Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Forward (+)

30320416 .. 30322763

Gene Structure 2348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATGAGCTGCATCTTTTCAGTGGTTTTGGGAGCAAAGGAAGCAATGGGGTGTGGCAGAATCCAGATAATTACTCTGTGTTCACTGCTGCTTCTTTTTCCTGTCATTCATGGTTGGGGAACTGTTGGCCATCTCACAGTTTGCAGAATTGCTCAGTCTAGGTTGAGCAAAGCAGCAGCAGATGCAGTGAAGCAGCTGCTTCCTGCCTATGCAGAAAATGACTTGGGCAGTCTCTGCATATGGCCAGATCATGTCAAGTTTATTTATCACTGGTCCTCTGCCCTTCACTACATTAATACTCCTGACAACCTTTGTAATTACCAATACAATAGGGACTGCAAAGATGAAAATGGAGAGAAGGGGCGCTGCGTTGCAGGGGCTATTAACAATTATACCTCACAGCTTCTCACTTACAATAGCCATTCTTCTCAGCCTAAATATAATCTCACGCAAGCGCTTCTGTTTCTTTCCCATTTCATTGGAGACATCCATCAGCCTCTGCATGTAGGTTTTACTTCAGACAAGGGCGGCAATACAATTGATGTTCACTGGTACACAAGGAAGCAAAATCTTCACCATATTTGGGATGACAACATAGTCGAGACAGCAGAAGAGAGATTCTATGACTCCAATGCGGAAGAACTGGTTGATGCAATTAAACAAAATATTACGACTGAATGGGCAGATGAAGTTAAGGGTTGGGAGACCTGCAGCTTGAATAAGACAGCATGCCCAGACGTATATGCATCTGAAGGCATTAAAGCGGCCTGTGATTGGGCATACAAGGGGGCAGAAGAAGGTTCAGTGCTAGAAGATGAATATTTCCTCTCCCGGCTGCCAATAGTCAATTGGCGGTTGGCTCAAGGTGGAGTCCGACTAGCAGCCACACTCAACCGTATCTTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

303

Amino Acids

33.88

Weight (kDa)

