Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0014096

Physical Location & Seq

Genomic Coordinates Reverse (-)

36092 .. 38305

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggcagattttaccgaagaactcgaaccccttttcgattacagccgcgtgcagcctctcaatgtcgtctccctcgacgacgacgacgacgacgaggcgtcggcttctcctccgagcaagaagaggaagaaggcttcgaatccagcagttgaaaaggtcgatgacagtgtcaaggttacagttattgaggatgacgacgaggactggttgcttcctccgcccaaagttaccaagaaattgggtgatgattccatcttaaaggcgttgaggttacagaagcaagagctggcatcagctgagtcggctgaaaatgtggtccgagctgtggaggagtctgtgagacaagaacttcttagttccctccaatcttcaccagatgctacggcaacgccacatccaaagccccaagttgaaagaaacaaagtagttatatctattcaagacaaggatggagtcaagcaatttcgcatatacatggatgacaagtttgagcggctattcaaaatgtatgcagataaagctaagattgacattcagagtttggtttttagttttgatggagataaaataggtccagatgccacacctgaatcactccggatggaggatgatgacatgatcgaagtgcatgatacttcaaacaaaaaaggtgtttcttcaaccaaggcaactcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

225

Amino Acids

25.2

Weight (kDa)

4.65

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68185 AT1G68185 AT1G68185
fragaria_vesca	FvH4_4g26560
malus_domestica	MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica	Prupe.1G318000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434211
rosa_laevigata	RLG00000006692
rosa_multiflora	Rmu_sc0000459.1_g000010
rosa_roxburghii	Rroxscaffold_5G00375590
rosa_rugosa	Rorug04G0275500
rosa_samantha	Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana	Rw4G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	493
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	3 cut(s)	46, 218, 493
AcyI	GRCGYC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	325, 604
AgsI	TTSAA	6 cut(s)	152, 413, 440, 502, 639, 660
AhdI	GACNNNNNGTC	1 cut(s)	97
AluBI	AGCT	4 cut(s)	286, 296, 323, 521
AluI	AGCT	4 cut(s)	286, 296, 323, 521
Alw26I	GTCTC	2 cut(s)	73, 334
Aor13HI	TCCGGA	1 cut(s)	597
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	316, 572
AsuHPI	GGTGA	2 cut(s)	254, 363
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	316, 572
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	4 cut(s)	260, 443, 551, 595
BceAI	ACGGC	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	73, 334
BisI	GCNGC	3 cut(s)	46, 53, 494
BlsI	GCNGC	3 cut(s)	47, 54, 495
Bme18I	GGWCC	2 cut(s)	316, 572
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	316, 572
BmsI	GCATC	3 cut(s)	299, 367, 568
Bpu14I	TTCGAA	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 604
Bse1I	ACTGG	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	6 cut(s)	196, 394, 454, 484, 606, 613
BseLI	CCNNNNNNNGG	2 cut(s)	325, 604
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	99, 344
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	325, 604
BsmAI	GTCTC	2 cut(s)	73, 334
BsmBI	CGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	618
BspACI	CCGC	3 cut(s)	46, 218, 493
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	1 cut(s)	618
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	167, 181
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	50, 288
BstDEI	CTNAG	3 cut(s)	297, 353, 522
BstF5I	GGATG	6 cut(s)	196, 394, 454, 484, 606, 613
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	621
BstMAI	GTCTC	2 cut(s)	73, 334
BstMBI	GATC	1 cut(s)	618
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 302, 518
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	238
BtsCI	GGATG	6 cut(s)	196, 394, 454, 484, 606, 613
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	50, 288
Cfr13I	GGNCC	2 cut(s)	316, 572
CseI	GACGC	1 cut(s)	87
CviAII	CATG	3 cut(s)	475, 616, 629
DdeI	CTNAG	3 cut(s)	297, 353, 522
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	663
Eco47I	GGWCC	2 cut(s)	316, 572
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	3 cut(s)	478, 619, 632
FaiI	YATR	7 cut(s)	431, 470, 472, 476, 510, 617, 630
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	3 cut(s)	474, 615, 628
Fnu4HI	GCNGC	3 cut(s)	46, 53, 494
FokI	GGATG	6 cut(s)	203, 381, 461, 491, 613, 620
Fsp4HI	GCNGC	3 cut(s)	46, 53, 494
GluI	GCNGC	3 cut(s)	46, 53, 494
HapII	CCGG	1 cut(s)	598
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	478, 619, 632
HinfI	GANTC	6 cut(s)	139, 248, 299, 332, 453, 590
HpaII	CCGG	1 cut(s)	598
HphI	GGTGA	2 cut(s)	254, 363
Hpy188I	TCNGA	3 cut(s)	114, 320, 537
Hpy188III	TCNNGA	3 cut(s)	440, 575, 598
Hpy99I	CGWCG	8 cut(s)	80, 83, 86, 89, 92, 95, 103, 200
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	167, 181
HpyCH4V	TGCA	3 cut(s)	52, 512, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 302, 518
HpyF3I	CTNAG	3 cut(s)	297, 353, 522
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	478, 619, 632
Kpn2I	TCCGGA	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	618
LpnPI	CCDG	7 cut(s)	156, 190, 272, 387, 588, 600, 611
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	3 cut(s)	299, 367, 568
MaeIII	GTNAC	3 cut(s)	175, 226, 270
MalI	GATC	1 cut(s)	620
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	1 cut(s)	618
MboII	GAAGA	5 cut(s)	29, 133, 139, 360, 648
MluCI	AATT	2 cut(s)	236, 461
MlyI	GAGTC	3 cut(s)	308, 341, 462
MroI	TCCGGA	1 cut(s)	597
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	217, 302, 518
NdeII	GATC	1 cut(s)	618
NlaIII	CATG	3 cut(s)	478, 619, 632
NspV	TTCGAA	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	5 cut(s)	72, 81, 84, 87, 90
PfeI	GAWTC	3 cut(s)	139, 248, 590
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	47, 54, 495
PleI	GAGTC	3 cut(s)	307, 340, 461
PpsI	GAGTC	3 cut(s)	307, 340, 461
PspPI	GGNCC	2 cut(s)	316, 572
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	46, 53, 494
Sau3AI	GATC	1 cut(s)	618
Sau96I	GGNCC	2 cut(s)	316, 572
SchI	GAGTC	3 cut(s)	308, 341, 462
SfaNI	GCATC	3 cut(s)	299, 367, 568
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	316, 572
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	236, 461
SsiI	CCGC	3 cut(s)	46, 218, 493
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	167, 181
TaqI	TCGA	7 cut(s)	24, 36, 75, 137, 159, 621, 673
TasI	AATT	2 cut(s)	236, 461
TauI	GCSGC	2 cut(s)	48, 496
TfiI	GAWTC	3 cut(s)	139, 248, 590
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	52
TspRI	CASTG	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	316, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.