Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

59222565 .. 59225197

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0460400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGAAATGGAGATGCTTATCCTTTCTGTGCTAGTTCTCTTTGTTTCTCTCTACTATCTTTTTCATATGTTGAATAGAAATGCTAGCAAAAATGAAGTTCATCATCATCATCAGCTTCAGATCCCACCAGGAAGCTCAGGTTGGCCCATCATCGGCGAAGGCCTTGCTTTTTTGATGACAGCCAAAAGGGGTGTCCCCGAGAAGTTCATAGGAGAGAGGAGGATCAAGTACTCATCATCACATTCCAAAAGCAGCAGCAGCTGCAAGGTGTTCACCACATCGTTGCTGCGTGAATCCGTGGCGGTGCTGTGTACTGCCGCTGGAAACAAGTTCCTGTTTTCAAACGAAAACAAACTCGTCCACTCATGGTGGCCTAATAACATCTACACCATCTTTGCCGGCGCCGACAAACCAGAAACCCACGAGGAGTCCATTCGACTCCGCAAAGTTCTGACTCCATTTTTCAGCCCCAATTGTCTCCAAAAGTACGTAGGAATCATGGATGCCTTCACCAAACGTCATATGGACGTGTTTTGGTCGGATAAAAAACAAGTCCAAGTTCTGGCCCTAACAAAGATGCACACCTTCACATTGGTGTGTAAAATCTTCTTAAACGTGGAGGATCCAGCAGTGATTGCCAAACTAGAGGAGCCAATTCAGCATATTGCAGCAGGCTTCATTTCGTTGCCGATAAATCTGCCTGGCACAGCATTCAACCGAGCCATTCGAGCATCCAAGCAAGTCAGGAAGGACCTTGAAGAAATGGTTGAGCAGAGGAGAATCGATCTAGATCGATATCGACAGACGGCCACGGCAGCAGATCTAGATGAGAGTAATAATATTAATCAAGATTTGATGTCTAAATTGCTAATGGACACATATAGCGACGGCCGACAGATGAAGGAAACTGACATCGCCGACATCGCCAACAAGTTAAATGGTCTACTCATTGCTGCTTATGATAATGTATTCATCACCTTGTGTTCTTTCGTCATGTATCTATCCGAGCTTCCTACAATTTATGATGCCGTCCTTGAAGAGCAAATGAAGATAGCAGATTCAAAAGCAGAAGGAGAGTTGCTCAACTGGGGGGACATACAAAAAATGAAATATACATGGAACGTCGCATCTGAAGTGTTGAGATTGGAGCCGCCAAATCCTGGAACTTTTAGAGAGGCCATGACCGACTTTGTCTATGAAGGATATCTGATTCCTAAAGGAATGAAGTTATACTGGAGCGTCTTCTCGACACATAAAAACCCAGAGTACTTCCCAGATCCAAAAAAGTTTGACCCATCAAGGTTCGAAGGGGGAGGACCAGCTCCTTTTTCGTACGTCCCATTTGGAGGAGGACCTCGGATGTGCCCCGGAAGAGAATATGCTCGCTTTACGATTTTAGTTTTCATGCATAACTTGGTCACCAGATTTAGGTGGGAGAAGGTTTTTCCTAACGAGAAAATGGTGACGACCCCGTTTCTTCTTCCTACCAAAGGACTTCCAGTTCGCCTTTATCCTCATTCATCAACATCATCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

512

Amino Acids

58.49

Weight (kDa)

8.51

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	89 - 498	2.3e-51	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	2 cut(s)	562, 1160
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	4 cut(s)	302, 318, 442, 1151
AclWI	GGATC	5 cut(s)	115, 230, 617, 630, 1271
AcoI	YGGCCR	2 cut(s)	807, 889
AcuI	CTGAAG	2 cut(s)	101, 1152
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	981
AfaI	GTAC	5 cut(s)	230, 313, 488, 1268, 1334
AfiI	CCNNNNNNNGG	6 cut(s)	152, 562, 1160, 1346, 1428, 1490
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	6 cut(s)	73, 342, 715, 758, 1037, 1062
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	3 cut(s)	127, 700, 1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AleI	CACNNNNGTG	1 cut(s)	593
AloI	GAACNNNNNNTCC	2 cut(s)	1485, 1517
AluBI	AGCT	5 cut(s)	115, 135, 261, 1009, 1322
AluI	AGCT	5 cut(s)	115, 135, 261, 1009, 1322
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	5 cut(s)	115, 230, 617, 630, 1271
AlwNI	CAGNNNCTG	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	7 cut(s)	143, 160, 371, 564, 807, 889, 1176
ApeKI	GCWGC	8 cut(s)	252, 255, 258, 261, 286, 668, 815, 953
ArsI	GACNNNNNNTTYG	4 cut(s)	177, 209, 1485, 1517
