Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

44797877 .. 44802656

Gene Structure 4780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGCCTCCACGACCCGGCCCTTCATCTTCGCCCTCGCTTTCCTCACTATTTACACCGCCCTGCCACTCTCCCTCTCTCAGACCACCACCGAAGCCCCCGCGCCGGCCGCCGATTTGTGCAACGGCATCTTCATATCCTACTCCTACACCGACGGCAAGCAGATCGCCCCCACCATGCCGGCGCGGCAGCCCTACCGGTTCGAGTCCGTGCTGACTGTGCTCAACAACGGCGAGGAGGACCTCAAGTCGTGGAAGGTGTTCGTAGGGTTTCAGCACGGCGAGTACTTGGTCTCTGCTGCCAATGCTGTGCTCGCCGACGGGAGTGCGTATCCCGGAAGTGTGGAGAACGGCACCGTTTTCGCCGGGTTCCCGCAGACCGATCTGAAGACGGCGATCAAGACGGCGGGGGACTTGACGCAGATGCAGGTGCAGGTGAAGTTGATCGGGACTCAGTTCGGTGTGGCGCCGCCGAATGTTCCGATGCCGGTCAATATCTCTTTGGCTAATGATGGCTTTCGTTGCCTCAAGGCCTCATTGCAAGGGAAGAGTGAAATGCAAGTCTGCTGCATTGTAGACTCTACGGTGAAAACAAACATCACTGCAGATGAAGAGTTTCTCCCTCGCCAGAATGGAGATCTTTCAATCATGTATGATGTGACCCGGACGTATGGATCAAGTTACTTTGCACAAGTGACAATCTCCAACCATAACTCTCTAGGCCGTCTTGATAGTTGGAAGTTGAGCTGGGACTGGATGGCACAAGAGTTTATCAATACGATGAGAGGGGCCTATCCATCTGTCGTTGATTCTTCTGAATGCATATTTGGCGAACAAGGTAAATACTATGCGGATCTAGACTTTGCCAATGTCTTGAGTTGTGAAAAAAGGCCAACCATTATTGACCTGCCTCTGGAAAAGACTAATGACACTAAACTTGGTATGATCCCTTATTGTTGCCGAAATGGTACTATCTTGCCAACAACAATGGATGCAACCAAGTCAAAATCTTCATTCCAGATGGAAGTCTATAAAATGCCTCCAAATATCAACCGCTCTGTGATCATACCACCACAAAACTGGGCAATCAATGGCACTCTCAACCCTGATTACAAATGTGGTCCTCCTGTGCGGGTGAGTCCTAGTCAATTCCCTGATGCAAGTGGCTTACCGGTGAATTCAACTGCAGTAGCCAGCTGGCAGGTTGTGTGCAATATTACACAGGCCAAGGGAGCAAGCCCTAGATGCTGTGTTTCATTTTCTGCTTACTTCAACGAGTCTGTTGTACCATGCAAAACTTGTGCGTGTGGGTGCCCTAGAAATACAGCTCAAACTTGTAGCACAACTGCACAGGCTATGCTTCTTCCACCAGAGTCGCTTCTCGTTCCCTTTGAGAACCGAACTGTCAAGGCAAAAGCTTGGGCTGAGCTTAAACACCTAGCAGATCCGAACCCAATGCCCTGTGGTGATAACTGTGGGGTCAGCATTAACTGGCACGTACTCTCAGACTACAGTAAAGGATGGACTGCAAGGGTTACACTCTTCAACTGGGGCGAAACTTCTTTTGCTGATTGGTTTACTGCAGTACAACTGGATAAAGCTGTTCCTGGTTTTGAAAAAATGTACTCTTTCAACGCTACTACTGTGGGAACGGATGGGCTCAACAATACGGTGTTTATGCAGGGTCTTGAAGGATTGAACTACCTTGTGGCAGAAGTAGATGGAGCCAACCCAAAGAAGGATCCTAGGGTGCCTGGGAAGCAGCAATCAGTGATCTCATTTACAAAGAAGCTTACTCCTGGAATTAATGTGGCTGGTAGAGATGGGTTTCCGACAAAAGTGTTCTTCAATGGGGAGGAGTGCTCACTTCCTGATATATACCCAAGTAGTGCTTACAGAACAAGCTCAGCCATGATGATGTTTCCTGTCCTCCTAATGGTTGCAGTGTTCATGTTGATGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015174 GO:0015175 GO:0015179 GO:0015180 GO:0015181 GO:0015185 GO:0015189 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015718 GO:0015800 GO:0015802 GO:0015804 GO:0015807 GO:0015808 GO:0015809 GO:0015812 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022858 GO:0031224 GO:0031226 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

654

Amino Acids

71.45

Weight (kDa)

5.64

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	227 - 406	1.2e-64	COBRA-like protein
