Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Forward (+)

25596671 .. 25598438

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAAACCAAAAAGGGTTACATGTAGTGATGATGATCATCACTGTTTGGCTTCTTTATGCAGCACCTAATATCCATGGATGGGGAAAAGAAGGTCATGAAATCATCTGTAAAATCGCTCAGACTAGGTTGGATGAAACAGCAGCAAAGGCCGTGAAAGAGCTGTTACCTGAATCTGCAGAAGGAGACCTCTCAAGCTTGTGTCTTTGGGCTGATCGTGTCAAGTTCAGATACCACTGGTCTTCTCCTCTTCATTACATCAACACTCCTGATGCATGCTCATACCAATACAATAGGGACTGCAAGGACGAATCTGGAGAGAAAGGAAGATGTGTTGCGGGAGCCATTTACAACTACACCACACAGCTTCTTTCCTACAAAACTGCAGCTTCATCTCAGTCACAATACAACTTAACCGAGGCCCTGCTCTTCGTGTCCCATTTCATGGGTGATATCCATCAGCCTCTACATGTGAGTTATGCTTCAGACAAAGGAGGTAACACCATCGAAGTACATTGGTACACGAGAAAAGCTAACCTCCACCATATATGGGATTCCAACATTATCGAAACAGCTGAAGCAGATCTCTATAACTCTGCACTAGAAGGAATGGTGGATGCACTCAAAAAGAATATCACGACAGAATGGGCAGATCAAGTTAAGAGATGGGAGACCTGCACAAAGAAGACAGCATGTCCAGACATATACGCATCCGAAGGAATTCAAGCAGCCTGTGACTGGGCATACAAGGGGGTAACGGAAGGAGACACTCTAGAAGATGAATACTTCTATTCACGTCTACCGATAGTGTATCAGCGGTTAGCACAGGGAGGGGTGAGACTAGCAGCTACCCTAAACAGGATTTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

290

Amino Acids

32.74

Weight (kDa)

