MD13G1034500.v1.1

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014096
Physical Location & Seq
Reverse (-)
2425603 .. 2428267
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1034500.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGAGGATTTTTCCGAAGAGCTCGAGCCCTTATTCGATTACAGACGCGTTCAGCCCGTCAATCTAATTTTCCTCGACGACGATGAATTAGATGCTCCGTCAGCTTCTCCTCCGAAAAGGAGGGAAATTTCGGATTCCGCGGTTGAGAAGGTTGATGAACCTGTGAAGGTAGTGAGTGTTATTAGTTGTGAAGATAAGGAAGAGGAGGACTGGTTACCTCCTCCACCCAAGGTTTCTGCCGGCACGAAGCGGAAGGGTGAGGATTCTACCATAAAGGAACTGAGGAAAAAGAAGAAAGAGCTGGCATCGTATGCACAATCTGCTGAAAATGTGCTGAGATCGGTAGAGGAGTCTGTGATAAAAGAACTTAGTATCTTATCTGAGGCTGTTGAAGAACAACCTCCAAAGCCCCGCCCTGAAAGAAACAAAATAGTTGTATCTATTCAAGACAAAGATGGAGTTAAGCAGTTTCGTATTTATGCGGACGACAAGTTTGAGCGCCTCTTCAAAATGTATGCAGATAATGTTAAGCTTGACCTTCAGAGTCTGGTGTTTTGTTTTGATGGTGACAAAATAGGTCCAGCTGCTACGCCTGATGCCCTTGGGATGGAGGAAAATGACATTATTGAAGTGCACGTTACCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

217

Amino Acids

24.52

Weight (kDa)

4.68

Isoelectric Point (pI)

68.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 143 - 212 5.6e-12 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 48, 140
AciI CCGC 5 cut(s) 138, 140, 250, 412, 482
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 607
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 4 cut(s) 392, 446, 508, 629
AluBI AGCT 5 cut(s) 22, 104, 301, 532, 584
AluI AGCT 5 cut(s) 22, 104, 301, 532, 584
Alw21I GWGCWC 2 cut(s) 24, 636
Alw44I GTGCAC 1 cut(s) 632
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 23
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 269, 578
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 636
BanII GRGCYC 2 cut(s) 24, 30
Bbv12I GWGCWC 2 cut(s) 24, 636
BbvI GCAGC 1 cut(s) 571
BccI CCATC 3 cut(s) 449, 557, 601
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 578
BmsI GCATC 3 cut(s) 82, 314, 586
BpuEI CTTGAG 1 cut(s) 628
BsaJI CCNNGG 3 cut(s) 138, 228, 601
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 138, 228, 601
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 272, 326, 372
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 4 cut(s) 99, 210, 218, 362
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 1 cut(s) 571
Bsh1236I CGCG 2 cut(s) 48, 140
BsiHKAI GWGCWC 2 cut(s) 24, 636
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 607
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 24, 30, 636
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 5 cut(s) 138, 140, 250, 412, 482
BspCNI CTCAG 3 cut(s) 273, 327, 373
BspFNI CGCG 2 cut(s) 48, 140
BspQI GCTCTTC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 138, 228, 601
BssMI GATC 1 cut(s) 338
BssT1I CCWWGG 2 cut(s) 228, 601
Bst6I CTCTTC 3 cut(s) 12, 195, 509
BstAPI GCANNNNNTGC 2 cut(s) 311, 320
BstC8I GCNNGC 2 cut(s) 241, 303
BstDEI CTNAG 4 cut(s) 281, 335, 368, 381
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 2 cut(s) 48, 140
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 101, 311, 320
BstPI GGTNACC 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 636
BstUI CGCG 2 cut(s) 48, 140
BstV1I GCAGC 1 cut(s) 571
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 241, 303
CaiI CAGNNNCTG 1 cut(s) 547
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 578
Cfr42I CCGCGG 1 cut(s) 141
CseI GACGC 1 cut(s) 54
CviJI RGCY 9 cut(s) 22, 28, 55, 104, 301, 386, 409, 532, 584
CviKI_1 RGCY 9 cut(s) 22, 28, 55, 104, 301, 386, 409, 532, 584
DdeI CTNAG 4 cut(s) 281, 335, 368, 381
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
Eam1104I CTCTTC 3 cut(s) 12, 195, 509
EarI CTCTTC 3 cut(s) 12, 195, 509
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 228, 601
Eco24I GRGCYC 2 cut(s) 24, 30
Eco47I GGWCC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 228, 601
EcoT38I GRGCYC 2 cut(s) 24, 30
ErhI CCWWGG 2 cut(s) 228, 601
FaiI YATR 4 cut(s) 272, 312, 480, 516
FauI CCCGC 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 2 cut(s) 24, 30
Fsp4HI GCNGC 1 cut(s) 585
GlaI GCGC 1 cut(s) 500
GluI GCNGC 1 cut(s) 585
HaeII RGCGCY 1 cut(s) 502
HapII CCGG 1 cut(s) 240
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 501
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 4 cut(s) 134, 263, 350, 544
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 269, 578
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 5 cut(s) 16, 114, 133, 382, 543
Hpy188III TCNNGA 2 cut(s) 446, 645
Hpy8I GTNNAC 1 cut(s) 634
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 4 cut(s) 142, 160, 247, 548
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 3 cut(s) 314, 518, 634
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 311, 320
HpyF3I CTNAG 4 cut(s) 281, 335, 368, 381
HpySE526I ACGT 1 cut(s) 636
HspAI GCGC 1 cut(s) 499
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 141
Kzo9I GATC 1 cut(s) 338
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 174, 196, 253, 287, 429, 533, 594, 606
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 3 cut(s) 82, 314, 586
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 3 cut(s) 213, 566, 637
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 6 cut(s) 29, 203, 212, 304, 404, 496
MhlI GDGCHC 3 cut(s) 24, 30, 636
MluCI AATT 3 cut(s) 66, 86, 126
MluI ACGCGT 1 cut(s) 46
MlyI GAGTC 2 cut(s) 359, 553
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 2 cut(s) 462, 528
MspA1I CMGCKG 2 cut(s) 140, 584
MspI CCGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 48, 140
MwoI GCNNNNNNNGC 3 cut(s) 101, 311, 320
NaeI GCCGGC 1 cut(s) 241
NdeII GATC 1 cut(s) 338
NgoMIV GCCGGC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 134, 263
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 2 cut(s) 358, 552
PpsI GAGTC 2 cut(s) 358, 552
Psp124BI GAGCTC 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 578
PspXI VCTCGAGB 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 24
SacII CCGCGG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 462, 528
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 359, 553
SduI GDGCHC 3 cut(s) 24, 30, 636
SfaNI GCATC 3 cut(s) 82, 314, 586
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 141
SinI GGWCC 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 23, 643
SmoI CTYRAG 2 cut(s) 23, 643
Sse9I AATT 3 cut(s) 66, 86, 126
SsiI CCGC 5 cut(s) 138, 140, 250, 412, 482
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 2 cut(s) 228, 601
TaiI ACGT 1 cut(s) 639
TaqI TCGA 3 cut(s) 24, 36, 75
TasI AATT 3 cut(s) 66, 86, 126
TfiI GAWTC 2 cut(s) 134, 263
Tru1I TTAA 2 cut(s) 462, 528
Tru9I TTAA 2 cut(s) 462, 528
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 99, 171
TspGWI ACGGA 1 cut(s) 87
VneI GTGCAC 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 1 cut(s) 126
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.