COB_C	PF25079	414 - 627	2e-100	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	415, 421
Acc36I	ACCTGC	4 cut(s)	415, 421, 912, 1189
AccB1I	GGYRCC	4 cut(s)	350, 463, 1308, 1747
AccBSI	CCGCTC	1 cut(s)	1053
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	101, 184
AclWI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	6 cut(s)	284, 967, 1284, 1497, 1584, 1622
AfiI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
AgeI	ACCGGT	2 cut(s)	195, 1168
AgsI	TTSAA	9 cut(s)	642, 1179, 1270, 1543, 1613, 1630, 1688, 1696, 1846
AhdI	GACNNNNNGTC	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	1603, 1750, 1795
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	8 cut(s)	744, 1194, 1325, 1415, 1426, 1598, 1789, 1902
AluI	AGCT	8 cut(s)	744, 1194, 1325, 1415, 1426, 1598, 1789, 1902
Alw21I	GWGCWC	3 cut(s)	222, 312, 1862
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
AoxI	GGCC	8 cut(s)	3, 17, 105, 528, 718, 786, 887, 1221
ApeKI	GCWGC	5 cut(s)	187, 296, 564, 1759, 1957
ApoI	RAATTY	1 cut(s)	1174
AseI	ATTAAT	1 cut(s)	1803
AsiGI	ACCGGT	2 cut(s)	195, 1168
Asp700I	GAANNNNTTC	2 cut(s)	257, 612
AspA2I	CCTAGG	1 cut(s)	1742
AspLEI	GCGC	3 cut(s)	103, 184, 466
AspS9I	GGNCC	4 cut(s)	18, 238, 786, 1118
AsuC2I	CCSGG	4 cut(s)	16, 333, 364, 661
AsuHPI	GGTGA	5 cut(s)	445, 595, 1144, 1183, 1475
AvaII	GGWCC	2 cut(s)	238, 1118
AvrII	CCTAGG	1 cut(s)	1742
BaeGI	GKGCMC	1 cut(s)	1313
BamHI	GGATCC	1 cut(s)	1738
BanI	GGYRCC	4 cut(s)	350, 463, 1308, 1747
BanII	GRGCYC	1 cut(s)	1659
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	3 cut(s)	222, 312, 1862
BbvI	GCAGC	4 cut(s)	199, 283, 551, 1771
BccI	CCATC	8 cut(s)	503, 748, 802, 1012, 1512, 1646, 1712, 1814
BceAI	ACGGC	8 cut(s)	139, 169, 244, 292, 364, 405, 417, 705
BcgI	CGANNNNNNTGC	8 cut(s)	145, 179, 305, 339, 340, 374, 1435, 1469
BciT130I	CCWGG	3 cut(s)	1605, 1752, 1797
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	1059
BcnI	CCSGG	4 cut(s)	16, 333, 364, 661
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
BfmI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
BfoI	RGCGCY	1 cut(s)	467
BfuAI	ACCTGC	4 cut(s)	415, 421, 912, 1189
BfuI	GTATCC	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
BlnI	CCTAGG	1 cut(s)	1742
BlpI	GCTNAGC	2 cut(s)	1422, 1903
BlsI	GCNGC	8 cut(s)	109, 186, 189, 298, 468, 566, 1761, 1959
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	7 cut(s)	16, 333, 364, 661, 1605, 1752, 1797
Bme18I	GGWCC	2 cut(s)	238, 1118
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	4 cut(s)	18, 238, 786, 1118
BmiI	GGNNCC	8 cut(s)	352, 368, 465, 787, 1310, 1723, 1740, 1749
BmrFI	CCNGG	7 cut(s)	16, 333, 364, 661, 1605, 1752, 1797
BmrI	ACTGGG	2 cut(s)	1087, 1555
BmsI	GCATC	7 cut(s)	135, 411, 471, 979, 1144, 1232, 1944
