Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

55654790 .. 55657759

Gene Structure 2970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGAGTCTGGTGGCGGCACAATGGCAGCCAACGGCGACGTTTCCAAGGATTCCGGCCACGAACGTCTTAATCAGCTCGGCTACAAACAAGAGCTCAAGCGTGACCTCTCGGTGGTTTCGAATTTTGCTTTTTCGTTTGCGATCATATCAGTGCTTACCGGTGTAACGACTCTGTACAACACTGGGTTGAAATTTGGGGGCCCAGTTTCTATTGTTTATGGGTGGCTTATAGCTGGTTGTTTCACCATGGTTGTTGGTTTGTCCATGGCTGAGATTTGTTCTTCTTACCCAACTTCTGGGGGTTTGTACTATTGGAGTGCCATGCTTGCTGGCCCAAAATGGGCACCCTTTGCTTCTTGGCTCACTGGCTGGTTCAACATAGTTGGTCAGTGGGCAGTCACAACTAGTATAGATTTTTCACTTGCAACGCTGATTCAAGTGATGATTCTCCTTAGCACAGGTGGGAAGAATAATGATGGCTATGAGGCTTCCAAATACGTAGTTATTTGTTTCCATGGAGGAATTTTGCTTCTACATGCTATCATAAACAGTCTTCCCATCTGGTATTTATCTTTCTTTGGACAGCTGGCTGCTGCATGGAATTTTGTAGGTGTCTTTGTCCTTATGATCCTCATTCCCCTCGTTGCAACGGAGAGGGCTAGTGCCAAGTTTGTATTCACTCACTTCAACACTGATAATGGCGATGGAGTTAACAACAAATTGTACATTTTTGTTCTGGGACTGTTAATGAGTCAATATACCTTAACTGGATATGATGCATCTGCTCATATGACAGAGGAAACCAAGAGCGCTGATATCAACGGACCAAAAGGAATAATCAGTTCCATTGGAATATCTATTATTGTTGGATGGGGTTATATCCTTGGGATCACCTTTGCTGTTACCAACATCCCATCCCTTTTGGATGAGAACAATGATGCCGGTGGTTATGCCATTGCTGAAGTATTTTATTTAGCTTTCAAGAGTAGGTATGGAACTGGAGTTGGAGGAATCATATGCTTGGGAGTGGTTGCTGTTGCCATATTTTTCTGTGGAATGAGTTCAGTTACTAGCAACTCCAGGATGGCTTATGCATTCTCTAGAGATGGAGCCATGCCATTTTCACCATTTTGGCATAAAGTGAACAAGCATGAAGTCCCCATAAATGCAGTTTGGCTTTCTGCTCTTATATCATTTTGCATGGCACTGACATCGCTTGGAAGCCTTGTGGCGTTCAATGCCATGGTGTCTATTGCAACCATTGGACTGTACATTGCTTATGCCCTGCCCATCTTCTTTAGGGTGACCTTGGCACGCAAGTCCTTCATCCCCGGACCTTTCAACTTGGGCCGCTATGGGATCCTTGTTGGCTGGATTGCAGTGCTTTGGGTGGCAATCATCTCAGTCCTCTTCTCGTTGCCTGTGGCCTATCCAATTAGCAACGAGACACTCAACTATACTCCTGTTGCAGTTGGCGGTTTGTTAATTATCACAGTATTTGCTTGGATATTCAGTGCTCGACACTGGTTTAAAGGTCCTATATCCAACATAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015174 GO:0015175 GO:0015179 GO:0015180 GO:0015181 GO:0015185 GO:0015189 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015718 GO:0015800 GO:0015802 GO:0015804 GO:0015807 GO:0015808 GO:0015809 GO:0015812 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022858 GO:0031224 GO:0031226 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

519

Amino Acids

56.04

Weight (kDa)

7.61

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	43 - 492	9.3e-58	Amino acid permease
AA_permease	PF00324	61 - 501	3.8e-23	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	3 cut(s)	15, 1351, 1476
AclWI	GGATC	4 cut(s)	622, 896, 1354, 1367
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	4 cut(s)	121, 191, 522, 601
AcuI	CTGAAG	1 cut(s)	981
AfaI	GTAC	4 cut(s)	176, 308, 725, 1271
AfeI	AGCGCT	1 cut(s)	811
AfiI	CCNNNNNNNGG	3 cut(s)	112, 296, 340
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	7 cut(s)	190, 376, 437, 688, 982, 1237, 1342
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	5 cut(s)	76, 94, 233, 586, 977