AseI	ATTAAT	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	5 cut(s)	144, 565, 751, 1316, 1352
AsuC2I	CCSGG	1 cut(s)	1368
AsuHPI	GGTGA	5 cut(s)	265, 502, 967, 1411, 1474
AsuII	TTCGAA	1 cut(s)	1305
AsuNHI	GCTAGC	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	3 cut(s)	751, 1316, 1352
BaeGI	GKGCMC	1 cut(s)	1367
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	1234
BbvI	GCAGC	8 cut(s)	248, 264, 267, 270, 273, 680, 827, 940
BccI	CCATC	3 cut(s)	155, 398, 1303
BceAI	ACGGC	4 cut(s)	822, 828, 904, 1013
BcgI	CGANNNNNNTGC	4 cut(s)	146, 180, 679, 713
BciT130I	CCWGG	3 cut(s)	129, 702, 1161
BcnI	CCSGG	1 cut(s)	1368
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	5 cut(s)	32, 84, 644, 788, 824
BfoI	RGCGCY	1 cut(s)	405
BglII	AGATCT	1 cut(s)	820
BmcAI	AGTACT	2 cut(s)	230, 1268
Bme1390I	CCNGG	4 cut(s)	129, 702, 1161, 1368
Bme18I	GGWCC	3 cut(s)	751, 1316, 1352
BmeT110I	CYCGRG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	5 cut(s)	144, 565, 751, 1316, 1352
BmiI	GGNNCC	4 cut(s)	403, 624, 651, 1149
BmrFI	CCNGG	4 cut(s)	129, 702, 1161, 1368
BmrI	ACTGGG	1 cut(s)	1096
BmsI	GCATC	6 cut(s)	3, 493, 567, 740, 1015, 1136
BmtI	GCTAGC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	1096
BpiI	GAAGAC	1 cut(s)	1234
BplI	GAGNNNNNCTC	2 cut(s)	1065, 1097
BpmI	CTGGAG	1 cut(s)	1255
Bpu10I	CCTNAGC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	1305
BpuMI	CCSGG	1 cut(s)	1368
Bsa29I	ATCGAT	2 cut(s)	783, 793
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	3 cut(s)	17, 789, 795
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	297, 810, 1355, 1366
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 562, 1160, 1346, 1428, 1490
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	3 cut(s)	1091, 1238, 1499
Bse3DI	GCAATG	1 cut(s)	948
Bse8I	GATNNNNATC	3 cut(s)	17, 789, 795
BseBI	CCWGG	3 cut(s)	129, 702, 1161
BseCI	ATCGAT	2 cut(s)	783, 793
BseDI	CCNNGG	4 cut(s)	297, 810, 1355, 1366
BseGI	GGATG	3 cut(s)	508, 731, 1365
BseJI	GATNNNNATC	3 cut(s)	17, 789, 795
BseLI	CCNNNNNNNGG	6 cut(s)	152, 562, 1160, 1346, 1428, 1490
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	1091, 1238, 1499
BseRI	GAGGAG	5 cut(s)	232, 440, 662, 790, 1362
BseSI	GKGCMC	1 cut(s)	1367
BseX3I	CGGCCG	1 cut(s)	889
BseXI	GCAGC	8 cut(s)	248, 264, 267, 270, 273, 680, 827, 940
Bsh1285I	CGRYCG	1 cut(s)	892
BshFI	GGCC	7 cut(s)	145, 162, 373, 566, 809, 891, 1178
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	2 cut(s)	783, 793
BsiEI	CGRYCG	1 cut(s)	892
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	399, 1368
BsiWI	CGTACG	1 cut(s)	1332
BslFI	GGGAC	3 cut(s)	179, 1106, 1322
BslI	CCNNNNNNNGG	6 cut(s)	152, 562, 1160, 1346, 1428, 1490
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	3 cut(s)	179, 1106, 1322
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	7 cut(s)	145, 162, 373, 566, 809, 891, 1178
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	1305
Bsp1286I	GDGCHC	1 cut(s)	1367
Bsp143I	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
BspACI	CCGC	4 cut(s)	302, 318, 442, 1151
BspANI	GGCC	7 cut(s)	145, 162, 373, 566, 809, 891, 1178