BmuI	ACTGGG	2 cut(s)	1087, 1555
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	1844, 1876
Bpu1102I	GCTNAGC	2 cut(s)	1422, 1903
BpuEI	CTTGAG	3 cut(s)	227, 509, 892
BpuMI	CCSGG	4 cut(s)	16, 333, 364, 661
BsaAI	YACGTR	1 cut(s)	1495
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	1224, 1742, 1751
BsaWI	WCCGGW	2 cut(s)	195, 1168
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
Bse118I	RCCGGY	5 cut(s)	103, 178, 195, 484, 1168
Bse1I	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	3 cut(s)	1605, 1752, 1797
BseDI	CCNNGG	3 cut(s)	1224, 1742, 1751
BseGI	GGATG	4 cut(s)	759, 994, 1523, 1657
BseLI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	5 cut(s)	92, 464, 1413, 1515, 1917
BseNI	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
BseRI	GAGGAG	2 cut(s)	248, 1868
BseSI	GKGCMC	1 cut(s)	1313
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	199, 283, 551, 1771
BseYI	CCCAGC	1 cut(s)	744
BsgI	GTGCAG	2 cut(s)	449, 1329
Bsh1236I	CGCG	2 cut(s)	101, 184
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	8 cut(s)	5, 19, 107, 530, 720, 788, 889, 1223
BshNI	GGYRCC	4 cut(s)	350, 463, 1308, 1747
BshTI	ACCGGT	2 cut(s)	195, 1168
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	3 cut(s)	222, 312, 1862
BsiSI	CCGG	9 cut(s)	16, 104, 179, 196, 333, 363, 485, 661, 1169
BslFI	GGGAC	3 cut(s)	422, 460, 761
BslI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	3 cut(s)	422, 460, 761
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	8 cut(s)	5, 19, 107, 530, 720, 788, 889, 1223
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	5 cut(s)	222, 312, 1313, 1659, 1862
Bsp1720I	GCTNAGC	2 cut(s)	1422, 1903
BspANI	GGCC	8 cut(s)	5, 19, 107, 530, 720, 788, 889, 1223
BspCNI	CTCAG	5 cut(s)	91, 463, 1414, 1514, 1916
BspFNI	CGCG	2 cut(s)	101, 184
BspLI	GGNNCC	8 cut(s)	352, 368, 465, 787, 1310, 1723, 1740, 1749
BspMAI	CTGCAG	3 cut(s)	604, 1186, 1582
BspMI	ACCTGC	4 cut(s)	415, 421, 912, 1189
BspPI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
BspT107I	GGYRCC	4 cut(s)	350, 463, 1308, 1747
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	1053
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	5 cut(s)	103, 178, 195, 484, 1168
BsrI	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
BssAI	RCCGGY	5 cut(s)	103, 178, 195, 484, 1168
BssECI	CCNNGG	3 cut(s)	1224, 1742, 1751
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	1224, 1742
Bst2UI	CCWGG	3 cut(s)	1605, 1752, 1797
Bst4CI	ACNGT	8 cut(s)	217, 355, 583, 1402, 1472, 1511, 1642, 1669
Bst6I	CTCTTC	3 cut(s)	539, 603, 1544
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	1495
BstC8I	GCNNGC	7 cut(s)	105, 158, 180, 312, 1192, 1196, 1234
BstDEI	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
