Rroxscaffold_5G00375590

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014096
Physical Location & Seq
Reverse (-)
56369386 .. 56373189
3804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375590.1

Sequence Viewer

Length: 810 bp
ATGAGGGCTCTTGTGATTGCGATGATAAATTACAAGACACTTACTAGGCGAGTACGGGTGCTCGCGCATGGGTTCATCACCCCAAATTCTCCATGGTTCGGTTCTCGATCCTCTTTCGACAACCATGGCTCTTTCTTGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAAAGGTTGATGACAGTGTGAAGGTCACAGTTCTTGAGGATGACGACGACGACTGGTTGATTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAGCTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACAAGAACTCCTTAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCGCCACATCCAAAGTCCCAAGTTGAAAGAAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

269

Amino Acids

30.16

Weight (kDa)

5.12

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 186 - 253 1.9e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 625
AccII CGCG 2 cut(s) 65, 183
AccIII TCCGGA 1 cut(s) 729
AciI CCGC 3 cut(s) 181, 350, 625
AclWI GGATC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 3 cut(s) 98, 457, 736
AgsI TTSAA 6 cut(s) 284, 545, 572, 634, 771, 792
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 4 cut(s) 418, 428, 455, 653
AluI AGCT 4 cut(s) 418, 428, 455, 653
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 187, 518
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 2 cut(s) 67, 523
AspS9I GGNCC 2 cut(s) 448, 704
AsuHPI GGTGA 3 cut(s) 70, 386, 495
AsuII TTCGAA 1 cut(s) 269
AvaII GGWCC 2 cut(s) 448, 704
BanII GRGCYC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 199, 530
BccI CCATC 4 cut(s) 392, 575, 683, 727
BceAI ACGGC 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 524
BisI GCNGC 4 cut(s) 181, 188, 519, 626
BlsI GCNGC 4 cut(s) 182, 189, 520, 627
Bme18I GGWCC 2 cut(s) 448, 704
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 448, 704
BmsI GCATC 3 cut(s) 431, 499, 700
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 92, 124, 795
BsaWI WCCGGW 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 457, 736
Bse1I ACTGG 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 92, 124, 795
BseGI GGATG 6 cut(s) 328, 526, 586, 616, 738, 745
BseLI CCNNNNNNNGG 3 cut(s) 98, 457, 736
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 2 cut(s) 231, 476
BseXI GCAGC 2 cut(s) 199, 530
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 65, 183
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 730
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 3 cut(s) 98, 457, 736
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 10, 63
Bsp13I TCCGGA 1 cut(s) 729
Bsp143I GATC 2 cut(s) 107, 750
Bsp19I CCATGG 2 cut(s) 92, 124
BspACI CCGC 3 cut(s) 181, 350, 625
BspCNI CTCAG 1 cut(s) 421
BspEI TCCGGA 1 cut(s) 729
BspFNI CGCG 2 cut(s) 65, 183
BspPI GGATC 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 625
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 92, 124, 795
BssMI GATC 2 cut(s) 107, 750
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 92, 124, 795
Bst4CI ACNGT 2 cut(s) 299, 313
Bst6I CTCTTC 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 63, 185, 420
BstDEI CTNAG 3 cut(s) 429, 485, 654
BstDSI CCRYGG 2 cut(s) 92, 124
BstF5I GGATG 6 cut(s) 328, 526, 586, 616, 738, 745
BstFNI CGCG 2 cut(s) 65, 183
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 2 cut(s) 67, 523
BstKTI GATC 2 cut(s) 110, 753
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 2 cut(s) 107, 750
BstMWI GCNNNNNNNGC 3 cut(s) 434, 518, 650
BstUI CGCG 2 cut(s) 65, 183
BstV1I GCAGC 2 cut(s) 199, 530
BstXI CCANNNNNNTGG 1 cut(s) 370
BtgI CCRYGG 2 cut(s) 92, 124
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 6 cut(s) 328, 526, 586, 616, 738, 745
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 63, 185, 420
