Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

64075808 .. 64076923

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGACGAGGAACATCATCACCCTCTTCTTCAAGAAGACGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCTGTCCTCACCGGTCTGAGCACGACGTTTGGTATTGGTCTCACATATGGTGGGACCATAACGATGGTGTACGGGTGGCCGGTGGTGGGGATGCTGACGCTGGTGGTGGGACTATCGATGGCTGAGATTTGCTCCGCGTACCCGACTTCCGGTGGTCTCTACTTCTGGAGTGCCAAACTCTCTGGCGATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

124

Amino Acids

13.48

Weight (kDa)

5.1

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	41 - 121	3.5e-09	Amino acid permease
AA_permease	PF00324	52 - 120	4.5e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	61, 281
AciI	CCGC	2 cut(s)	97, 279
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	215, 284
AfiI	CCNNNNNNNGG	2 cut(s)	230, 293
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	32, 67
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	3 cut(s)	148, 188, 305
AoxI	GGCC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	118
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	198, 341
AsuHPI	GGTGA	2 cut(s)	11, 145
AvaII	GGWCC	2 cut(s)	198, 341
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	3 cut(s)	146, 202, 256
BcoDI	GTCTC	3 cut(s)	148, 188, 305
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme18I	GGWCC	2 cut(s)	198, 341
BmgT120I	GGNCC	2 cut(s)	198, 341
BmiI	GGNNCC	2 cut(s)	199, 342
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	188, 305
BsaWI	WCCGGW	2 cut(s)	155, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 293
Bse118I	RCCGGY	2 cut(s)	155, 223
Bse1I	ACTGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	260
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	230, 293
BseMII	CTCAG	4 cut(s)	106, 138, 152, 258
BseNI	ACTGG	1 cut(s)	367
Bsh1236I	CGCG	2 cut(s)	61, 281
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	156, 224, 294
BslFI	GGGAC	3 cut(s)	211, 267, 354
BslI	CCNNNNNNNGG	2 cut(s)	230, 293
BsmAI	GTCTC	3 cut(s)	148, 188, 305
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	3 cut(s)	211, 267, 354
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	2 cut(s)	188, 305
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	97, 279
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	4 cut(s)	105, 137, 153, 259
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	61, 281
BspLI	GGNNCC	2 cut(s)	199, 342
BspTNI	GGTCTC	2 cut(s)	188, 305
BsrFI	RCCGGY	2 cut(s)	155, 223
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	2 cut(s)	155, 223
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	4 cut(s)	92, 124, 161, 267
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	2 cut(s)	61, 281
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	148, 188, 305
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	334
BstUI	CGCG	2 cut(s)	61, 281
BstV2I	GAAGAC	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	132, 360
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	2 cut(s)	155, 223
Cfr13I	GGNCC	2 cut(s)	198, 341
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	2 cut(s)	47, 250
Csp6I	GTAC	2 cut(s)	214, 283
CspAI	ACCGGT	1 cut(s)	155
CviJI	RGCY	8 cut(s)	73, 96, 223, 266, 350, 358, 366, 370
CviKI_1	RGCY	8 cut(s)	73, 96, 223, 266, 350, 358, 366, 370
CviQI	GTAC	2 cut(s)	214, 283
DdeI	CTNAG	4 cut(s)	92, 124, 161, 267
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	188, 305
Eco47I	GGWCC	2 cut(s)	198, 341
EcoO109I	RGGNCCY	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	148
FaiI	YATR	3 cut(s)	190, 192, 203
FaqI	GGGAC	3 cut(s)	211, 267, 354
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	156, 224, 294
HgaI	GACGC	2 cut(s)	47, 250
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	3 cut(s)	156, 224, 294
HphI	GGTGA	2 cut(s)	11, 145
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	52, 162
Hpy188III	TCNNGA	2 cut(s)	32, 310
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	92, 124, 161, 267
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	8 cut(s)	169, 230, 237, 295, 307, 312, 348, 352
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	77, 127
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	17, 20, 39, 47
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	2 cut(s)	33, 161
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	3 cut(s)	156, 224, 294
MvnI	CGCG	2 cut(s)	61, 281
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	199, 342
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	98
Ple19I	CGATCG	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	199, 342
PspPI	GGNCC	2 cut(s)	198, 341
PspPPI	RGGWCCY	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	215, 284
RsaNI	GTAC	2 cut(s)	214, 283
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	198, 341
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	3 cut(s)	75, 173, 346
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	2 cut(s)	198, 341
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	97, 279
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TscAI	CASTG	2 cut(s)	132, 367
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	2 cut(s)	132, 367
VpaK11BI	GGWCC	2 cut(s)	198, 341
XapI	RAATTY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.