Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

55659480 .. 55660629

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG334000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTCAAATCAAGGATACCATGGACGAGGAACATCATCACCCTCTTCTTCAAGAAGACGCCATTTCTTCCGATGATTCGCGCTTGAAACAGCTCGGTTACAAGCAAGAACTCAGCCGCAATCTCTCGGCAATAGCAAATTTCTCAGTGACTTTCTCCATCGTCTCTGTCCTCACCGGTCTGAGCACGACGTTTGGTATTGGTCTCACATATGGTGGGACCATAACGATGGTGTACGGGTGGCCGGTGGTGGGGATGCTGACGCTGGTGGTGGGACTATCGATGGCTGAGATTTGCTCCGCGTACCCGACTTCCGGTGGTCTCTACTTCTGGAGTGCCAAACTCTCTGGCGATCGTTGGGGACCTTTGGCTTCTTGGCTCACTGGCTGGTACGCATTTTTATTTTCTGATTATATCATTTTAGGCTTTAACATGCCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

147

Amino Acids

16.19

Weight (kDa)

4.9

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	48 - 135	1.6e-09	Amino acid permease
AA_permease	PF00324	59 - 133	4.6e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 302
AciI	CCGC	2 cut(s)	118, 300
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	3 cut(s)	236, 305, 392
AfiI	CCNNNNNNNGG	2 cut(s)	251, 314
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	53, 88
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	3 cut(s)	169, 209, 326
AoxI	GGCC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	139
AsiGI	ACCGGT	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	219, 362
AsuHPI	GGTGA	2 cut(s)	32, 166
AvaII	GGWCC	2 cut(s)	219, 362
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	3 cut(s)	167, 223, 277
BciVI	GTATCC	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	169, 209, 326
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	219, 362
BmgT120I	GGNCC	2 cut(s)	219, 362
BmiI	GGNNCC	2 cut(s)	220, 363
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	2 cut(s)	209, 326
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	176, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 314
Bse118I	RCCGGY	2 cut(s)	176, 244
Bse1I	ACTGG	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	251, 314
BseMII	CTCAG	4 cut(s)	127, 159, 173, 279
BseNI	ACTGG	1 cut(s)	388
Bsh1236I	CGCG	2 cut(s)	82, 302
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	244
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	177, 245, 315
BslFI	GGGAC	3 cut(s)	232, 288, 375
BslI	CCNNNNNNNGG	2 cut(s)	251, 314
BsmAI	GTCTC	3 cut(s)	169, 209, 326
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	3 cut(s)	232, 288, 375
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	2 cut(s)	209, 326
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	118, 300
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	4 cut(s)	126, 158, 174, 280
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	2 cut(s)	82, 302
BspLI	GGNNCC	2 cut(s)	220, 363
BspTNI	GGTCTC	2 cut(s)	209, 326
BsrFI	RCCGGY	2 cut(s)	176, 244
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	2 cut(s)	176, 244
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	113, 145, 182, 288
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	82, 302
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	3 cut(s)	169, 209, 326
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	436
BstUI	CGCG	2 cut(s)	82, 302
BstV2I	GAAGAC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	153, 381
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	2 cut(s)	176, 244
Cfr13I	GGNCC	2 cut(s)	219, 362
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	2 cut(s)	68, 271
Csp6I	GTAC	3 cut(s)	235, 304, 391
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	2 cut(s)	22, 433
CviJI	RGCY	8 cut(s)	94, 117, 244, 287, 371, 379, 387, 426
CviKI_1	RGCY	8 cut(s)	94, 117, 244, 287, 371, 379, 387, 426
CviQI	GTAC	3 cut(s)	235, 304, 391
DdeI	CTNAG	4 cut(s)	113, 145, 182, 288
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	209, 326
Eco47I	GGWCC	2 cut(s)	219, 362
EcoO109I	RGGNCCY	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	2 cut(s)	25, 436
FaiI	YATR	6 cut(s)	23, 211, 213, 224, 414, 434
FaqI	GGGAC	3 cut(s)	232, 288, 375
FatI	CATG	2 cut(s)	21, 432
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	118
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	3 cut(s)	177, 245, 315
HgaI	GACGC	2 cut(s)	68, 271
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	25, 436
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	4, 77
HpaII	CCGG	3 cut(s)	177, 245, 315
HphI	GGTGA	2 cut(s)	32, 166
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	73, 183, 409
Hpy188III	TCNNGA	2 cut(s)	53, 331
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	113, 145, 182, 288
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	25, 436
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	8 cut(s)	190, 251, 258, 316, 328, 333, 369, 373
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	98, 148
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	4 cut(s)	38, 41, 60, 68
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	3 cut(s)	22, 54, 182
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	3 cut(s)	177, 245, 315
MvnI	CGCG	2 cut(s)	82, 302
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	25, 436
NlaIV	GGNNCC	2 cut(s)	220, 363
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	119
Ple19I	CGATCG	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	220, 363
PspPI	GGNCC	2 cut(s)	219, 362
PspPPI	RGGWCCY	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	236, 305, 392
RsaNI	GTAC	3 cut(s)	235, 304, 391
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	219, 362
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	96, 194, 367
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	219, 362
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	118, 300
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	153, 388
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspRI	CASTG	2 cut(s)	153, 388
VpaK11BI	GGWCC	2 cut(s)	219, 362
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.