5.71

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	716
AciI	CCGC	4 cut(s)	528, 635, 764, 853
AcoI	YGGCCR	2 cut(s)	127, 242
AcuI	CTGAAG	2 cut(s)	501, 771
AfaI	GTAC	1 cut(s)	554
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	583, 774
AgsI	TTSAA	1 cut(s)	718
AluBI	AGCT	4 cut(s)	9, 196, 403, 714
AluI	AGCT	4 cut(s)	9, 196, 403, 714
Alw26I	GTCTC	4 cut(s)	236, 477, 596, 698
AlwNI	CAGNNNCTG	2 cut(s)	234, 499
Aor51HI	AGCGCT	1 cut(s)	456
AoxI	GGCC	3 cut(s)	127, 242, 765
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	366, 457
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	273
BalI	TGGCCA	2 cut(s)	129, 244
BbvI	GCAGC	9 cut(s)	75, 183, 185, 188, 205, 353, 723, 822, 893
BccI	CCATC	2 cut(s)	138, 498
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	4 cut(s)	236, 477, 596, 698
BfaI	CTAG	3 cut(s)	159, 809, 878
BfmI	CTRYAG	1 cut(s)	709
BfoI	RGCGCY	2 cut(s)	367, 458
BfuAI	ACCTGC	1 cut(s)	716
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	4 cut(s)	21, 172, 640, 755
BpuEI	CTTGAG	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	832
BsaI	GGTCTC	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 774
Bse1I	ACTGG	3 cut(s)	275, 554, 648
Bse3DI	GCAATG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	486, 592
BseLI	CCNNNNNNNGG	2 cut(s)	583, 774
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	167, 443
BseNI	ACTGG	3 cut(s)	275, 554, 648
BseXI	GCAGC	9 cut(s)	75, 183, 185, 188, 205, 353, 723, 822, 893
BshFI	GGCC	3 cut(s)	129, 244, 767
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	583, 774
BsmAI	GTCTC	4 cut(s)	236, 477, 596, 698
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	129, 244, 767
Bso31I	GGTCTC	1 cut(s)	698
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	4 cut(s)	528, 635, 764, 853
BspANI	GGCC	3 cut(s)	129, 244, 767
BspCNI	CTCAG	2 cut(s)	166, 442
BspMAI	CTGCAG	1 cut(s)	713
BspMI	ACCTGC	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	275, 554, 648
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	124, 139, 896
Bst6I	CTCTTC	1 cut(s)	606
BstAPI	GCANNNNNTGC	2 cut(s)	182, 234
BstC8I	GCNNGC	2 cut(s)	453, 730
BstDEI	CTNAG	2 cut(s)	153, 429
BstF5I	GGATG	2 cut(s)	486, 592
BstH2I	RGCGCY	2 cut(s)	367, 458
BstHHI	GCGC	2 cut(s)	366, 457
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	4 cut(s)	236, 477, 596, 698
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 182, 234
BstNSI	RCATGY	2 cut(s)	506, 732
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	709
BstV1I	GCAGC	9 cut(s)	75, 183, 185, 188, 205, 353, 723, 822, 893
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	129, 244, 767
BtsCI	GGATG	2 cut(s)	486, 592
BtsI	GCAGTG	2 cut(s)	83, 192
BtsIMutI	CAGTG	6 cut(s)	27, 83, 192, 268, 547, 810
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	2 cut(s)	453, 730
CaiI	CAGNNNCTG	2 cut(s)	234, 499
CfoI	GCGC	2 cut(s)	366, 457
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	4 cut(s)	110, 251, 503, 729
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	153, 429
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	2 cut(s)	127, 242
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	501, 771
EcoT22I	ATGCAT	1 cut(s)	748
FaeI	CATG	4 cut(s)	113, 254, 506, 732
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	109, 250, 502, 728
FauNDI	CATATG	1 cut(s)	239
FokI	GGATG	2 cut(s)	473, 599
FspBI	CTAG	3 cut(s)	159, 809, 878
GlaI	GCGC	2 cut(s)	365, 456
HaeII	RGCGCY	2 cut(s)	367, 458
HaeIII	GGCC	3 cut(s)	129, 244, 767
HapII	CCGG	1 cut(s)	832
HhaI	GCGC	2 cut(s)	366, 457
Hin1II	CATG	4 cut(s)	113, 254, 506, 732
Hin6I	GCGC	2 cut(s)	364, 455
HinP1I	GCGC	2 cut(s)	364, 455
HinfI	GANTC	4 cut(s)	60, 618, 626, 870
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	83, 547, 555
Hpy188I	TCNGA	3 cut(s)	520, 751, 875
Hpy188III	TCNNGA	3 cut(s)	64, 302, 601
Hpy8I	GTNNAC	3 cut(s)	83, 547, 555
HpyAV	CCTTC	4 cut(s)	293, 352, 746, 791
HpyCH4III	ACNGT	3 cut(s)	124, 139, 896
HpyCH4IV	ACGT	1 cut(s)	738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 182, 234
HpyF3I	CTNAG	2 cut(s)	153, 429
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	4 cut(s)	113, 254, 506, 732
HspAI	GCGC	2 cut(s)	364, 455
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	9 cut(s)	75, 183, 185, 188, 205, 353, 723, 822, 893
LweI	GCATC	4 cut(s)	21, 172, 640, 755
MaeI	CTAG	3 cut(s)	159, 809, 878
MaeII	ACGT	1 cut(s)	738
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	7 cut(s)	417, 563, 623, 650, 806, 824, 892
MfeI	CAATTG	2 cut(s)	537, 847
MlsI	TGGCCA	2 cut(s)	129, 244
MluCI	AATT	7 cut(s)	69, 147, 316, 388, 537, 654, 847
MluNI	TGGCCA	2 cut(s)	129, 244
MlyI	GAGTC	2 cut(s)	620, 879
MmeI	TCCRAC	1 cut(s)	898
MnlI	CCTC	4 cut(s)	286, 406, 507, 836
Mox20I	TGGCCA	2 cut(s)	129, 244
Mph1103I	ATGCAT	1 cut(s)	748
MscI	TGGCCA	2 cut(s)	129, 244
MseI	TTAA	5 cut(s)	294, 384, 657, 693, 759
Msp20I	TGGCCA	2 cut(s)	129, 244
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	1 cut(s)	832
MunI	CAATTG	2 cut(s)	537, 847
MwoI	GCNNNNNNNGC	3 cut(s)	41, 182, 234
NciI	CCSGG	1 cut(s)	832
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	113, 254, 506, 732
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	2 cut(s)	506, 732
PaeI	GCATGC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	60, 618
PleI	GAGTC	2 cut(s)	620, 878
PpsI	GAGTC	2 cut(s)	620, 878
PshBI	ATTAAT	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	713
PstNI	CAGNNNCTG	2 cut(s)	234, 499
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	5 cut(s)	294, 384, 657, 693, 759
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	620, 879
ScrFI	CCNGG	1 cut(s)	832
SfaNI	GCATC	4 cut(s)	21, 172, 640, 755
SfcI	CTRYAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	861
SmoI	CTYRAG	1 cut(s)	861
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	7 cut(s)	69, 147, 316, 388, 537, 654, 847
SsiI	CCGC	4 cut(s)	528, 635, 764, 853
SspI	AATATT	2 cut(s)	667, 821
SspMI	CTAG	3 cut(s)	159, 809, 878
StyD4I	CCNGG	1 cut(s)	830
TaaI	ACNGT	3 cut(s)	124, 139, 896
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	1 cut(s)	600
TasI	AATT	7 cut(s)	69, 147, 316, 388, 537, 654, 847
TauI	GCSGC	2 cut(s)	531, 767
TfiI	GAWTC	2 cut(s)	60, 618
Tru1I	TTAA	5 cut(s)	294, 384, 657, 693, 759
Tru9I	TTAA	5 cut(s)	294, 384, 657, 693, 759
TscAI	CASTG	6 cut(s)	27, 90, 192, 275, 554, 810
TspDTI	ATGAA	5 cut(s)	98, 360, 466, 702, 831
TspRI	CASTG	6 cut(s)	27, 90, 192, 275, 554, 810
VpaK11BI	GGWCC	1 cut(s)	273
VspI	ATTAAT	1 cut(s)	294
XceI	RCATGY	2 cut(s)	506, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XspI	CTAG	3 cut(s)	159, 809, 878
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.