Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

27914919 .. 27916101

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAGAGGAAGAAGGCCCTTCTTATCATCACCCTCTTCTTCAAGACAGAGACGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCAGTCCTCACTGGTCTAAGCACGACGTTTGGTATTGGCCTGACATATGGTGGGACGATTACGATGGTGTACGGGTGGCCGGTGGTGGGGATGTTGACGCTGGTGGTGGGACTATCGATGGCGGAGATTTGCTCGGCGTACCCGACTTCCGGTGGACTATACTTCTGGAGCGCCAAACTTTGTGGCAATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGCAGTCAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

132

Amino Acids

14.12

Weight (kDa)

5.16

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	46 - 126	9.4e-10	Amino acid permease
AA_permease	PF00324	57 - 125	2.9e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	76
AciI	CCGC	2 cut(s)	112, 281
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	230, 299
AfiI	CCNNNNNNNGG	2 cut(s)	245, 308
AgsI	TTSAA	2 cut(s)	44, 82
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	45, 163
AoxI	GGCC	3 cut(s)	16, 196, 236
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	78, 332
AspS9I	GGNCC	2 cut(s)	17, 356
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	3 cut(s)	161, 217, 271
BcoDI	GTCTC	2 cut(s)	45, 163
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	2 cut(s)	112, 382
BlsI	GCNGC	2 cut(s)	113, 383
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	17, 356
BmiI	GGNNCC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 308
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	175, 382
BseCI	ATCGAT	1 cut(s)	275
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	245, 308
BseMII	CTCAG	3 cut(s)	121, 153, 174
BseNI	ACTGG	2 cut(s)	175, 382
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	18, 198, 238
BshVI	ATCGAT	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	239, 309
BslFI	GGGAC	3 cut(s)	226, 282, 369
BslI	CCNNNNNNNGG	2 cut(s)	245, 308
BsmAI	GTCTC	2 cut(s)	45, 163
BsmBI	CGTCTC	2 cut(s)	45, 163
BsmFI	GGGAC	3 cut(s)	226, 282, 369
BsnI	GGCC	3 cut(s)	18, 198, 238
BspACI	CCGC	2 cut(s)	112, 281
BspANI	GGCC	3 cut(s)	18, 198, 238
BspCNI	CTCAG	3 cut(s)	120, 152, 173
BspDI	ATCGAT	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	175, 382
BssAI	RCCGGY	1 cut(s)	238
BssNI	GRCGYC	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	107, 139, 160, 176
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	78, 332
BstMAI	GTCTC	2 cut(s)	45, 163
BstSFI	CTRYAG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	18, 198, 238
BsuTUI	ATCGAT	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	147, 168, 375
CfoI	GCGC	2 cut(s)	78, 332
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	17, 356
ClaI	ATCGAT	1 cut(s)	275
CseI	GACGC	2 cut(s)	62, 265
Csp6I	GTAC	2 cut(s)	229, 298
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviJI	RGCY	8 cut(s)	18, 88, 111, 198, 238, 365, 373, 381
CviKI_1	RGCY	8 cut(s)	18, 88, 111, 198, 238, 365, 373, 381
CviQI	GTAC	2 cut(s)	229, 298
DdeI	CTNAG	4 cut(s)	107, 139, 160, 176
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	17, 356
Esp3I	CGTCTC	2 cut(s)	45, 163
FaiI	YATR	3 cut(s)	205, 207, 319
FaqI	GGGAC	3 cut(s)	226, 282, 369
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	112, 382
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	112, 382
GlaI	GCGC	2 cut(s)	77, 331
GluI	GCNGC	2 cut(s)	112, 382
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	18, 198, 238
HapII	CCGG	2 cut(s)	239, 309
HgaI	GACGC	2 cut(s)	62, 265
HhaI	GCGC	2 cut(s)	78, 332
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	76, 330
HinP1I	GCGC	2 cut(s)	76, 330
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	239, 309
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	229, 255, 314
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	44, 325
Hpy8I	GTNNAC	3 cut(s)	229, 255, 314
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	8, 30
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	384
HpyF3I	CTNAG	4 cut(s)	107, 139, 160, 176
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	2 cut(s)	76, 330
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	7 cut(s)	156, 212, 245, 252, 310, 322, 363
Lsp1109I	GCAGC	1 cut(s)	368
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	92, 142
MboII	GAAGA	5 cut(s)	17, 23, 29, 32, 54
MluCI	AATT	1 cut(s)	133
MnlI	CCTC	2 cut(s)	45, 176
MspI	CCGG	2 cut(s)	239, 309
MvnI	CGCG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	357
NmeAIII	GCCGAG	2 cut(s)	101, 272
NmuCI	GTSAC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	113, 383
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	17, 356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	230, 299
RsaNI	GTAC	2 cut(s)	229, 298
SatI	GCNGC	2 cut(s)	112, 382
Sau96I	GGNCC	2 cut(s)	17, 356
SetI	ASST	3 cut(s)	90, 188, 361
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	356
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	2 cut(s)	112, 281
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	133
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	3 cut(s)	147, 175, 382
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	142
TspRI	CASTG	3 cut(s)	147, 175, 382
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.