RLG00000006692

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014096
Physical Location & Seq
Forward (+)
9680863 .. 9683729
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006692

Sequence Viewer

Length: 720 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTACAGCCTCTCAATGTCATCTCCCTCGACGACGGCGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAAAGGTTGATGACAGTGTGAAGGTTACAGTTATTGAGGAAGACGACGAGGACTGGTTGCTTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAGCTGGCATCAGCTGAGTCGGCTGAAAATGTGCTCCGAGCTGTGGAGGAGTCTGTGAGACGAGAACTTCTGAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCGCCACCTCCAAAGCCCCAAGTTGAAAGAAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGCTTGACATTCAGAGTTTAATTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTAATGAACGAGAAGGATCATTTGGTAATCAACTTAACACTTTTCGCCCTTTGTTGAATTCAGGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

240

Amino Acids

26.8

Weight (kDa)

4.64

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 142 - 209 7.7e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 493
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 597
AciI CCGC 3 cut(s) 46, 218, 493
AclWI GGATC 1 cut(s) 673
AcsI RAATTY 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 325, 604
AgsI TTSAA 6 cut(s) 152, 413, 440, 502, 639, 706
AhdI GACNNNNNGTC 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 286, 296, 323, 521, 526
AluI AGCT 5 cut(s) 286, 296, 323, 521, 526
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 673
Aor13HI TCCGGA 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 706
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 254, 363
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 398
BccI CCATC 4 cut(s) 260, 443, 551, 595
BceAI ACGGC 2 cut(s) 97, 399
BcoDI GTCTC 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 3 cut(s) 46, 387, 494
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 3 cut(s) 47, 388, 495
Bme18I GGWCC 1 cut(s) 572
BmeRI GACNNNNNGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 572
BmsI GCATC 3 cut(s) 299, 367, 568
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 597
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 604
Bse1I ACTGG 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 597
BseGI GGATG 4 cut(s) 454, 484, 606, 613
BseLI CCNNNNNNNGG 2 cut(s) 325, 604
BseMII CTCAG 2 cut(s) 288, 344
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 99, 344
BseXI GCAGC 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 598
BslI CCNNNNNNNGG 2 cut(s) 325, 604
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 597
Bsp143I GATC 2 cut(s) 618, 665
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 3 cut(s) 46, 218, 493
BspCNI CTCAG 2 cut(s) 289, 345
BspEI TCCGGA 1 cut(s) 597
BspFNI CGCG 1 cut(s) 48
BspPI GGATC 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 493
BsrI ACTGG 1 cut(s) 209
BssMI GATC 2 cut(s) 618, 665
BssNI GRCGYC 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 167, 181
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 3 cut(s) 297, 353, 522
BstF5I GGATG 4 cut(s) 454, 484, 606, 613
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 621, 668
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 618, 665
BstMWI GCNNNNNNNGC 4 cut(s) 217, 302, 386, 518
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 238
BtsCI GGATG 4 cut(s) 454, 484, 606, 613
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 572
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 50
CviAII CATG 3 cut(s) 475, 616, 629
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 297, 353, 522
DpnI GATC 2 cut(s) 620, 667
DpnII GATC 2 cut(s) 618, 665
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 3 cut(s) 478, 619, 632
FaiI YATR 7 cut(s) 431, 470, 472, 476, 510, 617, 630
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 3 cut(s) 474, 615, 628
Fnu4HI GCNGC 3 cut(s) 46, 387, 494
FokI GGATG 4 cut(s) 461, 491, 613, 620
Fsp4HI GCNGC 3 cut(s) 46, 387, 494
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 46, 387, 494
HaeII RGCGCY 1 cut(s) 392
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 3 cut(s) 478, 619, 632
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 6 cut(s) 139, 248, 299, 332, 453, 590
HpaII CCGG 1 cut(s) 598
HphI GGTGA 2 cut(s) 254, 363
Hpy188I TCNGA 4 cut(s) 114, 320, 354, 537
Hpy188III TCNNGA 3 cut(s) 440, 575, 598
Hpy99I CGWCG 7 cut(s) 80, 83, 89, 92, 95, 103, 200
HpyAV CCTTC 3 cut(s) 124, 166, 656
HpyCH4III ACNGT 2 cut(s) 167, 181
HpyCH4V TGCA 2 cut(s) 512, 628
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 302, 386, 518
HpyF3I CTNAG 3 cut(s) 297, 353, 522
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 478, 619, 632
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 597
Kzo9I GATC 2 cut(s) 618, 665
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 8 cut(s) 156, 190, 272, 387, 588, 600, 611, 696
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 3 cut(s) 299, 367, 568
MaeIII GTNAC 3 cut(s) 175, 226, 270
MalI GATC 2 cut(s) 620, 667
MbiI CCGCTC 1 cut(s) 493
MboI GATC 2 cut(s) 618, 665
MboII GAAGA 5 cut(s) 29, 133, 139, 203, 360
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 236, 461, 543, 706
MlyI GAGTC 3 cut(s) 308, 341, 462
MroI TCCGGA 1 cut(s) 597
MseI TTAA 3 cut(s) 257, 542, 684
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 598
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 217, 302, 386, 518
NdeII GATC 2 cut(s) 618, 665
NlaIII CATG 3 cut(s) 478, 619, 632
NspV TTCGAA 1 cut(s) 137
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 84, 87
PfeI GAWTC 3 cut(s) 139, 248, 590
PkrI GCNGC 3 cut(s) 47, 388, 495
PleI GAGTC 3 cut(s) 307, 340, 461
PpsI GAGTC 3 cut(s) 307, 340, 461
PspPI GGNCC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 3 cut(s) 257, 542, 684
SatI GCNGC 3 cut(s) 46, 387, 494
Sau3AI GATC 2 cut(s) 618, 665
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 3 cut(s) 308, 341, 462
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 3 cut(s) 299, 367, 568
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 4 cut(s) 236, 461, 543, 706
SsiI CCGC 3 cut(s) 46, 218, 493
TaaI ACNGT 2 cut(s) 167, 181
TaqI TCGA 5 cut(s) 24, 36, 75, 137, 621
TasI AATT 4 cut(s) 236, 461, 543, 706
TauI GCSGC 2 cut(s) 48, 496
TfiI GAWTC 3 cut(s) 139, 248, 590
Tru1I TTAA 3 cut(s) 257, 542, 684
Tru9I TTAA 3 cut(s) 257, 542, 684
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 669
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.