BspCNI	CTCAG	1 cut(s)	149
BspDI	ATCGAT	2 cut(s)	783, 793
BspLI	GGNNCC	4 cut(s)	403, 624, 651, 1149
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	5 cut(s)	115, 230, 617, 630, 1271
BspQI	GCTCTTC	1 cut(s)	1032
BspT104I	TTCGAA	1 cut(s)	1305
BspT107I	GGYRCC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	3 cut(s)	1091, 1238, 1499
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	4 cut(s)	297, 810, 1355, 1366
BssMI	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	3 cut(s)	129, 702, 1161
Bst4CI	ACNGT	1 cut(s)	1536
Bst6I	CTCTTC	2 cut(s)	1032, 1366
BstACI	GRCGYC	1 cut(s)	402
BstAPI	GCANNNNNTGC	2 cut(s)	261, 635
BstBAI	YACGTR	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	1305
BstC8I	GCNNGC	4 cut(s)	85, 400, 673, 1384
BstDEI	CTNAG	1 cut(s)	136
BstDSI	CCRYGG	2 cut(s)	297, 810
BstEII	GGTNACC	1 cut(s)	1417
BstENI	CCTNNNNNAGG	1 cut(s)	1488
BstF5I	GGATG	3 cut(s)	508, 731, 1365
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	7 cut(s)	123, 225, 625, 787, 793, 823, 1279
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
BstMCI	CGRYCG	1 cut(s)	892
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 261, 635, 658, 728, 815, 923
BstNI	CCWGG	3 cut(s)	129, 702, 1161
BstPI	GGTNACC	1 cut(s)	1417
BstSCI	CCNGG	4 cut(s)	127, 700, 1159, 1366
BstSLI	GKGCMC	1 cut(s)	1367
BstSNI	TACGTA	1 cut(s)	490
BstV1I	GCAGC	8 cut(s)	248, 264, 267, 270, 273, 680, 827, 940
BstV2I	GAAGAC	1 cut(s)	1234
BstX2I	RGATCY	4 cut(s)	120, 622, 820, 1276
BstYI	RGATCY	4 cut(s)	120, 622, 820, 1276
BstZI	CGGCCG	1 cut(s)	889
Bsu15I	ATCGAT	2 cut(s)	783, 793
BsuRI	GGCC	7 cut(s)	145, 162, 373, 566, 809, 891, 1178
BsuTUI	ATCGAT	2 cut(s)	783, 793
BtgI	CCRYGG	2 cut(s)	297, 810
BtgZI	GCGATG	2 cut(s)	898, 907
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	508, 731, 1365
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	636, 1532
Cac8I	GCNNGC	4 cut(s)	85, 400, 673, 1384
CaiI	CAGNNNCTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	5 cut(s)	144, 565, 751, 1316, 1352
ClaI	ATCGAT	2 cut(s)	783, 793
CseI	GACGC	1 cut(s)	1228
Csp6I	GTAC	5 cut(s)	229, 312, 487, 1267, 1333
CviAII	CATG	6 cut(s)	366, 499, 994, 1116, 1180, 1405
CviQI	GTAC	5 cut(s)	229, 312, 487, 1267, 1333
DdeI	CTNAG	1 cut(s)	136
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	7 cut(s)	122, 224, 624, 786, 792, 822, 1278
DpnII	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
DraIII	CACNNNGTG	1 cut(s)	981
EaeI	YGGCCR	2 cut(s)	807, 889
EagI	CGGCCG	1 cut(s)	889
Eam1104I	CTCTTC	2 cut(s)	1032, 1366
EarI	CTCTTC	2 cut(s)	1032, 1366
EclXI	CGGCCG	1 cut(s)	889
Eco105I	TACGTA	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	162
Eco32I	GATATC	2 cut(s)	797, 1205
Eco47I	GGWCC	3 cut(s)	751, 1316, 1352
Eco52I	CGGCCG	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	101, 1152
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	1417
EcoNI	CCTNNNNNAGG	1 cut(s)	1488
EcoO109I	RGGNCCY	2 cut(s)	751, 1352
EcoO65I	GGTNACC	1 cut(s)	1417
EcoRII	CCWGG	3 cut(s)	127, 700, 1159
EcoRV	GATATC	2 cut(s)	797, 1205
EcoT22I	ATGCAT	1 cut(s)	1410