AluI	AGCT	5 cut(s)	76, 94, 233, 586, 977
Alw21I	GWGCWC	2 cut(s)	96, 1519
Alw26I	GTCTC	1 cut(s)	1439
AlwI	GGATC	4 cut(s)	622, 896, 1354, 1367
Aor51HI	AGCGCT	1 cut(s)	811
AoxI	GGCC	5 cut(s)	55, 199, 331, 1348, 1425
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	26, 590, 593
ApoI	RAATTY	4 cut(s)	121, 191, 522, 601
AsiGI	ACCGGT	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	1060
AspLEI	GCGC	1 cut(s)	812
AspS9I	GGNCC	7 cut(s)	199, 200, 332, 824, 1334, 1348, 1535
AsuC2I	CCSGG	1 cut(s)	1332
AsuHPI	GGTGA	4 cut(s)	235, 883, 1116, 1315
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	3 cut(s)	824, 1334, 1535
BaeGI	GKGCMC	2 cut(s)	203, 346
BamHI	GGATCC	1 cut(s)	1359
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	96, 203
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	2 cut(s)	96, 1519
BbvI	GCAGC	3 cut(s)	38, 577, 580
BccI	CCATC	8 cut(s)	470, 566, 698, 864, 922, 1078, 1100, 1298
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	1194, 1228
BciT130I	CCWGG	1 cut(s)	1081
BcnI	CCSGG	1 cut(s)	1332
BcoDI	GTCTC	1 cut(s)	1439
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	4 cut(s)	405, 660, 1071, 1101
BfoI	RGCGCY	1 cut(s)	813
BisI	GCNGC	5 cut(s)	16, 27, 591, 594, 1351
BlsI	GCNGC	5 cut(s)	17, 28, 592, 595, 1352
Bme1390I	CCNGG	2 cut(s)	1081, 1332
Bme18I	GGWCC	3 cut(s)	824, 1334, 1535
BmgT120I	GGNCC	7 cut(s)	199, 200, 332, 824, 1334, 1348, 1535
BmiI	GGNNCC	5 cut(s)	200, 201, 345, 1111, 1361
BmrFI	CCNGG	2 cut(s)	1081, 1332
BmrI	ACTGGG	2 cut(s)	192, 197
BmsI	GCATC	4 cut(s)	766, 788, 928, 1543
BmuI	ACTGGG	2 cut(s)	192, 197
BpiI	GAAGAC	1 cut(s)	545
BpmI	CTGGAG	2 cut(s)	1020, 1063
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	1332
BsaAI	YACGTR	1 cut(s)	499
BsaJI	CCNNGG	8 cut(s)	45, 246, 264, 514, 883, 1242, 1308, 1330
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 296, 340
Bse118I	RCCGGY	2 cut(s)	158, 941
Bse1I	ACTGG	6 cut(s)	187, 203, 370, 772, 1003, 1529
Bse3DI	GCAATG	2 cut(s)	954, 1272
BseBI	CCWGG	1 cut(s)	1081
BseDI	CCNNGG	8 cut(s)	45, 246, 264, 514, 883, 1242, 1308, 1330
BseGI	GGATG	6 cut(s)	875, 909, 914, 931, 1089, 1326
BseLI	CCNNNNNNNGG	3 cut(s)	112, 296, 340
BseMI	GCAATG	2 cut(s)	954, 1272
BseMII	CTCAG	2 cut(s)	261, 1416
BseNI	ACTGG	6 cut(s)	187, 203, 370, 772, 1003, 1529
BseSI	GKGCMC	2 cut(s)	203, 346
BseXI	GCAGC	3 cut(s)	38, 577, 580
BshFI	GGCC	5 cut(s)	57, 201, 333, 1350, 1427
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	96, 1519
BsiSI	CCGG	4 cut(s)	54, 159, 942, 1332
BslFI	GGGAC	2 cut(s)	753, 1142
BslI	CCNNNNNNNGG	3 cut(s)	112, 296, 340
BsmAI	GTCTC	1 cut(s)	1439
BsmFI	GGGAC	2 cut(s)	753, 1142
BsmI	GAATGC	1 cut(s)	1094
BsnI	GGCC	5 cut(s)	57, 201, 333, 1350, 1427
Bsp119I	TTCGAA	1 cut(s)	119
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	4 cut(s)	96, 203, 346, 1519
