Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Reverse (-)

28295961 .. 28298086

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGCAGCATGGTCCGGATATTTGCTATGTGTTCACTGCTGCTTGTTCTTCATTTTCCTGTGATTCATGGCTGGGGAATCGAGGGTCACACTACGGTGTGTAGAATTGCTCAGTCTAGGTTGAGCGATGCAGCAGCAGATGCAGTGCAGCAATTGCTTCCCAAGTATGCAGAAAATGACTTGGGGAGTGTCTGCATTTGGGCCGATCGTGTCAAGTTTCAGTATCACTGGTCATCTGCCCTTCACTACATTGACACTCCTGACAATCTTTGCACTTATCAGTACTATAGGGACTGCAAAGACGAAAATGGAGACAAGGGGCGTTGTGTTGCTGGGGCCATAAACAACTACACCACTCAGCTTCTCACTTACAGCTCCGGTTCTTCCAAGTCGGACTATAACCTCACTGAAGCACTGCTATTCCTTTCGCATTTCTTTGGAGATATCCACCAGCCTCTACATGTGGGTTTCACTTCAGACAGGGGAGGCAATACCATCGATGTTCACTGGTACACTAGGAAGCAAAATCTTCACCATATATGGGATAGCAACATAATTGAAACAGCAGAAGAGAGGTTCTACGATAATAATCTGGATGAACTGGTTGATGCAATTAAACAGAATATTACGACTGAATGGGCAGATGAAGTTAAGGCTTGGGAAACATGCAGTTTGAACAAGACGGCATGCCCAGATGTATATGCATCTGAAGGTATCAAAGCAGCTTGTGATTGGGCTTACAAGGGTGTAGATGAAGGATCAGTGCTACAAGATCCATACTTCCTCTCTCGGACACCTATCGTCAATAGGCGGTTGGCTCAAGGCGGAGTCCGGTTAGCAGCCACTCTCAACCGGATATTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

289

Amino Acids

32.52

Weight (kDa)

