FvH4_4g26560

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014096
Physical Location & Seq
Reverse (-)
27902669 .. 27904690
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26560.t1

Sequence Viewer

Length: 675 bp
ATGGCGGATTTCACGGAAGAGCTGGAGCCCCTTTTCGATTACAGCCGCGTGCAGCCGCTTAATGTCATCTCCGTCCTCGACGACGACGACGAGCCGGATTCTCCTCCGAGCAAGAAGGCGAAGACGGCTTTGAATCCAGCTGTTGAAAAAGTTGATGAAAGTGCGAAAGTTACTGTTATTGAGGAAGACGAGGAGGACTGGCTCATTCCTGCGCCTAAAGTTACTAGGCCGTTGGGTGAAGATTCGATCTTAAAGGCATTGAGGTTACAGAAGCAAGAGCTGGCATCATTTGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACAAGAACTTCTTAGTTCTGTCCAGACTTCACCAGATGCTATGGCTGCTCCACCTCCAAAGCCCCAAGTTGAAAGAAACAAAGTAGTTATATGTATTCAAGACAAGGATGAATCCAAGCAGTTCCGCATATTCATGGATGACAAGCTTGATCGGATATTCAAACTGTATGCAGATAAAGTTAAGCTTGACATTCAGAGTTTAGTTTTTAGGTTTGATGGAGATAAAATAGCTCCAGATGCAACACCTCAATCCCTTGGGATGGAGGACGAAGATATTATTGAAGTACATTATACTTCAAACCAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

225

Amino Acids

25.13

Weight (kDa)

4.53

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 145 - 208 1.5e-11 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 4 cut(s) 5, 46, 56, 463
AfaI GTAC 1 cut(s) 624
AfiI CCNNNNNNNGG 2 cut(s) 322, 598
AgsI TTSAA 8 cut(s) 133, 146, 410, 437, 499, 620, 636, 657
AluBI AGCT 7 cut(s) 22, 140, 280, 320, 484, 523, 569
AluI AGCT 7 cut(s) 22, 140, 280, 320, 484, 523, 569
Alw26I GTCTC 1 cut(s) 331
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 52, 383
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 248, 360
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 128, 192
BbvI GCAGC 2 cut(s) 64, 370
BccI CCATC 2 cut(s) 548, 592
BceAI ACGGC 2 cut(s) 141, 214
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 225
BisI GCNGC 4 cut(s) 46, 53, 56, 384
BlsI GCNGC 4 cut(s) 47, 54, 57, 385
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 3 cut(s) 293, 364, 565
BpiI GAAGAC 2 cut(s) 128, 192
BpmI CTGGAG 2 cut(s) 44, 555
BsaJI CCNNGG 2 cut(s) 592, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 598
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 592, 660
BseGI GGATG 3 cut(s) 451, 481, 603
BseLI CCNNNNNNNGG 2 cut(s) 322, 598
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 93, 206, 341
BseXI GCAGC 2 cut(s) 64, 370
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 322, 598
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 246, 487
BspACI CCGC 4 cut(s) 5, 46, 56, 463
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 592, 660
BssMI GATC 2 cut(s) 246, 487
BssT1I CCWWGG 2 cut(s) 592, 660
Bst4CI ACNGT 2 cut(s) 175, 504
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 50, 282
BstDEI CTNAG 2 cut(s) 294, 350
BstF5I GGATG 3 cut(s) 451, 481, 603
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 249, 490
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 2 cut(s) 246, 487
BstMWI GCNNNNNNNGC 5 cut(s) 125, 290, 299, 383, 575
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 64, 370
BstV2I GAAGAC 2 cut(s) 128, 192
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 451, 481, 603
Cac8I GCNNGC 2 cut(s) 50, 282
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 623
CviAII CATG 1 cut(s) 472
CviQI GTAC 1 cut(s) 623
DdeI CTNAG 2 cut(s) 294, 350
DpnI GATC 2 cut(s) 248, 489
DpnII GATC 2 cut(s) 246, 487
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 592, 660
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 592, 660
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 592, 660
FaeI CATG 1 cut(s) 475
FaiI YATR 7 cut(s) 380, 428, 430, 467, 473, 507, 630
FalI AAGNNNNNCTT 4 cut(s) 333, 365, 507, 539
FatI CATG 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 46, 53, 56, 384
FokI GGATG 3 cut(s) 458, 488, 610
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 46, 53, 56, 384
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 213
GluI GCNGC 4 cut(s) 46, 53, 56, 384
GsuI CTGGAG 2 cut(s) 44, 555
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HindIII AAGCTT 2 cut(s) 482, 521
HinfI GANTC 6 cut(s) 98, 133, 242, 296, 329, 449
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 248, 360
Hpy188I TCNGA 4 cut(s) 108, 317, 492, 534
Hpy188III TCNNGA 3 cut(s) 361, 437, 572
Hpy99I CGWCG 4 cut(s) 83, 86, 89, 92
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 175, 504
HpyCH4V TGCA 3 cut(s) 52, 509, 578
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 290, 299, 383, 575
HpyF3I CTNAG 2 cut(s) 294, 350
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 2 cut(s) 246, 487
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 25, 391, 574
LpnPI CCDG 9 cut(s) 8, 108, 150, 184, 222, 266, 374, 384, 585
Lsp1109I GCAGC 2 cut(s) 64, 370
LweI GCATC 3 cut(s) 293, 364, 565
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 169, 220, 264
MalI GATC 2 cut(s) 248, 489
MboI GATC 2 cut(s) 246, 487
MboII GAAGA 6 cut(s) 29, 133, 197, 251, 620, 645
MhlI GDGCHC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 305, 338
MseI TTAA 3 cut(s) 60, 251, 519
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 5 cut(s) 125, 290, 299, 383, 575
NdeII GATC 2 cut(s) 246, 487
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 87
PfeI GAWTC 4 cut(s) 98, 133, 242, 449
PkrI GCNGC 4 cut(s) 47, 54, 57, 385
PleI GAGTC 2 cut(s) 304, 337
PpsI GAGTC 2 cut(s) 304, 337
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 624
RsaNI GTAC 1 cut(s) 623
RseI CAYNNNNRTG 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 60, 251, 519
SatI GCNGC 4 cut(s) 46, 53, 56, 384
Sau3AI GATC 2 cut(s) 246, 487
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 305, 338
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 293, 364, 565
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 470
SsiI CCGC 4 cut(s) 5, 46, 56, 463
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 592, 660
TaaI ACNGT 2 cut(s) 175, 504
TaqI TCGA 4 cut(s) 36, 78, 245, 670
TatI WGTACW 1 cut(s) 622
TauI GCSGC 2 cut(s) 48, 58
TfiI GAWTC 4 cut(s) 98, 133, 242, 449
Tru1I TTAA 3 cut(s) 60, 251, 519
Tru9I TTAA 3 cut(s) 60, 251, 519
TseI GCWGC 2 cut(s) 52, 383
TspDTI ATGAA 3 cut(s) 171, 460, 462
TspGWI ACGGA 2 cut(s) 29, 61
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.