Bsp1407I	TGTACA	3 cut(s)	174, 723, 1269
Bsp143I	GATC	4 cut(s)	141, 627, 888, 1359
Bsp19I	CCATGG	4 cut(s)	246, 264, 514, 1242
BspACI	CCGC	3 cut(s)	15, 1351, 1476
BspANI	GGCC	5 cut(s)	57, 201, 333, 1350, 1427
BspCNI	CTCAG	2 cut(s)	262, 1415
BspLI	GGNNCC	5 cut(s)	200, 201, 345, 1111, 1361
BspPI	GGATC	4 cut(s)	622, 896, 1354, 1367
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	2 cut(s)	954, 1272
BsrFI	RCCGGY	2 cut(s)	158, 941
BsrGI	TGTACA	3 cut(s)	174, 723, 1269
BsrI	ACTGG	6 cut(s)	187, 203, 370, 772, 1003, 1529
BssAI	RCCGGY	2 cut(s)	158, 941
BssECI	CCNNGG	8 cut(s)	45, 246, 264, 514, 883, 1242, 1308, 1330
BssMI	GATC	4 cut(s)	141, 627, 888, 1359
BssT1I	CCWWGG	7 cut(s)	45, 246, 264, 514, 883, 1242, 1308
Bst2UI	CCWGG	1 cut(s)	1081
Bst4CI	ACNGT	4 cut(s)	551, 744, 1269, 1495
Bst6I	CTCTTC	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	3 cut(s)	174, 723, 1269
BstBAI	YACGTR	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	327, 331, 588, 1315
BstDEI	CTNAG	3 cut(s)	270, 452, 1402
BstDSI	CCRYGG	4 cut(s)	246, 264, 514, 1242
BstEII	GGTNACC	1 cut(s)	1303
BstF5I	GGATG	6 cut(s)	875, 909, 914, 931, 1089, 1326
BstH2I	RGCGCY	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	812
BstKTI	GATC	4 cut(s)	144, 630, 891, 1362
BstMAI	GTCTC	1 cut(s)	1439
BstMBI	GATC	4 cut(s)	141, 627, 888, 1359
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 350, 1238
BstNI	CCWGG	1 cut(s)	1081
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	1303
BstSCI	CCNGG	2 cut(s)	1079, 1330
BstSLI	GKGCMC	2 cut(s)	203, 346
BstSNI	TACGTA	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	38, 577, 580
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	1359
BstYI	RGATCY	1 cut(s)	1359
BsuRI	GGCC	5 cut(s)	57, 201, 333, 1350, 1427
BtgI	CCRYGG	4 cut(s)	246, 264, 514, 1242
BtgZI	GCGATG	2 cut(s)	717, 1197
BtsCI	GGATG	6 cut(s)	875, 909, 914, 931, 1089, 1326
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	9 cut(s)	156, 180, 363, 395, 690, 1205, 1386, 1519, 1522
Cac8I	GCNNGC	4 cut(s)	327, 331, 588, 1315
CfoI	GCGC	1 cut(s)	812
Cfr10I	RCCGGY	2 cut(s)	158, 941
Cfr13I	GGNCC	7 cut(s)	199, 200, 332, 824, 1334, 1348, 1535
Csp6I	GTAC	4 cut(s)	175, 307, 724, 1270
CspAI	ACCGGT	1 cut(s)	158
CviQI	GTAC	4 cut(s)	175, 307, 724, 1270
DdeI	CTNAG	3 cut(s)	270, 452, 1402
DpnI	GATC	4 cut(s)	143, 629, 890, 1361
DpnII	GATC	4 cut(s)	141, 627, 888, 1359
DraI	TTTAAA	1 cut(s)	1531
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	1415
EarI	CTCTTC	1 cut(s)	1415
Ecl136II	GAGCTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	499
Eco130I	CCWWGG	7 cut(s)	45, 246, 264, 514, 883, 1242, 1308
Eco24I	GRGCYC	2 cut(s)	96, 203
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	824, 1334, 1535
Eco47III	AGCGCT	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	981
