Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Forward (+)

36227198 .. 36228143

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1162100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATCACCAAGCTTTGGAAATGGATTCCGGCGAAAAGCGGCTCAATGAGCTTGGATACAAGCAAGAACTCAGAAGGGAAATGTCATTGTTCAAGACGATGGCAATAACATTTTCGTGCATGTCGGTGTTCACTGGTACGCCTCTCTACGGCCAAAGTCTGCGCTATGCTGGTCCGGCACCCCTAATATGGGGTTGGATTGTTGTCACATTCTTCACATGGTTTGTCGGAATTGCCATGGCTGAGATATGCTCCTCTTTTCCGACCACAGGTTCTCTTTATTTTTGGGCTGCTCATCTGGCCGGACCCATGTGGGGGCCATTCGCGTCGTGGTGCTGCGCTTGGCTTGAAATCATCGGTCTGGTTTCCGCAATAGGTGCTCAGGCATATTCCGCATCACAAGCGTTGCAGATGGTCATTCTTTTAGCCACAGGGACGAACAAGGGCGGAGGCTATTTTGCATCGAGGGGTGTATTCCTGTGCATGTATATCGGTCTGACCATCATATGGGCAGTGCTCAATACATTTGCATTACAAGTGATAGCATTTCTCAACATAATTTCGATATGGTGGCAGGTGAGCCCTTCCAACTCCTTTGTTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

203

Amino Acids

22.35

Weight (kDa)