BstF5I	GGATG	4 cut(s)	759, 994, 1523, 1657
BstFNI	CGCG	2 cut(s)	101, 184
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	3 cut(s)	103, 184, 466
BstMAI	GTCTC	1 cut(s)	295
BstMCI	CGRYCG	1 cut(s)	108
BstNI	CCWGG	3 cut(s)	1605, 1752, 1797
BstSCI	CCNGG	7 cut(s)	14, 331, 362, 659, 1603, 1750, 1795
BstSFI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
BstSLI	GKGCMC	1 cut(s)	1313
BstUI	CGCG	2 cut(s)	101, 184
BstV1I	GCAGC	4 cut(s)	199, 283, 551, 1771
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	4 cut(s)	634, 850, 1441, 1738
BstXI	CCANNNNNNTGG	1 cut(s)	1077
BstYI	RGATCY	4 cut(s)	634, 850, 1441, 1738
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	8 cut(s)	5, 19, 107, 530, 720, 788, 889, 1223
BtsCI	GGATG	4 cut(s)	759, 994, 1523, 1657
BtsI	GCAGTG	2 cut(s)	597, 1947
BtsIMutI	CAGTG	3 cut(s)	597, 1773, 1947
BveI	ACCTGC	4 cut(s)	415, 421, 912, 1189
Cac8I	GCNNGC	7 cut(s)	105, 158, 180, 312, 1192, 1196, 1234
CfoI	GCGC	3 cut(s)	103, 184, 466
Cfr10I	RCCGGY	5 cut(s)	103, 178, 195, 484, 1168
Cfr13I	GGNCC	4 cut(s)	18, 238, 786, 1118
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
CspAI	ACCGGT	2 cut(s)	195, 1168
CviAII	CATG	5 cut(s)	175, 646, 1287, 1909, 1948
CviQI	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
DdeI	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
DinI	GGCGCC	1 cut(s)	465
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	539, 603, 1544
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	539, 603, 1544
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	1224, 1742
Eco147I	AGGCCT	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	1659
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	238, 1118
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	2 cut(s)	238, 786
EcoRI	GAATTC	1 cut(s)	1174
EcoRII	CCWGG	3 cut(s)	1603, 1750, 1795
EcoT14I	CCWWGG	2 cut(s)	1224, 1742
EcoT22I	ATGCAT	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	1659
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	1224, 1742
FaeI	CATG	5 cut(s)	178, 649, 1290, 1912, 1951
FalI	AAGNNNNNCTT	2 cut(s)	1873, 1905
FaqI	GGGAC	3 cut(s)	422, 460, 761
FatI	CATG	5 cut(s)	174, 645, 1286, 1908, 1947
FauI	CCCGC	4 cut(s)	106, 378, 397, 1122
FbaI	TGATCA	1 cut(s)	1059
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
FokI	GGATG	4 cut(s)	766, 1001, 1530, 1664
FriOI	GRGCYC	1 cut(s)	1659
Fsp4HI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
FspBI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
GlaI	GCGC	3 cut(s)	102, 183, 465
GluI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
GsaI	CCCAGC	1 cut(s)	748
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	8 cut(s)	5, 19, 107, 530, 720, 788, 889, 1223