CfoI GCGC 2 cut(s) 67, 523
Cfr13I GGNCC 2 cut(s) 448, 704
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 53
CviAII CATG 6 cut(s) 68, 93, 125, 607, 748, 761
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 3 cut(s) 429, 485, 654
DpnI GATC 2 cut(s) 109, 752
DpnII GATC 2 cut(s) 107, 750
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 248
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 3 cut(s) 92, 124, 795
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 448, 704
EcoT14I CCWWGG 3 cut(s) 92, 124, 795
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 3 cut(s) 92, 124, 795
FaeI CATG 6 cut(s) 71, 96, 128, 610, 751, 764
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 520
FatI CATG 6 cut(s) 67, 92, 124, 606, 747, 760
Fnu4HI GCNGC 4 cut(s) 181, 188, 519, 626
FokI GGATG 6 cut(s) 335, 513, 593, 623, 745, 752
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 4 cut(s) 181, 188, 519, 626
FspBI CTAG 1 cut(s) 45
GlaI GCGC 2 cut(s) 66, 522
GluI GCNGC 4 cut(s) 181, 188, 519, 626
HaeII RGCGCY 1 cut(s) 524
HapII CCGG 1 cut(s) 730
HgaI GACGC 1 cut(s) 219
HhaI GCGC 2 cut(s) 67, 523
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 6 cut(s) 71, 96, 128, 610, 751, 764
Hin6I GCGC 2 cut(s) 65, 521
HinP1I GCGC 2 cut(s) 65, 521
HinfI GANTC 7 cut(s) 271, 343, 380, 431, 464, 585, 722
HpaII CCGG 1 cut(s) 730
HphI GGTGA 3 cut(s) 70, 386, 495
Hpy188I TCNGA 3 cut(s) 246, 452, 669
Hpy188III TCNNGA 5 cut(s) 105, 317, 572, 707, 730
Hpy99I CGWCG 8 cut(s) 215, 218, 221, 224, 227, 235, 332, 335
HpyAV CCTTC 2 cut(s) 256, 298
HpyCH4III ACNGT 2 cut(s) 299, 313
HpyCH4V TGCA 3 cut(s) 187, 644, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 518, 650
HpyF3I CTNAG 3 cut(s) 429, 485, 654
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 6 cut(s) 71, 96, 128, 610, 751, 764
HspAI GCGC 2 cut(s) 65, 521
Kpn2I TCCGGA 1 cut(s) 729
Kzo9I GATC 2 cut(s) 107, 750
LpnPI CCDG 7 cut(s) 288, 322, 404, 519, 720, 732, 743
Lsp1109I GCAGC 2 cut(s) 199, 530
LweI GCATC 3 cut(s) 431, 499, 700
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 307, 358, 402
MalI GATC 2 cut(s) 109, 752
MbiI CCGCTC 1 cut(s) 625
MboI GATC 2 cut(s) 107, 750
MboII GAAGA 5 cut(s) 164, 265, 271, 492, 780
MhlI GDGCHC 2 cut(s) 10, 63
MluCI AATT 4 cut(s) 28, 85, 368, 593
MlyI GAGTC 3 cut(s) 440, 473, 594
MroI TCCGGA 1 cut(s) 729
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 1 cut(s) 730
MvnI CGCG 2 cut(s) 65, 183
MwoI GCNNNNNNNGC 3 cut(s) 434, 518, 650
NcoI CCATGG 2 cut(s) 92, 124
NdeII GATC 2 cut(s) 107, 750
NlaIII CATG 6 cut(s) 71, 96, 128, 610, 751, 764
NmuCI GTSAC 1 cut(s) 307
NspV TTCGAA 1 cut(s) 269
PcsI WCGNNNNNNNCGW 3 cut(s) 216, 219, 222
PfeI GAWTC 4 cut(s) 271, 343, 380, 722
PkrI GCNGC 4 cut(s) 182, 189, 520, 627
PleI GAGTC 3 cut(s) 439, 472, 593
PpsI GAGTC 3 cut(s) 439, 472, 593
PspPI GGNCC 2 cut(s) 448, 704
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 605
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 4 cut(s) 181, 188, 519, 626
Sau3AI GATC 2 cut(s) 107, 750
Sau96I GGNCC 2 cut(s) 448, 704
SchI GAGTC 3 cut(s) 440, 473, 594
SduI GDGCHC 2 cut(s) 10, 63
SfaNI GCATC 3 cut(s) 431, 499, 700
SfuI TTCGAA 1 cut(s) 269
SinI GGWCC 2 cut(s) 448, 704
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 4 cut(s) 28, 85, 368, 593
SsiI CCGC 3 cut(s) 181, 350, 625
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 3 cut(s) 92, 124, 795
TaaI ACNGT 2 cut(s) 299, 313
TaqI TCGA 8 cut(s) 106, 117, 159, 171, 210, 269, 753, 805
TasI AATT 4 cut(s) 28, 85, 368, 593
TauI GCSGC 2 cut(s) 183, 628
TfiI GAWTC 4 cut(s) 271, 343, 380, 722
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 187, 518
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 448, 704
XapI RAATTY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.