RchiOBHm_Chr4g0434211

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014096
Physical Location & Seq
Reverse (-)
58057297 .. 58060211
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40268

Sequence Viewer

Length: 684 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAACGGTCGATGACAGTGTGAAGGTTACAGTTATTGAGGATGACGACGAGGACTGGTTGCTTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAACTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACAAGAACTTCTTAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCGCCACATCCAAAGCCCCAAGTTGAAAGGAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

227

Amino Acids

25.38

Weight (kDa)

4.54

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 144 - 211 1.4e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 499
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 3 cut(s) 46, 224, 499
AcyI GRCGYC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 331, 610
AgsI TTSAA 6 cut(s) 158, 419, 446, 508, 645, 666
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 3 cut(s) 302, 329, 527
AluI AGCT 3 cut(s) 302, 329, 527
Alw26I GTCTC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 52, 392
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 322, 578
AsuHPI GGTGA 2 cut(s) 260, 369
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 322, 578
BbvI GCAGC 2 cut(s) 64, 404
BccI CCATC 4 cut(s) 266, 449, 557, 601
BceAI ACGGC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 4 cut(s) 46, 53, 393, 500
BlsI GCNGC 4 cut(s) 47, 54, 394, 501
Bme18I GGWCC 2 cut(s) 322, 578
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 322, 578
BmsI GCATC 3 cut(s) 305, 373, 574
Bpu14I TTCGAA 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 669
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 610
Bse1I ACTGG 2 cut(s) 215, 297
BseAI TCCGGA 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BseLI CCNNNNNNNGG 2 cut(s) 331, 610
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 215, 297
BseRI GAGGAG 2 cut(s) 105, 350
BseXI GCAGC 2 cut(s) 64, 404
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 331, 610
BsmAI GTCTC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 1 cut(s) 624
BspACI CCGC 3 cut(s) 46, 224, 499
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 499
BsrI ACTGG 2 cut(s) 215, 297
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 1 cut(s) 624
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 669
Bst4CI ACNGT 3 cut(s) 163, 173, 187
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 303, 359, 528
BstF5I GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 1 cut(s) 627
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 624
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 64, 404
BstXI CCANNNNNNTGG 1 cut(s) 244
BtsCI GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 322, 578
CseI GACGC 1 cut(s) 93
CviAII CATG 3 cut(s) 481, 622, 635
DdeI CTNAG 3 cut(s) 303, 359, 528
DpnI GATC 1 cut(s) 626
DpnII GATC 1 cut(s) 624
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 122
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 322, 578
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 484, 625, 638
FaiI YATR 7 cut(s) 437, 476, 478, 482, 516, 623, 636
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 3 cut(s) 480, 621, 634
Fnu4HI GCNGC 4 cut(s) 46, 53, 393, 500
FokI GGATG 6 cut(s) 209, 387, 467, 497, 619, 626
Fsp4HI GCNGC 4 cut(s) 46, 53, 393, 500
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 46, 53, 393, 500
HaeII RGCGCY 1 cut(s) 398
HapII CCGG 1 cut(s) 604
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 484, 625, 638
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 6 cut(s) 145, 254, 305, 338, 459, 596
HpaII CCGG 1 cut(s) 604
HphI GGTGA 2 cut(s) 260, 369
Hpy188I TCNGA 3 cut(s) 120, 326, 543
Hpy188III TCNNGA 3 cut(s) 446, 581, 604
HpyAV CCTTC 2 cut(s) 130, 172
HpyCH4III ACNGT 3 cut(s) 163, 173, 187
HpyCH4V TGCA 3 cut(s) 52, 518, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
HpyF3I CTNAG 3 cut(s) 303, 359, 528
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 484, 625, 638
HspAI GCGC 1 cut(s) 395
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 1 cut(s) 624
LpnPI CCDG 7 cut(s) 162, 196, 278, 393, 594, 606, 617
Lsp1109I GCAGC 2 cut(s) 64, 404
LweI GCATC 3 cut(s) 305, 373, 574
MaeIII GTNAC 3 cut(s) 181, 232, 276
MalI GATC 1 cut(s) 626
MbiI CCGCTC 1 cut(s) 499
MboI GATC 1 cut(s) 624
MboII GAAGA 5 cut(s) 29, 139, 145, 366, 654
MluCI AATT 2 cut(s) 242, 467
MlyI GAGTC 3 cut(s) 314, 347, 468
MroI TCCGGA 1 cut(s) 603
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
NdeII GATC 1 cut(s) 624
NlaIII CATG 3 cut(s) 484, 625, 638
NspV TTCGAA 1 cut(s) 143
PcsI WCGNNNNNNNCGW 6 cut(s) 81, 84, 87, 90, 93, 96
PfeI GAWTC 3 cut(s) 145, 254, 596
PkrI GCNGC 4 cut(s) 47, 54, 394, 501
PleI GAGTC 3 cut(s) 313, 346, 467
PpsI GAGTC 3 cut(s) 313, 346, 467
PspPI GGNCC 2 cut(s) 322, 578
PvuII CAGCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 46, 53, 393, 500
Sau3AI GATC 1 cut(s) 624
Sau96I GGNCC 2 cut(s) 322, 578
SchI GAGTC 3 cut(s) 314, 347, 468
SetI ASST 8 cut(s) 183, 278, 304, 331, 529, 580, 595, 658
SfaNI GCATC 3 cut(s) 305, 373, 574
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 2 cut(s) 322, 578
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 2 cut(s) 242, 467
SsiI CCGC 3 cut(s) 46, 224, 499
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 163, 173, 187
TaqI TCGA 7 cut(s) 24, 36, 75, 143, 165, 627, 679
TasI AATT 2 cut(s) 242, 467
TauI GCSGC 2 cut(s) 48, 502
TfiI GAWTC 3 cut(s) 145, 254, 596
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 52, 392
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 322, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.