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
FaeI	CATG	6 cut(s)	369, 502, 997, 1119, 1183, 1408
FaqI	GGGAC	3 cut(s)	179, 1106, 1322
FatI	CATG	6 cut(s)	365, 498, 993, 1115, 1179, 1404
FauNDI	CATATG	2 cut(s)	66, 522
FblI	GTMKAC	1 cut(s)	943
FokI	GGATG	3 cut(s)	515, 718, 1372
FspBI	CTAG	5 cut(s)	32, 84, 644, 788, 824
GlaI	GCGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	1255
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	7 cut(s)	145, 162, 373, 566, 809, 891, 1178
HapII	CCGG	2 cut(s)	399, 1368
HgaI	GACGC	1 cut(s)	1228
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	369, 502, 997, 1119, 1183, 1408
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	8 cut(s)	293, 428, 438, 454, 495, 780, 1058, 1210
HpaII	CCGG	2 cut(s)	399, 1368
HphI	GGTGA	5 cut(s)	265, 502, 967, 1411, 1474
Hpy166II	GTNNAC	4 cut(s)	273, 312, 361, 944
Hpy188I	TCNGA	7 cut(s)	120, 453, 541, 1006, 1132, 1209, 1359
Hpy188III	TCNNGA	5 cut(s)	745, 788, 824, 848, 1246
Hpy8I	GTNNAC	4 cut(s)	273, 312, 361, 944
Hpy99I	CGWCG	2 cut(s)	890, 1127
HpyAV	CCTTC	9 cut(s)	152, 517, 595, 742, 895, 1064, 1193, 1301, 1432
HpyCH4III	ACNGT	1 cut(s)	1536
HpyCH4IV	ACGT	6 cut(s)	489, 517, 528, 615, 1122, 1335
HpyCH4V	TGCA	4 cut(s)	264, 580, 668, 1408
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 261, 635, 658, 728, 815, 923
HpyF3I	CTNAG	1 cut(s)	136
HpySE526I	ACGT	6 cut(s)	489, 517, 528, 615, 1122, 1335
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	6 cut(s)	369, 502, 997, 1119, 1183, 1408
HspAI	GCGC	1 cut(s)	402
KasI	GGCGCC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
LguI	GCTCTTC	1 cut(s)	1032
LmnI	GCTCC	4 cut(s)	649, 1147, 1236, 1327
Lsp1109I	GCAGC	8 cut(s)	248, 264, 267, 270, 273, 680, 827, 940
LweI	GCATC	6 cut(s)	3, 493, 567, 740, 1015, 1136
MaeI	CTAG	5 cut(s)	32, 84, 644, 788, 824
MaeII	ACGT	6 cut(s)	489, 517, 528, 615, 1122, 1335
MaeIII	GTNAC	2 cut(s)	1417, 1462
MalI	GATC	7 cut(s)	122, 224, 624, 786, 792, 822, 1278
MboI	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
MboII	GAAGA	8 cut(s)	598, 770, 1049, 1060, 1234, 1383, 1469, 1472
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	4 cut(s)	120, 622, 820, 1276
MhlI	GDGCHC	1 cut(s)	1367
MluCI	AATT	4 cut(s)	472, 654, 863, 1017
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	3 cut(s)	432, 437, 448
MmeI	TCCRAC	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	1410
MroNI	GCCGGC	1 cut(s)	398
MseI	TTAA	3 cut(s)	611, 843, 935
MslI	CAYNNNNRTG	3 cut(s)	593, 595, 1534
MspA1I	CMGCKG	2 cut(s)	261, 320
MspI	CCGG	2 cut(s)	399, 1368
MspR9I	CCNGG	4 cut(s)	129, 702, 1161, 1368
MunI	CAATTG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	3 cut(s)	129, 702, 1161
MwoI	GCNNNNNNNGC	7 cut(s)	258, 261, 635, 658, 728, 815, 923
NaeI	GCCGGC	1 cut(s)	400
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	1368
NdeI	CATATG	2 cut(s)	66, 522
NdeII	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
NgoMIV	GCCGGC	1 cut(s)	398
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	6 cut(s)	369, 502, 997, 1119, 1183, 1408