HapII	CCGG	9 cut(s)	16, 104, 179, 196, 333, 363, 485, 661, 1169
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	103, 184, 466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	5 cut(s)	178, 649, 1290, 1912, 1951
Hin6I	GCGC	3 cut(s)	101, 182, 464
HinP1I	GCGC	3 cut(s)	101, 182, 464
HindIII	AAGCTT	2 cut(s)	1413, 1787
HinfI	GANTC	7 cut(s)	203, 448, 575, 806, 1135, 1274, 1370
HpaII	CCGG	9 cut(s)	16, 104, 179, 196, 333, 363, 485, 661, 1169
HphI	GGTGA	5 cut(s)	445, 595, 1144, 1183, 1475
Hpy166II	GTNNAC	2 cut(s)	574, 1575
Hpy188I	TCNGA	7 cut(s)	81, 384, 480, 814, 1446, 1504, 1830
Hpy188III	TCNNGA	9 cut(s)	397, 445, 725, 854, 871, 911, 1015, 1685, 1868
Hpy8I	GTNNAC	2 cut(s)	574, 1575
Hpy99I	CGWCG	2 cut(s)	155, 320
HpyAV	CCTTC	4 cut(s)	31, 247, 1682, 1729
HpyCH4III	ACNGT	8 cut(s)	217, 355, 583, 1402, 1472, 1511, 1642, 1669
HpyCH4IV	ACGT	2 cut(s)	665, 1494
HpyF3I	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
HpySE526I	ACGT	2 cut(s)	665, 1494
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	178, 649, 1290, 1912, 1951
HspAI	GCGC	3 cut(s)	101, 182, 464
KasI	GGCGCC	1 cut(s)	463
KroI	GCCGGC	2 cut(s)	103, 178
KroNI	GCCGGC	2 cut(s)	105, 180
Ksp22I	TGATCA	1 cut(s)	1059
LmnI	GCTCC	2 cut(s)	1229, 1721
Lsp1109I	GCAGC	4 cut(s)	199, 283, 551, 1771
LweI	GCATC	7 cut(s)	135, 411, 471, 979, 1144, 1232, 1944
MaeI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
MaeII	ACGT	2 cut(s)	665, 1494
MaeIII	GTNAC	4 cut(s)	655, 677, 691, 1531
MbiI	CCGCTC	1 cut(s)	1053
MflI	RGATCY	4 cut(s)	634, 850, 1441, 1738
MhlI	GDGCHC	5 cut(s)	222, 312, 1313, 1659, 1862
MluCI	AATT	3 cut(s)	1145, 1174, 1800
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	6 cut(s)	212, 442, 569, 1144, 1283, 1379
MmeI	TCCRAC	3 cut(s)	713, 726, 1853
Mph1103I	ATGCAT	1 cut(s)	821
MroNI	GCCGGC	2 cut(s)	103, 178
MroXI	GAANNNNTTC	2 cut(s)	257, 612
MseI	TTAA	3 cut(s)	1428, 1485, 1803
MslI	CAYNNNNRTG	2 cut(s)	1913, 1952
MspA1I	CMGCKG	1 cut(s)	1194
MspI	CCGG	9 cut(s)	16, 104, 179, 196, 333, 363, 485, 661, 1169
MspR9I	CCNGG	7 cut(s)	16, 333, 364, 661, 1605, 1752, 1797
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	3 cut(s)	1605, 1752, 1797
MvnI	CGCG	2 cut(s)	101, 184
NaeI	GCCGGC	2 cut(s)	105, 180
NarI	GGCGCC	1 cut(s)	464
NciI	CCSGG	4 cut(s)	16, 333, 364, 661
NgoMIV	GCCGGC	2 cut(s)	103, 178
NlaIII	CATG	5 cut(s)	178, 649, 1290, 1912, 1951
NlaIV	GGNNCC	8 cut(s)	352, 368, 465, 787, 1310, 1723, 1740, 1749
NmuCI	GTSAC	2 cut(s)	655, 691
NsiI	ATGCAT	1 cut(s)	821
PaqCI	CACCTGC	2 cut(s)	415, 421
PceI	AGGCCT	1 cut(s)	530
PctI	GAATGC	1 cut(s)	821
PdiI	GCCGGC	2 cut(s)	105, 180
PdmI	GAANNNNTTC	2 cut(s)	257, 612
PfeI	GAWTC	1 cut(s)	806
PfoI	TCCNGGA	2 cut(s)	331, 1795