Eco91I	GGTNACC	1 cut(s)	1303
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	199, 1535
EcoO65I	GGTNACC	1 cut(s)	1303
EcoRII	CCWGG	1 cut(s)	1079
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	7 cut(s)	45, 246, 264, 514, 883, 1242, 1308
EcoT22I	ATGCAT	3 cut(s)	781, 1096, 1558
EcoT38I	GRGCYC	2 cut(s)	96, 203
ErhI	CCWWGG	7 cut(s)	45, 246, 264, 514, 883, 1242, 1308
FaqI	GGGAC	2 cut(s)	753, 1142
FauNDI	CATATG	2 cut(s)	789, 1016
Fnu4HI	GCNGC	5 cut(s)	16, 27, 591, 594, 1351
FokI	GGATG	6 cut(s)	882, 896, 901, 938, 1096, 1313
FriOI	GRGCYC	2 cut(s)	96, 203
Fsp4HI	GCNGC	5 cut(s)	16, 27, 591, 594, 1351
FspBI	CTAG	4 cut(s)	405, 660, 1071, 1101
GlaI	GCGC	1 cut(s)	811
GluI	GCNGC	5 cut(s)	16, 27, 591, 594, 1351
GsuI	CTGGAG	2 cut(s)	1020, 1063
HaeII	RGCGCY	1 cut(s)	813
HaeIII	GGCC	5 cut(s)	57, 201, 333, 1350, 1427
HapII	CCGG	4 cut(s)	54, 159, 942, 1332
HhaI	GCGC	1 cut(s)	812
Hin6I	GCGC	1 cut(s)	810
HinP1I	GCGC	1 cut(s)	810
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	7 cut(s)	5, 50, 169, 433, 445, 751, 1011
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	4 cut(s)	54, 159, 942, 1332
HphI	GGTGA	4 cut(s)	235, 883, 1116, 1315
Hpy166II	GTNNAC	2 cut(s)	712, 1144
Hpy188III	TCNNGA	2 cut(s)	982, 1101
Hpy8I	GTNNAC	2 cut(s)	712, 1144
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	1333
HpyCH4III	ACNGT	4 cut(s)	551, 744, 1269, 1495
HpyCH4IV	ACGT	3 cut(s)	39, 64, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 350, 1238
HpyF3I	CTNAG	3 cut(s)	270, 452, 1402
HpySE526I	ACGT	3 cut(s)	39, 64, 498
HspAI	GCGC	1 cut(s)	810
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	141, 627, 888, 1359
LmnI	GCTCC	1 cut(s)	1109
Lsp1109I	GCAGC	3 cut(s)	38, 577, 580
LweI	GCATC	4 cut(s)	766, 788, 928, 1543
MaeI	CTAG	4 cut(s)	405, 660, 1071, 1101
MaeII	ACGT	3 cut(s)	39, 64, 498
MaeIII	GTNAC	6 cut(s)	101, 163, 397, 901, 1066, 1303
MalI	GATC	4 cut(s)	143, 629, 890, 1361
MboI	GATC	4 cut(s)	141, 627, 888, 1359
MboII	GAAGA	5 cut(s)	273, 478, 545, 1285, 1402
MflI	RGATCY	1 cut(s)	1359
MhlI	GDGCHC	4 cut(s)	96, 203, 346, 1519
MluCI	AATT	7 cut(s)	121, 191, 522, 601, 719, 1434, 1485
MlyI	GAGTC	3 cut(s)	14, 163, 760
MmeI	TCCRAC	2 cut(s)	847, 985
MnlI	CCTC	9 cut(s)	116, 478, 512, 641, 648, 650, 790, 1001, 1418
Mph1103I	ATGCAT	3 cut(s)	781, 1096, 1558
MroXI	GAANNNNTTC	1 cut(s)	1060
MseI	TTAA	6 cut(s)	69, 711, 746, 764, 1484, 1530
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	4 cut(s)	54, 159, 942, 1332
MspR9I	CCNGG	2 cut(s)	1081, 1332
Mva1269I	GAATGC	1 cut(s)	1094
MvaI	CCWGG	1 cut(s)	1081
MwoI	GCNNNNNNNGC	3 cut(s)	326, 350, 1238
NciI	CCSGG	1 cut(s)	1332
NcoI	CCATGG	4 cut(s)	246, 264, 514, 1242
NdeI	CATATG	2 cut(s)	789, 1016
NdeII	GATC	4 cut(s)	141, 627, 888, 1359
NlaIV	GGNNCC	5 cut(s)	200, 201, 345, 1111, 1361
