Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

52133 .. 53957

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggaagaggaacatcatcaccctcttcttcaagaagacgccatttcttccgatgattcgcgcttgaaacagctcggttacaagcaagaactcagccgcaatctctcggcaatagcaaatttctcagtgactttctccatcgtctctgtcctcaccggtctgagcacgacgtttggtattggtctcacatatggtgggaccataacgatggtgtacgggtggccggtggtggggatgctgacgctggtggtgggactatcgatggctgagatttgctccgcgtacccgacttccggtggtctctacttctggagtgccaaactctctggcgatcgttggggacctttggcttcttggctcactggctgccttttgaacccggcccatccagcccatcagttaacaagatccaacgggctaacccgctcctacatccctgcccagagtccatatatgaagtgggtctcaacaattgtcaagaagtccagaaccaataatggggctttgactagcttctacaataatggtccaaaaccaaatgatgacatatttagttacatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

188

Amino Acids

20.56

Weight (kDa)

7.8

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	426
AccII	CGCG	2 cut(s)	61, 281
AciI	CCGC	3 cut(s)	97, 279, 424
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	215, 284
AfiI	CCNNNNNNNGG	3 cut(s)	230, 293, 498
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	32, 67, 376
AluBI	AGCT	2 cut(s)	73, 513
AluI	AGCT	2 cut(s)	73, 513
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	4 cut(s)	148, 188, 305, 469
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	221, 381
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	118
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	198, 341, 382, 527
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	11, 145
AvaII	GGWCC	3 cut(s)	198, 341, 527
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	5 cut(s)	146, 202, 256, 393, 402
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	4 cut(s)	148, 188, 305, 469
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	2 cut(s)	97, 367
BlsI	GCNGC	2 cut(s)	98, 368
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	3 cut(s)	198, 341, 527
BmgT120I	GGNCC	4 cut(s)	198, 341, 382, 527
BmiI	GGNNCC	2 cut(s)	199, 342
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	3 cut(s)	188, 305, 469
BsaWI	WCCGGW	2 cut(s)	155, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 293, 498
Bse118I	RCCGGY	2 cut(s)	155, 223
Bse1I	ACTGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	260
BseGI	GGATG	3 cut(s)	240, 385, 432
BseLI	CCNNNNNNNGG	3 cut(s)	230, 293, 498
BseMII	CTCAG	4 cut(s)	106, 138, 152, 258
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	61, 281
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	223, 383
BshTI	ACCGGT	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	4 cut(s)	156, 224, 294, 380
BslFI	GGGAC	3 cut(s)	211, 267, 354
BslI	CCNNNNNNNGG	3 cut(s)	230, 293, 498
BsmAI	GTCTC	4 cut(s)	148, 188, 305, 469
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	3 cut(s)	211, 267, 354
BsnI	GGCC	2 cut(s)	223, 383
Bso31I	GGTCTC	3 cut(s)	188, 305, 469
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	331, 407
BspACI	CCGC	3 cut(s)	97, 279, 424
BspANI	GGCC	2 cut(s)	223, 383
BspCNI	CTCAG	4 cut(s)	105, 137, 153, 259
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	61, 281
BspHI	TCATGA	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	199, 342
BspPI	GGATC	1 cut(s)	402
BspTNI	GGTCTC	3 cut(s)	188, 305, 469
BsrBI	CCGCTC	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	155, 223
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	2 cut(s)	155, 223
BssMI	GATC	2 cut(s)	331, 407
BssNI	GRCGYC	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	92, 124, 161, 267
BstF5I	GGATG	3 cut(s)	240, 385, 432
BstFNI	CGCG	2 cut(s)	61, 281
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	334, 410
BstMAI	GTCTC	4 cut(s)	148, 188, 305, 469
BstMBI	GATC	2 cut(s)	331, 407
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	61, 281
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	223, 383
BsuTUI	ATCGAT	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	240, 385, 432
BtsIMutI	CAGTG	2 cut(s)	132, 360
CciI	TCATGA	1 cut(s)	563
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	2 cut(s)	155, 223
Cfr13I	GGNCC	4 cut(s)	198, 341, 382, 527
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	2 cut(s)	47, 250
Csp6I	GTAC	2 cut(s)	214, 283
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	564
CviQI	GTAC	2 cut(s)	214, 283
DdeI	CTNAG	4 cut(s)	92, 124, 161, 267
DpnI	GATC	2 cut(s)	333, 409
DpnII	GATC	2 cut(s)	331, 407
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco31I	GGTCTC	3 cut(s)	188, 305, 469
Eco47I	GGWCC	3 cut(s)	198, 341, 527
EcoO109I	RGGNCCY	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	567
FaiI	YATR	8 cut(s)	190, 192, 203, 451, 453, 455, 548, 565
FaqI	GGGAC	3 cut(s)	211, 267, 354
FatI	CATG	1 cut(s)	563
FauI	CCCGC	1 cut(s)	431
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	97, 367
FokI	GGATG	3 cut(s)	247, 372, 419
Fsp4HI	GCNGC	2 cut(s)	97, 367
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	97, 367
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	223, 383
HapII	CCGG	4 cut(s)	156, 224, 294, 380
HgaI	GACGC	2 cut(s)	47, 250
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	567
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	56, 445
HpaI	GTTAAC	1 cut(s)	402
HpaII	CCGG	4 cut(s)	156, 224, 294, 380
HphI	GGTGA	2 cut(s)	11, 145
Hpy166II	GTNNAC	2 cut(s)	214, 402
Hpy188I	TCNGA	2 cut(s)	52, 162
Hpy188III	TCNNGA	5 cut(s)	32, 310, 478, 486, 564
Hpy8I	GTNNAC	2 cut(s)	214, 402
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	92, 124, 161, 267
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	567
HspAI	GCGC	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	331, 407
LmnI	GCTCC	2 cut(s)	281, 431
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	77, 127, 554
MalI	GATC	2 cut(s)	333, 409
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	2 cut(s)	331, 407
MboII	GAAGA	5 cut(s)	17, 17, 20, 39, 47
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	2 cut(s)	118, 471
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	33, 161
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	4 cut(s)	156, 224, 294, 380
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	2 cut(s)	61, 281
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	331, 407
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	2 cut(s)	199, 342
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	98, 368
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	199, 342
PspPI	GGNCC	4 cut(s)	198, 341, 382, 527
PspPPI	RGGWCCY	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	215, 284
RsaNI	GTAC	2 cut(s)	214, 283
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	2 cut(s)	97, 367
Sau3AI	GATC	2 cut(s)	331, 407
Sau96I	GGNCC	4 cut(s)	198, 341, 382, 527
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	4 cut(s)	75, 173, 346, 515
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	3 cut(s)	198, 341, 527
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	118, 471
SsiI	CCGC	3 cut(s)	97, 279, 424
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	118, 471
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	2 cut(s)	132, 367
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	470, 552
TspRI	CASTG	2 cut(s)	132, 367
VpaK11BI	GGWCC	3 cut(s)	198, 341, 527
XapI	RAATTY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.