Prupe.1G318000_v2.0.a1

Ubiquitin-2 like Rad60 SUMO-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
30593197 .. 30596705
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G318000.1

Sequence Viewer

Length: 654 bp
ATGATGGAGGAATTTTCCGAAGAGCTTGAGCCCTTATTCGATTACAGACGTGTTCAGCCTCTCAATGTCGTTTACCTTGATGACGATGATTTTGATGCTCCCTCAGCTTCTCCTCCAAAAAGGAGGAAGATTTCCGATTCTGCGGTTGAAAAGGTTGATGACACTGTGAAGGCAGTAAATGTTATTGATTGTGGTGACAAGGAAGAGGAGGATTGGTTACCTCCTCCGCCCAAGGTTTCCCTTGACACAAAGCTGCGGGGTGAGGATTCAACCTTAAGGGAGTTGAGGTTAAAGAAGCAAGAGCTGGCATCACTTGCTCAATCAGCTGAAAACGTGATGCGAGCTGTAGAGGAATCTGTGAAAAAAGAACTAAGTGATTCATTAGAGGCTGTTGCTGAAAAACCCTCAAAGCCCCGTTGTGAAAGAAACAAAATTGTTTTATCTATTCAAGACAAAGATGGAGCTAAGCAATTTCGTATTTACGTGGACGACAAGTTTGAGCGGCTCTTCAAAATGTATGCAGATAAAGCTAAGCTTGACCTTAAGAGTTTGGTGTTTTGTTTTGATGGGGACAAAATAGGTCCAGCTGCTACACCTGATGCCCTTGGCATGGAGGACCATGACATCATTGAAGTGCATGTTACCTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.58

Weight (kDa)