5.88

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	28 - 289	1.2e-88	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	2 cut(s)	338, 817
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	2 cut(s)	468, 597
AfaI	GTAC	2 cut(s)	513, 521
AfiI	CCNNNNNNNGG	5 cut(s)	82, 445, 550, 738, 858
AflIII	ACRYGT	2 cut(s)	22, 469
AgsI	TTSAA	1 cut(s)	725
AhdI	GACNNNNNGTC	1 cut(s)	693
AjiI	CACGTC	1 cut(s)	797
AluBI	AGCT	7 cut(s)	163, 198, 367, 389, 533, 575, 848
AluI	AGCT	7 cut(s)	163, 198, 367, 389, 533, 575, 848
Alw26I	GTCTC	4 cut(s)	180, 665, 759, 832
AoxI	GGCC	2 cut(s)	150, 420
ApeKI	GCWGC	5 cut(s)	62, 143, 386, 728, 845
ApoI	RAATTY	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	461, 847
BauI	CACGAG	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	234, 692
BbvI	GCAGC	5 cut(s)	74, 155, 398, 740, 857
BccI	CCATC	4 cut(s)	75, 465, 512, 660
BceAI	ACGGC	1 cut(s)	137
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	4 cut(s)	180, 665, 759, 832
BfaI	CTAG	4 cut(s)	126, 602, 773, 842
BfmI	CTRYAG	2 cut(s)	177, 384
BfuAI	ACCTGC	1 cut(s)	683
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	5 cut(s)	63, 144, 387, 729, 846
BlsI	GCNGC	5 cut(s)	64, 145, 388, 730, 847
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	3 cut(s)	262, 607, 719
BmuI	ACTGGG	1 cut(s)	748
BpiI	GAAGAC	2 cut(s)	234, 692
BpmI	CTGGAG	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	178
BsaBI	GATNNNNATC	3 cut(s)	35, 38, 456
BsaI	GGTCTC	2 cut(s)	180, 665
BsaJI	CCNNGG	2 cut(s)	76, 417
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 445, 550, 738, 858
Bse1I	ACTGG	2 cut(s)	242, 743
Bse8I	GATNNNNATC	3 cut(s)	35, 38, 456
BseDI	CCNNGG	2 cut(s)	76, 417
BseGI	GGATG	4 cut(s)	86, 139, 622, 710
BseJI	GATNNNNATC	3 cut(s)	35, 38, 456
BseLI	CCNNNNNNNGG	5 cut(s)	82, 445, 550, 738, 858
BseMII	CTCAG	2 cut(s)	134, 410
BseNI	ACTGG	2 cut(s)	242, 743
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	74, 155, 398, 740, 857
BsgI	GTGCAG	2 cut(s)	582, 661
BshFI	GGCC	2 cut(s)	152, 422
BslFI	GGGAC	2 cut(s)	311, 421
BslI	CCNNNNNNNGG	5 cut(s)	82, 445, 550, 738, 858
BsmAI	GTCTC	4 cut(s)	180, 665, 759, 832
BsmFI	GGGAC	2 cut(s)	311, 421
BsnI	GGCC	2 cut(s)	152, 422
Bso31I	GGTCTC	2 cut(s)	180, 665
Bsp143I	GATC	4 cut(s)	36, 214, 583, 652
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	338, 817
BspANI	GGCC	2 cut(s)	152, 422
BspCNI	CTCAG	2 cut(s)	133, 409
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	343
BspMAI	CTGCAG	2 cut(s)	181, 388
BspMI	ACCTGC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	180, 665
BsrI	ACTGG	2 cut(s)	242, 743
BssECI	CCNNGG	2 cut(s)	76, 417
BssMI	GATC	4 cut(s)	36, 214, 583, 652
BssSI	CACGAG	1 cut(s)	523
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	255, 434
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	120, 396
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	86, 139, 622, 710
BstKTI	GATC	4 cut(s)	39, 217, 586, 655
BstMAI	GTCTC	4 cut(s)	180, 665, 759, 832
BstMBI	GATC	4 cut(s)	36, 214, 583, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	4 cut(s)	26, 279, 473, 696
BstSFI	CTRYAG	2 cut(s)	177, 384
BstV1I	GCAGC	5 cut(s)	74, 155, 398, 740, 857
BstV2I	GAAGAC	2 cut(s)	234, 692
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	152, 422
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	4 cut(s)	86, 139, 622, 710
BtsIMutI	CAGTG	2 cut(s)	42, 235
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	512, 520
CviAII	CATG	7 cut(s)	23, 77, 98, 276, 445, 470, 693
CviQI	GTAC	2 cut(s)	512, 520
DdeI	CTNAG	2 cut(s)	120, 396
DpnI	GATC	4 cut(s)	38, 216, 585, 654
DpnII	GATC	4 cut(s)	36, 214, 583, 652
DriI	GACNNNNNGTC	1 cut(s)	693
Eam1104I	CTCTTC	2 cut(s)	255, 434
Eam1105I	GACNNNNNGTC	1 cut(s)	693
EarI	CTCTTC	2 cut(s)	255, 434
Eco130I	CCWWGG	1 cut(s)	76
Eco31I	GGTCTC	2 cut(s)	180, 665
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	468, 597
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	720
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	7 cut(s)	26, 80, 101, 279, 448, 473, 696
FaqI	GGGAC	2 cut(s)	311, 421
FatI	CATG	7 cut(s)	22, 76, 97, 275, 444, 469, 692
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	5 cut(s)	63, 144, 387, 729, 846
FokI	GGATG	4 cut(s)	93, 146, 629, 697
Fsp4HI	GCNGC	5 cut(s)	63, 144, 387, 729, 846
FspBI	CTAG	4 cut(s)	126, 602, 773, 842
GluI	GCNGC	5 cut(s)	63, 144, 387, 729, 846
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	152, 422
Hin1II	CATG	7 cut(s)	26, 80, 101, 279, 448, 473, 696
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	173, 311, 554
HphI	GGTGA	2 cut(s)	461, 847
Hpy166II	GTNNAC	2 cut(s)	522, 800
Hpy188I	TCNGA	4 cut(s)	123, 230, 487, 715
Hpy188III	TCNNGA	6 cut(s)	98, 269, 315, 637, 698, 773
Hpy8I	GTNNAC	2 cut(s)	522, 800
HpyAV	CCTTC	5 cut(s)	86, 176, 599, 710, 755
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	8 cut(s)	62, 179, 275, 303, 386, 599, 620, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	120, 396
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	7 cut(s)	26, 80, 101, 279, 448, 473, 696
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	36, 214, 583, 652
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	5 cut(s)	74, 155, 398, 740, 857
LweI	GCATC	3 cut(s)	262, 607, 719
MaeI	CTAG	4 cut(s)	126, 602, 773, 842
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	6 cut(s)	18, 165, 399, 497, 734, 754
MalI	GATC	4 cut(s)	38, 216, 585, 654
MboI	GATC	4 cut(s)	36, 214, 583, 652
MboII	GAAGA	6 cut(s)	234, 242, 339, 421, 697, 788
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	111, 582
MnlI	CCTC	7 cut(s)	200, 258, 412, 474, 488, 548, 824
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	2 cut(s)	413, 660
MspA1I	CMGCKG	2 cut(s)	575, 817
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	4 cut(s)	36, 214, 583, 652
NlaIII	CATG	7 cut(s)	26, 80, 101, 279, 448, 473, 696
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	399, 734
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	4 cut(s)	26, 279, 473, 696
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	97
PciI	ACATGT	2 cut(s)	22, 469
PciSI	GCTCTTC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	173, 311, 554
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	64, 145, 388, 730, 847
PscI	ACATGT	2 cut(s)	22, 469
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	421
PstI	CTGCAG	2 cut(s)	181, 388
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	513, 521
RsaNI	GTAC	2 cut(s)	512, 520
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	413, 660
SatI	GCNGC	5 cut(s)	63, 144, 387, 729, 846
Sau3AI	GATC	4 cut(s)	36, 214, 583, 652
Sau96I	GGNCC	1 cut(s)	421
SfaNI	GCATC	3 cut(s)	262, 607, 719
SfcI	CTRYAG	2 cut(s)	177, 384
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	720
SsiI	CCGC	2 cut(s)	338, 817
SspMI	CTAG	4 cut(s)	126, 602, 773, 842
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	2 cut(s)	507, 567
TasI	AATT	1 cut(s)	720
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	3 cut(s)	173, 311, 554
Tru1I	TTAA	2 cut(s)	413, 660
Tru9I	TTAA	2 cut(s)	413, 660
TscAI	CASTG	2 cut(s)	49, 242
TseFI	GTSAC	2 cut(s)	399, 734
TseI	GCWGC	5 cut(s)	62, 143, 386, 728, 845
Tsp45I	GTSAC	2 cut(s)	399, 734
TspDTI	ATGAA	6 cut(s)	114, 150, 242, 381, 433, 795
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	49, 242
Van91I	CCANNNNNTGG	1 cut(s)	445
XapI	RAATTY	1 cut(s)	720
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	4 cut(s)	26, 279, 473, 696
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	4 cut(s)	126, 602, 773, 842
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.