Rh4DG333700

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014096
Physical Location & Seq
Reverse (-)
55638840 .. 55641078
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG333700.1

Sequence Viewer

Length: 687 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAACGGTCGATGACAGTGTGAAGGTTACAGTTATTGAGGATGACGACGAGGACTGGTTGCTTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAACTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACAAGAACTTCTTAGTTCCCTCCAATCTTCACCTGATGCTACGGCAGCGCCACATCCAAAGCCCCAAGTTGAAAGGAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

228

Amino Acids

25.5

Weight (kDa)

4.51

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 145 - 212 1.4e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 502
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 3 cut(s) 46, 227, 502
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 334, 613
AgsI TTSAA 6 cut(s) 161, 422, 449, 511, 648, 669
AhdI GACNNNNNGTC 1 cut(s) 106
AluBI AGCT 3 cut(s) 305, 332, 530
AluI AGCT 3 cut(s) 305, 332, 530
Alw26I GTCTC 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 52, 395
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 2 cut(s) 325, 581
AsuHPI GGTGA 2 cut(s) 263, 372
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 2 cut(s) 325, 581
BbvI GCAGC 2 cut(s) 64, 407
BccI CCATC 4 cut(s) 269, 452, 560, 604
BceAI ACGGC 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 401
BisI GCNGC 4 cut(s) 46, 53, 396, 503
BlsI GCNGC 4 cut(s) 47, 54, 397, 504
Bme18I GGWCC 2 cut(s) 325, 581
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 325, 581
BmsI GCATC 3 cut(s) 308, 376, 577
Bpu14I TTCGAA 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 606
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 613
Bse1I ACTGG 2 cut(s) 218, 300
BseAI TCCGGA 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 6 cut(s) 205, 403, 463, 493, 615, 622
BseLI CCNNNNNNNGG 2 cut(s) 334, 613
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 218, 300
BseRI GAGGAG 2 cut(s) 108, 353
BseXI GCAGC 2 cut(s) 64, 407
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 607
BslI CCNNNNNNNGG 2 cut(s) 334, 613
BsmAI GTCTC 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 1 cut(s) 627
BspACI CCGC 3 cut(s) 46, 227, 502
BspCNI CTCAG 1 cut(s) 298
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 502
BsrI ACTGG 2 cut(s) 218, 300
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 166, 176, 190
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 306, 362, 531
BstF5I GGATG 6 cut(s) 205, 403, 463, 493, 615, 622
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 630
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 627
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 226, 311, 395, 527
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 64, 407
BstXI CCANNNNNNTGG 1 cut(s) 247
BtsCI GGATG 6 cut(s) 205, 403, 463, 493, 615, 622
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 325, 581
CseI GACGC 1 cut(s) 96
CviAII CATG 3 cut(s) 484, 625, 638
DdeI CTNAG 3 cut(s) 306, 362, 531
DpnI GATC 1 cut(s) 629
DpnII GATC 1 cut(s) 627
DriI GACNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 672
Eco47I GGWCC 2 cut(s) 325, 581
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 3 cut(s) 487, 628, 641
FaiI YATR 7 cut(s) 440, 479, 481, 485, 519, 626, 639
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 3 cut(s) 483, 624, 637
Fnu4HI GCNGC 4 cut(s) 46, 53, 396, 503
FokI GGATG 6 cut(s) 212, 390, 470, 500, 622, 629
Fsp4HI GCNGC 4 cut(s) 46, 53, 396, 503
GlaI GCGC 1 cut(s) 399
GluI GCNGC 4 cut(s) 46, 53, 396, 503
HaeII RGCGCY 1 cut(s) 401
HapII CCGG 1 cut(s) 607
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 487, 628, 641
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 6 cut(s) 148, 257, 308, 341, 462, 599
HpaII CCGG 1 cut(s) 607
HphI GGTGA 2 cut(s) 263, 372
Hpy188I TCNGA 3 cut(s) 123, 329, 546
Hpy188III TCNNGA 3 cut(s) 449, 584, 607
HpyAV CCTTC 2 cut(s) 133, 175
HpyCH4III ACNGT 3 cut(s) 166, 176, 190
HpyCH4V TGCA 3 cut(s) 52, 521, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 311, 395, 527
HpyF3I CTNAG 3 cut(s) 306, 362, 531
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 487, 628, 641
HspAI GCGC 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 606
Kzo9I GATC 1 cut(s) 627
LpnPI CCDG 7 cut(s) 165, 199, 281, 396, 597, 609, 620
Lsp1109I GCAGC 2 cut(s) 64, 407
LweI GCATC 3 cut(s) 308, 376, 577
MaeIII GTNAC 3 cut(s) 184, 235, 279
MalI GATC 1 cut(s) 629
MbiI CCGCTC 1 cut(s) 502
MboI GATC 1 cut(s) 627
MboII GAAGA 5 cut(s) 29, 142, 148, 369, 657
MluCI AATT 2 cut(s) 245, 470
MlyI GAGTC 3 cut(s) 317, 350, 471
MroI TCCGGA 1 cut(s) 606
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 226, 311, 395, 527
NdeII GATC 1 cut(s) 627
NlaIII CATG 3 cut(s) 487, 628, 641
NspV TTCGAA 1 cut(s) 146
PcsI WCGNNNNNNNCGW 7 cut(s) 81, 84, 87, 90, 93, 96, 99
PfeI GAWTC 3 cut(s) 148, 257, 599
PkrI GCNGC 4 cut(s) 47, 54, 397, 504
PleI GAGTC 3 cut(s) 316, 349, 470
PpsI GAGTC 3 cut(s) 316, 349, 470
PspPI GGNCC 2 cut(s) 325, 581
PvuII CAGCTG 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 4 cut(s) 46, 53, 396, 503
Sau3AI GATC 1 cut(s) 627
Sau96I GGNCC 2 cut(s) 325, 581
SchI GAGTC 3 cut(s) 317, 350, 471
SetI ASST 9 cut(s) 186, 281, 307, 334, 385, 532, 583, 598, 661
SfaNI GCATC 3 cut(s) 308, 376, 577
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 2 cut(s) 325, 581
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 2 cut(s) 245, 470
SsiI CCGC 3 cut(s) 46, 227, 502
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 166, 176, 190
TaqI TCGA 7 cut(s) 24, 36, 75, 146, 168, 630, 682
TasI AATT 2 cut(s) 245, 470
TauI GCSGC 2 cut(s) 48, 505
TfiI GAWTC 3 cut(s) 148, 257, 599
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 181
TseI GCWGC 2 cut(s) 52, 395
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 325, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.