PinAI	ACCGGT	2 cut(s)	195, 1168
PkrI	GCNGC	8 cut(s)	109, 186, 189, 298, 468, 566, 1761, 1959
PleI	GAGTC	6 cut(s)	211, 442, 569, 1143, 1282, 1378
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	6 cut(s)	211, 442, 569, 1143, 1282, 1378
Ppu21I	YACGTR	1 cut(s)	1495
PpuMI	RGGWCCY	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	1803
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	1603, 1750, 1795
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	3 cut(s)	1603, 1750, 1795
PspN4I	GGNNCC	8 cut(s)	352, 368, 465, 787, 1310, 1723, 1740, 1749
PspPI	GGNCC	4 cut(s)	18, 238, 786, 1118
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	3 cut(s)	604, 1186, 1582
PsuI	RGATCY	4 cut(s)	634, 850, 1441, 1738
PvuII	CAGCTG	1 cut(s)	1194
RsaI	GTAC	6 cut(s)	284, 967, 1284, 1497, 1584, 1622
RsaNI	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
RseI	CAYNNNNRTG	2 cut(s)	1913, 1952
SaqAI	TTAA	3 cut(s)	1428, 1485, 1803
SatI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
Sau96I	GGNCC	4 cut(s)	18, 238, 786, 1118
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	6 cut(s)	212, 442, 569, 1144, 1283, 1379
ScrFI	CCNGG	7 cut(s)	16, 333, 364, 661, 1605, 1752, 1797
SduI	GDGCHC	5 cut(s)	222, 312, 1313, 1659, 1862
SfaNI	GCATC	7 cut(s)	135, 411, 471, 979, 1144, 1232, 1944
SfcI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
SfoI	GGCGCC	1 cut(s)	465
SinI	GGWCC	2 cut(s)	238, 1118
SmiMI	CAYNNNNRTG	2 cut(s)	1913, 1952
SmlI	CTYRAG	3 cut(s)	242, 524, 871
SmoI	CTYRAG	3 cut(s)	242, 524, 871
Sse9I	AATT	3 cut(s)	1145, 1174, 1800
SseBI	AGGCCT	1 cut(s)	530
SspDI	GGCGCC	1 cut(s)	463
SspI	AATATT	1 cut(s)	1213
SspMI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	7 cut(s)	14, 331, 362, 659, 1603, 1750, 1795
StyI	CCWWGG	2 cut(s)	1224, 1742
TaaI	ACNGT	8 cut(s)	217, 355, 583, 1402, 1472, 1511, 1642, 1669
TaiI	ACGT	2 cut(s)	668, 1497
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	1145, 1174, 1800
TatI	WGTACW	3 cut(s)	282, 1582, 1620
TauI	GCSGC	3 cut(s)	110, 187, 469
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	3 cut(s)	1428, 1485, 1803
Tru9I	TTAA	3 cut(s)	1428, 1485, 1803
TscAI	CASTG	3 cut(s)	604, 1773, 1947
TseFI	GTSAC	2 cut(s)	655, 691
TseI	GCWGC	5 cut(s)	187, 296, 564, 1759, 1957
Tsp45I	GTSAC	2 cut(s)	655, 691
TspDTI	ATGAA	6 cut(s)	13, 121, 621, 999, 1242, 1936
TspGWI	ACGGA	2 cut(s)	196, 1664
TspRI	CASTG	3 cut(s)	604, 1773, 1947
VpaK11BI	GGWCC	2 cut(s)	238, 1118
VspI	ATTAAT	1 cut(s)	1803
XapI	RAATTY	1 cut(s)	1174
XbaI	TCTAGA	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1074
XmaJI	CCTAGG	1 cut(s)	1742
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	2 cut(s)	257, 612
XspI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.