Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002377

Physical Location & Seq

Genomic Coordinates Reverse (-)

44646980 .. 44649233

Gene Structure 2254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGACACTCTTCACCGGAATCACTCCTTTGTATGGTTCTAGCCTTGTATATGCAAGTCCTACAAGCCTTGTGTGGGGTTGGGTGGTAGCATCATTTTTCACCTGGTTTGTTGGACTTGCCATGGTAGGGATCTGCTCTTCTTTCCCGATTGCAAGAATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

54

Amino Acids

5.86

Weight (kDa)

7.95

Isoelectric Point (pI)

17.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01170 AT2G01170
fragaria_vesca	FvH4_4g26580 FvH4_4g26581
malus_domestica	MD00G1162100.v1.1 MD16G1036200.v1.1 MD16G1036300.v1.1
prunus_persica	Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1 Prupe.1G317800_v2.0.a1
pyrus_communis	pycom16g03100 pycom16g03110
rosa_chinensis	RchiOBHm_Chr1g0351381 RchiOBHm_Chr4g0434221 RchiOBHm_Chr4g0434231 RchiOBHm_Chr7g0202541 RchiOBHm_Chr7g0243741
rosa_laevigata	RLG00000006690
rosa_multiflora	Rmu_sc0000459.1_g000012
rosa_roxburghii	Rroxscaffold_5G00375610 Rroxscaffold_5G00375620
rosa_rugosa	Rorug02G0460400 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275500 Rorug04G0275600
rosa_samantha	Rh1AG013600 Rh1BG005200 Rh1BG065300 Rh4AG330300 Rh4AG330400 Rh4BG247000 Rh4BG337900 Rh4CG353300 Rh4DG333900 Rh4DG334000 Rh7AG476100
rosa_wichuraiana	Rw4G028650 Rw4G028660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
AjnI	CCWGG	1 cut(s)	101
AlwI	GGATC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	4, 91
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 73, 126
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	32, 73, 126
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	14, 142
BstDSI	CCRYGG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	2 cut(s)	42, 66
CviKI_1	RGCY	2 cut(s)	42, 66
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	14, 142
EarI	CTCTTC	2 cut(s)	14, 142
Eco130I	CCWWGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	33, 49, 51, 122, 161, 163
FatI	CATG	1 cut(s)	120
FspBI	CTAG	1 cut(s)	39
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	4, 91
Hpy188III	TCNNGA	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	53, 152
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	3 cut(s)	28, 88, 115
LweI	GCATC	1 cut(s)	98
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	91
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	1 cut(s)	104
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	120
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.