7.62

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	29 - 192	3.5e-12	Amino acid permease
AA_permease	PF00324	51 - 130	7.7e-08	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	178
AccB7I	CCANNNNNTGG	2 cut(s)	16, 507
AccII	CGCG	1 cut(s)	326
AciI	CCGC	4 cut(s)	40, 369, 393, 447
AcoI	YGGCCR	2 cut(s)	151, 300
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	8 cut(s)	16, 149, 189, 190, 269, 314, 315, 507
AgsI	TTSAA	2 cut(s)	94, 350
AluBI	AGCT	2 cut(s)	14, 52
AluI	AGCT	2 cut(s)	14, 52
Alw21I	GWGCWC	2 cut(s)	382, 519
AoxI	GGCC	3 cut(s)	151, 300, 317
ApeKI	GCWGC	2 cut(s)	290, 336
AspLEI	GCGC	2 cut(s)	165, 341
AspS9I	GGNCC	3 cut(s)	173, 305, 317
AsuHPI	GGTGA	1 cut(s)	589
AvaII	GGWCC	2 cut(s)	173, 305
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	382, 519
BbvI	GCAGC	2 cut(s)	277, 323
BccI	CCATC	3 cut(s)	94, 406, 509
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciVI	GTATCC	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	41, 291, 337
BlsI	GCNGC	3 cut(s)	42, 292, 338
Bme18I	GGWCC	2 cut(s)	173, 305
BmgT120I	GGNCC	3 cut(s)	173, 305, 317
BmiI	GGNNCC	3 cut(s)	180, 307, 318
BmsI	GCATC	2 cut(s)	404, 470
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bpu10I	CCTNAGC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	8 cut(s)	16, 149, 189, 190, 269, 314, 315, 507
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	8 cut(s)	16, 149, 189, 190, 269, 314, 315, 507
BseMII	CTCAG	3 cut(s)	85, 234, 395
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	277, 323
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	3 cut(s)	153, 302, 319
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	382, 519
BsiSI	CCGG	3 cut(s)	30, 176, 303
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	8 cut(s)	16, 149, 189, 190, 269, 314, 315, 507
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	153, 302, 319
Bsp1286I	GDGCHC	3 cut(s)	382, 519, 584
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	4 cut(s)	40, 369, 393, 447
BspANI	GGCC	3 cut(s)	153, 302, 319
BspCNI	CTCAG	3 cut(s)	84, 235, 394
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	180, 307, 318
BspMI	ACCTGC	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	71, 243, 381
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	165, 341
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 176, 299, 377, 392, 401
BstNSI	RCATGY	2 cut(s)	124, 487
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	277, 323
BsuI	GTATCC	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	153, 302, 319
BtgI	CCRYGG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	132, 519
BveI	ACCTGC	1 cut(s)	565
CfoI	GCGC	2 cut(s)	165, 341
Cfr13I	GGNCC	3 cut(s)	173, 305, 317
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	5 cut(s)	121, 219, 238, 310, 484
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	71, 243, 381
EaeI	YGGCCR	2 cut(s)	151, 300
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	173, 305
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	5 cut(s)	124, 222, 241, 313, 487
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	120, 218, 237, 309, 483
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	41, 291, 337
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	41, 291, 337
GlaI	GCGC	2 cut(s)	164, 340
GluI	GCNGC	3 cut(s)	41, 291, 337
HaeIII	GGCC	3 cut(s)	153, 302, 319
HapII	CCGG	3 cut(s)	30, 176, 303
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	2 cut(s)	165, 341
Hin1II	CATG	5 cut(s)	124, 222, 241, 313, 487
Hin6I	GCGC	2 cut(s)	163, 339
HinP1I	GCGC	2 cut(s)	163, 339
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	4, 26
HpaII	CCGG	3 cut(s)	30, 176, 303
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	74, 230, 264, 498
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	69, 594
HpyCH4V	TGCA	6 cut(s)	120, 409, 461, 483, 530, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 176, 299, 377, 392, 401
HpyF3I	CTNAG	3 cut(s)	71, 243, 381
Hsp92II	CATG	5 cut(s)	124, 222, 241, 313, 487
HspAI	GCGC	2 cut(s)	163, 339
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	277, 323
LweI	GCATC	2 cut(s)	404, 470
MaeIII	GTNAC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	205
MhlI	GDGCHC	3 cut(s)	382, 519, 584
MluCI	AATT	2 cut(s)	231, 558
MmeI	TCCRAC	3 cut(s)	176, 208, 287
MnlI	CCTC	4 cut(s)	153, 265, 443, 459
MslI	CAYNNNNRTG	2 cut(s)	115, 125
MspI	CCGG	3 cut(s)	30, 176, 303
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	49, 176, 299, 377, 392, 401
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	506
NlaIII	CATG	5 cut(s)	124, 222, 241, 313, 487
NlaIV	GGNNCC	3 cut(s)	180, 307, 318
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	124, 487
PaqCI	CACCTGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	4, 26
PflMI	CCANNNNNTGG	2 cut(s)	16, 507
PkrI	GCNGC	3 cut(s)	42, 292, 338
PspN4I	GGNNCC	3 cut(s)	180, 307, 318
PspPI	GGNCC	3 cut(s)	173, 305, 317
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	2 cut(s)	115, 125
SatI	GCNGC	3 cut(s)	41, 291, 337
Sau96I	GGNCC	3 cut(s)	173, 305, 317
SduI	GDGCHC	3 cut(s)	382, 519, 584
SetI	ASST	5 cut(s)	16, 54, 274, 379, 579
SfaNI	GCATC	2 cut(s)	404, 470
SinI	GGWCC	2 cut(s)	173, 305
SmiMI	CAYNNNNRTG	2 cut(s)	115, 125
Sse9I	AATT	2 cut(s)	231, 558
SsiI	CCGC	4 cut(s)	40, 369, 393, 447
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	2 cut(s)	464, 563
TaqII	GACCGA	2 cut(s)	347, 482
TasI	AATT	2 cut(s)	231, 558
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	4, 26
TscAI	CASTG	2 cut(s)	139, 519
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	290, 336
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	139, 519
Van91I	CCANNNNNTGG	2 cut(s)	16, 507
VpaK11BI	GGWCC	2 cut(s)	173, 305
XceI	RCATGY	2 cut(s)	124, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.