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	3 cut(s)	101, 397, 1303
NsiI	ATGCAT	3 cut(s)	781, 1096, 1558
NspI	RCATGY	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	1094
PdmI	GAANNNNTTC	1 cut(s)	1060
PfeI	GAWTC	4 cut(s)	50, 433, 445, 1011
PflMI	CCANNNNNTGG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	1079
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	17, 28, 592, 595, 1352
PleI	GAGTC	3 cut(s)	13, 163, 759
PpsI	GAGTC	3 cut(s)	13, 163, 759
Ppu21I	YACGTR	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	1535
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	1535
Psp6I	CCWGG	1 cut(s)	1079
PspEI	GGTNACC	1 cut(s)	1303
PspGI	CCWGG	1 cut(s)	1079
PspN4I	GGNNCC	5 cut(s)	200, 201, 345, 1111, 1361
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	7 cut(s)	199, 200, 332, 824, 1334, 1348, 1535
PspPPI	RGGWCCY	1 cut(s)	1535
PsuI	RGATCY	1 cut(s)	1359
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	4 cut(s)	176, 308, 725, 1271
RsaNI	GTAC	4 cut(s)	175, 307, 724, 1270
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	6 cut(s)	69, 711, 746, 764, 1484, 1530
SatI	GCNGC	5 cut(s)	16, 27, 591, 594, 1351
Sau3AI	GATC	4 cut(s)	141, 627, 888, 1359
Sau96I	GGNCC	7 cut(s)	199, 200, 332, 824, 1334, 1348, 1535
SchI	GAGTC	3 cut(s)	14, 163, 760
ScrFI	CCNGG	2 cut(s)	1081, 1332
SduI	GDGCHC	4 cut(s)	96, 203, 346, 1519
SfaNI	GCATC	4 cut(s)	766, 788, 928, 1543
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	3 cut(s)	824, 1334, 1535
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	499
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	7 cut(s)	121, 191, 522, 601, 719, 1434, 1485
SsiI	CCGC	3 cut(s)	15, 1351, 1476
SspMI	CTAG	4 cut(s)	405, 660, 1071, 1101
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	1079, 1330
StyI	CCWWGG	7 cut(s)	45, 246, 264, 514, 883, 1242, 1308
TaaI	ACNGT	4 cut(s)	551, 744, 1269, 1495
TaiI	ACGT	3 cut(s)	42, 67, 501
TaqI	TCGA	2 cut(s)	119, 1519
TasI	AATT	7 cut(s)	121, 191, 522, 601, 719, 1434, 1485
TatI	WGTACW	4 cut(s)	174, 306, 723, 1269
TauI	GCSGC	2 cut(s)	18, 1353
TfiI	GAWTC	4 cut(s)	50, 433, 445, 1011
Tru1I	TTAA	6 cut(s)	69, 711, 746, 764, 1484, 1530
Tru9I	TTAA	6 cut(s)	69, 711, 746, 764, 1484, 1530
TscAI	CASTG	9 cut(s)	156, 187, 370, 395, 697, 1212, 1386, 1519, 1529
TseFI	GTSAC	3 cut(s)	101, 397, 1303
TseI	GCWGC	3 cut(s)	26, 590, 593
Tsp45I	GTSAC	3 cut(s)	101, 397, 1303
TspDTI	ATGAA	2 cut(s)	1167, 1315
TspGWI	ACGGA	2 cut(s)	665, 837
TspRI	CASTG	9 cut(s)	156, 187, 370, 395, 697, 1212, 1386, 1519, 1529
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	824, 1334, 1535
XapI	RAATTY	4 cut(s)	121, 191, 522, 601
XbaI	TCTAGA	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	1060
XspI	CTAG	4 cut(s)	405, 660, 1071, 1101
Zsp2I	ATGCAT	3 cut(s)	781, 1096, 1558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.