Rh4AG330100

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014096
Physical Location & Seq
Reverse (-)
64055155 .. 64057393
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG330100.1

Sequence Viewer

Length: 357 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

4.34

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 52 - 102 2.4e-12 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 2 cut(s) 46, 172
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 3 cut(s) 181, 318, 339
AhdI GACNNNNNGTC 1 cut(s) 106
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 230, 274
BisI GCNGC 3 cut(s) 46, 53, 173
BlsI GCNGC 3 cut(s) 47, 54, 174
Bme18I GGWCC 1 cut(s) 251
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 251
BmsI GCATC 1 cut(s) 247
Bpu14I TTCGAA 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseAI TCCGGA 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 285, 292
BseLI CCNNNNNNNGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 2 cut(s) 46, 172
BspEI TCCGGA 1 cut(s) 276
BspFNI CGCG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 285, 292
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 1 cut(s) 300
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 285, 292
Cac8I GCNNGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 96
CviAII CATG 2 cut(s) 295, 308
CviJI RGCY 6 cut(s) 45, 55, 113, 143, 175, 200
CviKI_1 RGCY 6 cut(s) 45, 55, 113, 143, 175, 200
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DriI GACNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 298, 311
FaiI YATR 3 cut(s) 189, 296, 309
FatI CATG 2 cut(s) 294, 307
Fnu4HI GCNGC 3 cut(s) 46, 53, 173
FokI GGATG 2 cut(s) 292, 299
Fsp4HI GCNGC 3 cut(s) 46, 53, 173
GluI GCNGC 3 cut(s) 46, 53, 173
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 298, 311
HinfI GANTC 2 cut(s) 148, 269
HpaII CCGG 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 123, 216
Hpy188III TCNNGA 2 cut(s) 254, 277
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 52, 191, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 298, 311
Kpn2I TCCGGA 1 cut(s) 276
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 4 cut(s) 165, 267, 279, 290
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 247
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 297
MboII GAAGA 4 cut(s) 29, 142, 148, 327
MnlI CCTC 6 cut(s) 66, 83, 97, 126, 129, 277
MroI TCCGGA 1 cut(s) 276
MspI CCGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 298, 311
NspV TTCGAA 1 cut(s) 146
PcsI WCGNNNNNNNCGW 7 cut(s) 81, 84, 87, 90, 93, 96, 99
PfeI GAWTC 2 cut(s) 148, 269
PkrI GCNGC 3 cut(s) 47, 54, 174
PspPI GGNCC 1 cut(s) 251
SatI GCNGC 3 cut(s) 46, 53, 173
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 251
SetI ASST 4 cut(s) 202, 253, 268, 331
SfaNI GCATC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 1 cut(s) 251
SsiI CCGC 2 cut(s) 46, 172
StyI CCWWGG 1 cut(s) 342
TaqI TCGA 6 cut(s) 24, 36, 75, 146, 300, 352
TauI GCSGC 2 cut(s) 48, 175
TfiI GAWTC 2 cut(s) 148, 269
TseI GCWGC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.