NlaIV	GGNNCC	4 cut(s)	403, 624, 651, 1149
NmuCI	GTSAC	2 cut(s)	1417, 1462
NsiI	ATGCAT	1 cut(s)	1410
NspV	TTCGAA	1 cut(s)	1305
OliI	CACNNNNGTG	1 cut(s)	593
PceI	AGGCCT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	1032
PctI	GAATGC	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	400
PfeI	GAWTC	5 cut(s)	293, 495, 780, 1058, 1210
Pfl23II	CGTACG	1 cut(s)	1332
PflFI	GACNNNGTC	1 cut(s)	1190
PflMI	CCANNNNNTGG	2 cut(s)	562, 1160
PfoI	TCCNGGA	1 cut(s)	1159
PleI	GAGTC	3 cut(s)	432, 436, 448
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	3 cut(s)	432, 436, 448
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	2 cut(s)	751, 1352
PshBI	ATTAAT	1 cut(s)	843
Psp5II	RGGWCCY	2 cut(s)	751, 1352
Psp6I	CCWGG	3 cut(s)	127, 700, 1159
PspEI	GGTNACC	1 cut(s)	1417
PspGI	CCWGG	3 cut(s)	127, 700, 1159
PspLI	CGTACG	1 cut(s)	1332
PspN4I	GGNNCC	4 cut(s)	403, 624, 651, 1149
PspPI	GGNCC	5 cut(s)	144, 565, 751, 1316, 1352
PspPPI	RGGWCCY	2 cut(s)	751, 1352
PstNI	CAGNNNCTG	1 cut(s)	261
PsuI	RGATCY	4 cut(s)	120, 622, 820, 1276
PsyI	GACNNNGTC	1 cut(s)	1190
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	5 cut(s)	230, 313, 488, 1268, 1334
RsaNI	GTAC	5 cut(s)	229, 312, 487, 1267, 1333
RseI	CAYNNNNRTG	3 cut(s)	593, 595, 1534
SapI	GCTCTTC	1 cut(s)	1032
SaqAI	TTAA	3 cut(s)	611, 843, 935
Sau3AI	GATC	7 cut(s)	120, 222, 622, 784, 790, 820, 1276
Sau96I	GGNCC	5 cut(s)	144, 565, 751, 1316, 1352
ScaI	AGTACT	2 cut(s)	230, 1268
SchI	GAGTC	3 cut(s)	432, 437, 448
ScrFI	CCNGG	4 cut(s)	129, 702, 1161, 1368
SduI	GDGCHC	1 cut(s)	1367
SfaNI	GCATC	6 cut(s)	3, 493, 567, 740, 1015, 1136
SfoI	GGCGCC	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	1305
SinI	GGWCC	3 cut(s)	751, 1316, 1352
SmiMI	CAYNNNNRTG	3 cut(s)	593, 595, 1534
SnaBI	TACGTA	1 cut(s)	490
Sse9I	AATT	4 cut(s)	472, 654, 863, 1017
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	4 cut(s)	302, 318, 442, 1151
SspDI	GGCGCC	1 cut(s)	401
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	5 cut(s)	32, 84, 644, 788, 824
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	127, 700, 1159, 1366
TaaI	ACNGT	1 cut(s)	1536
TaiI	ACGT	6 cut(s)	492, 520, 531, 618, 1125, 1338
TaqI	TCGA	7 cut(s)	436, 727, 783, 793, 799, 1247, 1305
TaqII	GACCGA	1 cut(s)	1199
TasI	AATT	4 cut(s)	472, 654, 863, 1017
TatI	WGTACW	3 cut(s)	228, 311, 1266
TauI	GCSGC	2 cut(s)	320, 1153
TfiI	GAWTC	5 cut(s)	293, 495, 780, 1058, 1210
Tru1I	TTAA	3 cut(s)	611, 843, 935
Tru9I	TTAA	3 cut(s)	611, 843, 935
TscAI	CASTG	2 cut(s)	636, 1539
TseFI	GTSAC	2 cut(s)	1417, 1462
TseI	GCWGC	8 cut(s)	252, 255, 258, 261, 286, 668, 815, 953
Tsp45I	GTSAC	2 cut(s)	1417, 1462
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	636, 1539
Tth111I	GACNNNGTC	1 cut(s)	1190
Van91I	CCANNNNNTGG	2 cut(s)	562, 1160
VpaK11BI	GGWCC	3 cut(s)	751, 1316, 1352
VspI	ATTAAT	1 cut(s)	843
XagI	CCTNNNNNAGG	1 cut(s)	1488
XbaI	TCTAGA	2 cut(s)	787, 823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	943
XspI	CTAG	5 cut(s)	32, 84, 644, 788, 824
ZrmI	AGTACT	2 cut(s)	230, 1268
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.