Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

41440761 .. 41440958

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCGAGGGGGAATTGGGGAGGAAGACGAGGATGAGGAAGAGGAGTATAGGGCTGGTGAATGGGAGCATAAGCGTGGCGCACTAGCTTCACGCTTTGGTTATGAACAAGTGCATCAAGATCGTTATTGGTTCCGGTTGAGCCTGCCGGCGTCAGTGGACAACTCAGGGCTATGCTGCTTGTTGATGTCTATATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

65

Amino Acids

7.57

Weight (kDa)

4.6

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	149
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	145
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	133, 146
Bsp143I	GATC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	143, 147
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	143, 147
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	145
CseI	GACGC	1 cut(s)	138
CviJI	RGCY	4 cut(s)	53, 86, 141, 169
CviKI_1	RGCY	4 cut(s)	53, 86, 141, 169
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
FaiI	YATR	5 cut(s)	48, 69, 102, 172, 191
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	175
HapII	CCGG	2 cut(s)	133, 146
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	133, 146
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	39, 146, 150, 155, 159
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	35, 50
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	4 cut(s)	13, 22, 28, 34
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	2 cut(s)	133, 146
NaeI	GCCGGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	118
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	83
TasI	AATT	1 cut(s)	12
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	159
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.