Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Reverse (-)

56159260 .. 56162932

Gene Structure 3673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAAGTGGCAGCCTGGTCCGGATAGTTCCTATGTGTTCACTGCTTCTTCTTCTTCTTTTTCCTGTGATTCATGGTTGGGGTATCGAGGGTCACACGACGGTTTGCAGAATTGCTCAGTCTAGGTTGAGCGATGCGGCAGCAGATGCAGTGAAGCAATTGCTTCCCAAGTATGCAGAAAATGACTTGGGGACTGTGTGCATATGGGCCGATCGTGTCAAGTTTCGGTATCACTGGTCATCTGCCCTTCACTACATTGACACTCCTGACAACCTTTGCACTTATCAGTACAATAGGGACTGCAAGGACGAAAATGGAGACAAGGGGCGTTGTGTTGCAGGGGCCATAAACAATTACACCACTCAGCTTCTCACTTACAGATCCGGTTCTTCCAAGTCGGAATATAACCTCACTGAAGCACTGTTATTCCTTTCGCATTTTTTCGGAGACATCCATCAGCCTCTACATGTGGGTTTCACTTCAGACAGGGGGGGCAATACCATTGAAGTTCACTGGTACACCAGGAAGCAAAATCTTCACCATGTGAGTCTGTCTTGTTACCAACTTCAATTCCCTTTTTTGTGCTTCAACCTTAATTTCCACTACAAGATACTTATAGTTACAAGTCGAGTTTTGAAATGTGCAATGCATTCAGATATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

221

Amino Acids

25.11

Weight (kDa)

8.07

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	27 - 182	2.5e-53	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	375
AcuI	CTGAAG	2 cut(s)	435, 465
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	290, 518
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	506, 569, 589, 637
AjnI	CCWGG	2 cut(s)	15, 521
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	312, 441
AlwI	GGATC	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	2 cut(s)	207, 342
ApeKI	GCWGC	2 cut(s)	12, 140
AspS9I	GGNCC	3 cut(s)	19, 207, 342
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	24, 152
BccI	CCATC	1 cut(s)	462
BciT130I	CCWGG	2 cut(s)	17, 523
BcoDI	GTCTC	2 cut(s)	312, 441
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	13, 138, 141
BlsI	GCNGC	3 cut(s)	14, 139, 142
Bme1390I	CCNGG	2 cut(s)	17, 523
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	19, 207, 342
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	17, 523
BmsI	GCATC	2 cut(s)	124, 136
BsaWI	WCCGGW	2 cut(s)	21, 383
Bse1I	ACTGG	2 cut(s)	239, 518
Bse3DI	GCAATG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	17, 523
BseGI	GGATG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	131, 377
BseNI	ACTGG	2 cut(s)	239, 518
BseXI	GCAGC	2 cut(s)	24, 152
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	209, 344
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	22, 384
BslFI	GGGAC	2 cut(s)	205, 311
BsmAI	GTCTC	2 cut(s)	312, 441
BsmFI	GGGAC	2 cut(s)	205, 311
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	209, 344
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	211, 380
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	209, 344
BspCNI	CTCAG	2 cut(s)	130, 376
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	239, 518
BssMI	GATC	2 cut(s)	211, 380
Bst2UI	CCWGG	2 cut(s)	17, 523
Bst4CI	ACNGT	3 cut(s)	103, 196, 423
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	117, 363
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	2 cut(s)	214, 383
BstMAI	GTCTC	2 cut(s)	312, 441
BstMBI	GATC	2 cut(s)	211, 380
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	17, 523
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	15, 521
BstV1I	GCAGC	2 cut(s)	24, 152
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	209, 344
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	2 cut(s)	41, 156
BtsIMutI	CAGTG	6 cut(s)	41, 156, 232, 411, 419, 511
Cfr13I	GGNCC	3 cut(s)	19, 207, 342
Csp6I	GTAC	2 cut(s)	289, 517
CviAII	CATG	3 cut(s)	74, 467, 542
CviJI	RGCY	5 cut(s)	15, 209, 344, 367, 460
CviKI_1	RGCY	5 cut(s)	15, 209, 344, 367, 460
CviQI	GTAC	2 cut(s)	289, 517
DdeI	CTNAG	2 cut(s)	117, 363
DpnI	GATC	2 cut(s)	213, 382
DpnII	GATC	2 cut(s)	211, 380
DraIII	CACNNNGTG	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	435, 465
EcoRII	CCWGG	2 cut(s)	15, 521
EcoT22I	ATGCAT	1 cut(s)	651
FaeI	CATG	3 cut(s)	77, 470, 545
FaqI	GGGAC	2 cut(s)	205, 311
FatI	CATG	3 cut(s)	73, 466, 541
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	13, 138, 141
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	13, 138, 141
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	13, 138, 141
HaeIII	GGCC	2 cut(s)	209, 344
HapII	CCGG	2 cut(s)	22, 384
Hin1II	CATG	3 cut(s)	77, 470, 545
HinfI	GANTC	2 cut(s)	70, 547
HpaII	CCGG	2 cut(s)	22, 384
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	41, 511, 519
Hpy188I	TCNGA	4 cut(s)	400, 446, 484, 655
Hpy188III	TCNNGA	2 cut(s)	22, 266
Hpy8I	GTNNAC	3 cut(s)	41, 511, 519
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	3 cut(s)	103, 196, 423
HpyCH4V	TGCA	9 cut(s)	108, 149, 176, 201, 279, 303, 338, 644, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	117, 363
Hsp92II	CATG	3 cut(s)	77, 470, 545
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	211, 380
Lsp1109I	GCAGC	2 cut(s)	24, 152
LweI	GCATC	2 cut(s)	124, 136
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	92, 557, 619
MalI	GATC	2 cut(s)	213, 382
MboI	GATC	2 cut(s)	211, 380
MboII	GAAGA	5 cut(s)	41, 44, 47, 381, 527
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	5 cut(s)	111, 158, 352, 569, 595
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	82, 419, 471
Mph1103I	ATGCAT	1 cut(s)	651
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	1 cut(s)	594
MspI	CCGG	2 cut(s)	22, 384
MspR9I	CCNGG	2 cut(s)	17, 523
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	2 cut(s)	17, 523
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	2 cut(s)	211, 380
NlaIII	CATG	3 cut(s)	77, 470, 545
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	470
PciI	ACATGT	1 cut(s)	466
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	14, 139, 142
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	15, 521
PspGI	CCWGG	2 cut(s)	15, 521
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	3 cut(s)	19, 207, 342
PsuI	RGATCY	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	290, 518
RsaNI	GTAC	2 cut(s)	289, 517
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	3 cut(s)	13, 138, 141
Sau3AI	GATC	2 cut(s)	211, 380
Sau96I	GGNCC	3 cut(s)	19, 207, 342
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	17, 523
SetI	ASST	5 cut(s)	128, 276, 369, 411, 594
SfaNI	GCATC	2 cut(s)	124, 136
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	5 cut(s)	111, 158, 352, 569, 595
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	15, 521
TaaI	ACNGT	3 cut(s)	103, 196, 423
TaqI	TCGA	2 cut(s)	87, 628
TasI	AATT	5 cut(s)	111, 158, 352, 569, 595
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	12, 140
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.