaI | TCTAGA | 1 cut(s) | 1121 |
| XceI | RCATGY | 1 cut(s) | 560 |
| XmiI | GTMKAC | 1 cut(s) | 779 |
| XspI | CTAG | 3 cut(s) | 608, 1092, 1122 |
| Zsp2I | ATGCAT | 2 cut(s) | 802, 1117 |