5.51

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	25 - 287	2.3e-85	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	2 cut(s)	811, 825
AclWI	GGATC	2 cut(s)	766, 767
AcuI	CTGAAG	3 cut(s)	429, 459, 729
AfaI	GTAC	2 cut(s)	284, 512
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	560, 676
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	361, 375, 725
AluI	AGCT	3 cut(s)	361, 375, 725
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	766, 767
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	2 cut(s)	201, 336
ApeKI	GCWGC	7 cut(s)	6, 40, 131, 134, 148, 722, 839
AspS9I	GGNCC	3 cut(s)	13, 201, 336
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	13
BbvI	GCAGC	7 cut(s)	18, 27, 143, 146, 160, 734, 851
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	699
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	117, 516
BfmI	CTRYAG	1 cut(s)	286
BisI	GCNGC	7 cut(s)	7, 41, 132, 135, 149, 723, 840
BlsI	GCNGC	7 cut(s)	8, 42, 133, 136, 150, 724, 841
BmcAI	AGTACT	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	13, 201, 336
BmiI	GGNNCC	1 cut(s)	337
BmsI	GCATC	4 cut(s)	118, 130, 598, 713
BpuEI	CTTGAG	1 cut(s)	804
Bsa29I	ATCGAT	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	588
BsaWI	WCCGGW	4 cut(s)	15, 377, 831, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	233, 512, 606
Bse8I	GATNNNNATC	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	498
BseGI	GGATG	1 cut(s)	601
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	2 cut(s)	125, 371
BseNI	ACTGG	3 cut(s)	233, 512, 606
BseXI	GCAGC	7 cut(s)	18, 27, 143, 146, 160, 734, 851
BseYI	CCCAGC	2 cut(s)	72, 332
BsgI	GTGCAG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	203, 338
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	16, 378, 832, 853
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	203, 338
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	205, 758, 772
BspACI	CCGC	2 cut(s)	811, 825
BspANI	GGCC	2 cut(s)	203, 338
BspCNI	CTCAG	2 cut(s)	124, 370
BspDI	ATCGAT	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	766, 767
BsrI	ACTGG	3 cut(s)	233, 512, 606
BssMI	GATC	3 cut(s)	205, 758, 772
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	564
BstAPI	GCANNNNNTGC	2 cut(s)	140, 154
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	2 cut(s)	111, 357
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	3 cut(s)	208, 761, 775
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	205, 758, 772
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 154
BstNSI	RCATGY	3 cut(s)	464, 669, 690
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	7 cut(s)	18, 27, 143, 146, 160, 734, 851
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	203, 338
BsuTUI	ATCGAT	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	3 cut(s)	35, 150, 413
BtsIMutI	CAGTG	7 cut(s)	35, 150, 226, 405, 413, 505, 768
Cac8I	GCNNGC	1 cut(s)	688
Cfr13I	GGNCC	3 cut(s)	13, 201, 336
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	283, 511
CviAII	CATG	5 cut(s)	10, 68, 461, 666, 687
CviQI	GTAC	2 cut(s)	283, 511
DdeI	CTNAG	2 cut(s)	111, 357
DpnI	GATC	3 cut(s)	207, 760, 774
DpnII	GATC	3 cut(s)	205, 758, 772
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	3 cut(s)	429, 459, 729
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	706
FaeI	CATG	5 cut(s)	13, 71, 464, 669, 690
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	9, 67, 460, 665, 686
Fnu4HI	GCNGC	7 cut(s)	7, 41, 132, 135, 149, 723, 840
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	7 cut(s)	7, 41, 132, 135, 149, 723, 840
FspBI	CTAG	2 cut(s)	117, 516
GluI	GCNGC	7 cut(s)	7, 41, 132, 135, 149, 723, 840
GsaI	CCCAGC	2 cut(s)	76, 336
HaeIII	GGCC	2 cut(s)	203, 338
HapII	CCGG	4 cut(s)	16, 378, 832, 853
Hin1II	CATG	5 cut(s)	13, 71, 464, 669, 690
HinfI	GANTC	3 cut(s)	64, 78, 828
HpaII	CCGG	4 cut(s)	16, 378, 832, 853
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	3 cut(s)	35, 505, 513
Hpy188I	TCNGA	4 cut(s)	394, 478, 709, 792
Hpy188III	TCNNGA	3 cut(s)	16, 260, 593
Hpy8I	GTNNAC	3 cut(s)	35, 505, 513
HpyAV	CCTTC	3 cut(s)	251, 704, 749
HpyCH4III	ACNGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 154
HpyF3I	CTNAG	2 cut(s)	111, 357
Hsp92II	CATG	5 cut(s)	13, 71, 464, 669, 690
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	205, 758, 772
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	7 cut(s)	18, 27, 143, 146, 160, 734, 851
LweI	GCATC	4 cut(s)	118, 130, 598, 713
MaeI	CTAG	2 cut(s)	117, 516
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	207, 760, 774
MboI	GATC	3 cut(s)	205, 758, 772
MboII	GAAGA	4 cut(s)	41, 375, 521, 581
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	772
MluCI	AATT	4 cut(s)	105, 152, 555, 612
MlyI	GAGTC	1 cut(s)	837
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	76, 413, 465, 479, 567, 794
Mph1103I	ATGCAT	1 cut(s)	706
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	2 cut(s)	615, 651
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	4 cut(s)	16, 378, 832, 853
MunI	CAATTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	140, 154
NdeII	GATC	3 cut(s)	205, 758, 772
NlaIII	CATG	5 cut(s)	13, 71, 464, 669, 690
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	3 cut(s)	464, 669, 690
OliI	CACNNNNGTG	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	690
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	64, 78
PkrI	GCNGC	7 cut(s)	8, 42, 133, 136, 150, 724, 841
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	836
PscI	ACATGT	1 cut(s)	460
PspFI	CCCAGC	2 cut(s)	72, 332
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	13, 201, 336
PsuI	RGATCY	1 cut(s)	772
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	284, 512
RsaNI	GTAC	2 cut(s)	283, 511
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	615, 651
SatI	GCNGC	7 cut(s)	7, 41, 132, 135, 149, 723, 840
Sau3AI	GATC	3 cut(s)	205, 758, 772
Sau96I	GGNCC	3 cut(s)	13, 201, 336
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	837
SetI	ASST	8 cut(s)	122, 363, 377, 405, 578, 715, 727, 799
SfaNI	GCATC	4 cut(s)	118, 130, 598, 713
SfcI	CTRYAG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	819
SmoI	CTYRAG	1 cut(s)	819
SphI	GCATGC	1 cut(s)	690
Sse9I	AATT	4 cut(s)	105, 152, 555, 612
SsiI	CCGC	2 cut(s)	811, 825
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	117, 516
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	81, 498
TasI	AATT	4 cut(s)	105, 152, 555, 612
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	64, 78
Tru1I	TTAA	2 cut(s)	615, 651
Tru9I	TTAA	2 cut(s)	615, 651
TscAI	CASTG	7 cut(s)	42, 150, 233, 412, 420, 512, 768
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	7 cut(s)	6, 40, 131, 134, 148, 722, 839
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	5 cut(s)	41, 56, 612, 660, 768
TspRI	CASTG	7 cut(s)	42, 150, 233, 412, 420, 512, 768
VpaK11BI	GGWCC	1 cut(s)	13
XceI	RCATGY	3 cut(s)	464, 669, 690
XspI	CTAG	2 cut(s)	117, 516
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.