4.73

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 502
AciI CCGC 4 cut(s) 143, 227, 256, 502
AcsI RAATTY 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 610
AflII CTTAAG 2 cut(s) 274, 542
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 5 cut(s) 149, 270, 449, 511, 632
AjiI CACGTC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 646
ApeKI GCWGC 2 cut(s) 253, 587
ApoI RAATTY 1 cut(s) 11
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 479, 511
AspS9I GGNCC 2 cut(s) 581, 616
AsuHPI GGTGA 2 cut(s) 206, 272
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 581, 616
BanII GRGCYC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 240, 574
BccI CCATC 2 cut(s) 452, 560
BfmI CTRYAG 1 cut(s) 345
BfrI CTTAAG 2 cut(s) 274, 542
BisI GCNGC 3 cut(s) 254, 503, 588
BlpI GCTNAGC 2 cut(s) 465, 531
BlsI GCNGC 3 cut(s) 255, 504, 589
Bme18I GGWCC 2 cut(s) 581, 616
BmeT110I CYCGRG 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 581, 616
BmsI GCATC 4 cut(s) 85, 317, 327, 589
Bpu10I CCTNAGC 1 cut(s) 103
Bpu1102I GCTNAGC 2 cut(s) 465, 531
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 231, 604
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 231, 604
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 3 cut(s) 102, 213, 221
BseXI GCAGC 2 cut(s) 240, 574
BsiHKCI CYCGRG 1 cut(s) 646
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 33
Bsp1720I GCTNAGC 2 cut(s) 465, 531
BspACI CCGC 4 cut(s) 143, 227, 256, 502
BspCNI CTCAG 1 cut(s) 116
BspQI GCTCTTC 2 cut(s) 15, 512
BspTI CTTAAG 2 cut(s) 274, 542
BsrBI CCGCTC 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 231, 604
BssT1I CCWWGG 2 cut(s) 231, 604
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 15, 198, 512
BstAFI CTTAAG 2 cut(s) 274, 542
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 306, 342
BstDEI CTNAG 4 cut(s) 103, 371, 465, 531
BstEII GGTNACC 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 104, 314, 323, 527
BstNSI RCATGY 1 cut(s) 641
BstPI GGTNACC 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 240, 574
BtrI CACGTC 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 306, 342
Cfr13I GGNCC 2 cut(s) 581, 616
CviAII CATG 3 cut(s) 610, 620, 638
DdeI CTNAG 4 cut(s) 103, 371, 465, 531
Eam1104I CTCTTC 3 cut(s) 15, 198, 512
EarI CTCTTC 3 cut(s) 15, 198, 512
EciI GGCGGA 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 231, 604
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 581, 616
Eco88I CYCGRG 1 cut(s) 646
Eco91I GGTNACC 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 231, 604
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 231, 604
FaeI CATG 3 cut(s) 613, 623, 641
FaiI YATR 4 cut(s) 519, 611, 621, 639
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 609, 619, 637
FauI CCCGC 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 254, 503, 588
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 254, 503, 588
GluI GCNGC 3 cut(s) 254, 503, 588
Hin1II CATG 3 cut(s) 613, 623, 641
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 137, 266, 353, 377
HphI GGTGA 2 cut(s) 206, 272
Hpy166II GTNNAC 2 cut(s) 73, 487
Hpy188I TCNGA 2 cut(s) 19, 136
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 2 cut(s) 73, 487
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 3 cut(s) 49, 333, 483
HpyCH4V TGCA 2 cut(s) 521, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 314, 323, 527
HpyF3I CTNAG 4 cut(s) 103, 371, 465, 531
HpySE526I ACGT 3 cut(s) 49, 333, 483
Hsp92II CATG 3 cut(s) 613, 623, 641
LguI GCTCTTC 2 cut(s) 15, 512
LmnI GCTCC 2 cut(s) 103, 461
LpnPI CCDG 3 cut(s) 290, 597, 609
Lsp1109I GCAGC 2 cut(s) 240, 574
LweI GCATC 4 cut(s) 85, 317, 327, 589
MaeII ACGT 3 cut(s) 49, 333, 483
MaeIII GTNAC 3 cut(s) 194, 216, 640
MbiI CCGCTC 1 cut(s) 502
MboII GAAGA 4 cut(s) 32, 139, 215, 499
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 11, 432, 470
MseI TTAA 3 cut(s) 275, 290, 543
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 2 cut(s) 326, 587
MspCI CTTAAG 2 cut(s) 274, 542
MwoI GCNNNNNNNGC 4 cut(s) 104, 314, 323, 527
NlaIII CATG 3 cut(s) 613, 623, 641
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 646
PciSI GCTCTTC 2 cut(s) 15, 512
PfeI GAWTC 4 cut(s) 137, 266, 353, 377
PkrI GCNGC 3 cut(s) 255, 504, 589
Ppu21I YACGTR 1 cut(s) 484
PspEI GGTNACC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 581, 616
PspXI VCTCGAGB 1 cut(s) 646
PvuII CAGCTG 2 cut(s) 326, 587
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 2 cut(s) 15, 512
SaqAI TTAA 3 cut(s) 275, 290, 543
SatI GCNGC 3 cut(s) 254, 503, 588
Sau96I GGNCC 2 cut(s) 581, 616
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 4 cut(s) 85, 317, 327, 589
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 646
SinI GGWCC 2 cut(s) 581, 616
SlaI CTCGAG 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 26, 274, 542, 646
SmoI CTYRAG 4 cut(s) 26, 274, 542, 646
Sse9I AATT 3 cut(s) 11, 432, 470
SsiI CCGC 4 cut(s) 143, 227, 256, 502
StyI CCWWGG 2 cut(s) 231, 604
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 3 cut(s) 52, 336, 486
TaqI TCGA 2 cut(s) 39, 647
TasI AATT 3 cut(s) 11, 432, 470
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 4 cut(s) 137, 266, 353, 377
Tru1I TTAA 3 cut(s) 275, 290, 543
Tru9I TTAA 3 cut(s) 275, 290, 543
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 253, 587
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 169
Vha464I CTTAAG 2 cut(s) 274, 542
VpaK11BI GGWCC 2 cut(s) 581, 616
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.