Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

69976490 .. 69980239

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGACAGAACCAAGTAGATGCATCACAAATCCAAGAGATGGATTCAGGGGAAAAGCGACTTAATGAGCTTGGTTACAAGCAAGAACTCAGAAGAGAGATGACTTTGTTCAAAACTCTTGCAATATCATTCTCGACGATGACACTCTTCACCAGAATCACTCCTTTGTATGGTTCTAGCCTTGTATATGCAGGTCCTGCAAGCCTTGTGTGGGGTTGGGTGGTAGTATCATTTTTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

80

Amino Acids

9.07

Weight (kDa)

6.13

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	40, 170, 211
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	142, 229
AvaII	GGWCC	1 cut(s)	194
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmsI	GCATC	2 cut(s)	10, 32
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 170, 211
BseLI	CCNNNNNNNGG	3 cut(s)	40, 170, 211
BseMII	CTCAG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	40, 170, 211
BsmFI	GGGAC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	88, 152
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	194
CviJI	RGCY	3 cut(s)	70, 180, 204
CviKI_1	RGCY	3 cut(s)	70, 180, 204
DdeI	CTNAG	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	88, 152
EarI	CTCTTC	2 cut(s)	88, 152
Eco47I	GGWCC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	194
EcoT22I	ATGCAT	1 cut(s)	25
FaiI	YATR	3 cut(s)	171, 187, 189
FaqI	GGGAC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	177
HinfI	GANTC	2 cut(s)	44, 156
HphI	GGTGA	2 cut(s)	142, 229
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	23, 122, 191, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	33, 166, 177, 210
LweI	GCATC	2 cut(s)	10, 32
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	105, 139
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	44, 156
PflMI	CCANNNNNTGG	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	194
SetI	ASST	3 cut(s)	72, 196, 242
SfaNI	GCATC	2 cut(s)	10, 32
SinI	GGWCC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	44, 156
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	194
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.